Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:59:03 (3898507): wrapper (7.7.26015): starting
10:59:03 (3898507): wrapper: running run_atlas (--nthreads 3)
[2025-11-27 10:59:03] Arguments: --nthreads 3
[2025-11-27 10:59:03] Threads: 3
[2025-11-27 10:59:03] Checking for CVMFS
[2025-11-27 10:59:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 10:59:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 10:59:04] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 10:59:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 10:59:04] 2.9.2.0 3252557 140 63020 153358 1 88 35961238 36864001 0 130560 0 1940753 100.000 6619 20429 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-27 10:59:04] CVMFS is ok
[2025-11-27 10:59:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 10:59:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 10:59:04] Further information can be found at the LHC@home message board.
[2025-11-27 10:59:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 10:59:04] Checking for apptainer binary...
[2025-11-27 10:59:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 10:59:04] Running /usr/bin/apptainer --version
[2025-11-27 10:59:04] apptainer version 1.4.1-1.1
[2025-11-27 10:59:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 10:59:04] thA335
[2025-11-27 10:59:04] apptainer works
[2025-11-27 10:59:04] Set ATHENA_PROC_NUMBER=3
[2025-11-27 10:59:04] Set ATHENA_CORE_NUMBER=3
[2025-11-27 10:59:04] Starting ATLAS job with PandaID=6896714102
[2025-11-27 10:59:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 11:03:24]  *** The last 200 lines of the pilot log: ***
[2025-11-27 11:03:24] 2025-11-27 10:02:36,379 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 11:03:24] 2025-11-27 10:02:36,379 | INFO     | update_server=False
[2025-11-27 11:03:24] 2025-11-27 10:02:36,379 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 11:03:24] 2025-11-27 10:02:36,379 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 11:03:24] 2025-11-27 10:02:36,379 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 11:03:24] 2025-11-27 10:02:36,379 | INFO     | aborting loop
[2025-11-27 11:03:24] 2025-11-27 10:02:36,706 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 11:03:24] 2025-11-27 10:02:36,844 | INFO     | all job control threads have been joined
[2025-11-27 11:03:24] 2025-11-27 10:02:36,946 | INFO     | all data control threads have been joined
[2025-11-27 11:03:24] 2025-11-27 10:02:37,381 | INFO     | [job] queue monitor thread has finished
[2025-11-27 11:03:24] 2025-11-27 10:02:37,384 | INFO     | [job] retrieve thread has finished
[2025-11-27 11:03:24] 2025-11-27 10:02:37,385 | INFO     | [job] job monitor thread has finished
[2025-11-27 11:03:24] 2025-11-27 10:02:37,414 | INFO     | all payload control threads have been joined
[2025-11-27 11:03:24] 2025-11-27 10:02:37,622 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 11:03:24] 2025-11-27 10:02:37,850 | INFO     | [job] control thread has finished
[2025-11-27 11:03:24] 2025-11-27 10:02:37,952 | INFO     | [data] control thread has finished
[2025-11-27 11:03:24] 2025-11-27 10:02:38,027 | INFO     | [data] copytool_in thread has finished
[2025-11-27 11:03:24] 2025-11-27 10:02:38,098 | INFO     | [payload] failed_post thread has finished
[2025-11-27 11:03:24] 2025-11-27 10:02:38,264 | INFO     | [payload] validate_post thread has finished
[2025-11-27 11:03:24] 2025-11-27 10:02:38,362 | INFO     | [job] validate thread has finished
[2025-11-27 11:03:24] 2025-11-27 10:02:38,420 | INFO     | [payload] control thread has finished
[2025-11-27 11:03:24] 2025-11-27 10:02:38,436 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 11:03:24] 2025-11-27 10:02:38,504 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 11:03:24] 2025-11-27 10:02:38,712 | INFO     | [data] copytool_out thread has finished
[2025-11-27 11:03:24] 2025-11-27 10:02:38,731 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 11:03:24] 2025-11-27 10:02:39,013 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 11:03:24] 2025-11-27 10:02:43,020 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 11:03:24] 2025-11-27 10:03:06,121 | INFO     | PID=3902243 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 11:03:24] 2025-11-27 10:03:06,121 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 11:03:24] 2025-11-27 10:03:06,121 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 11:03:24] 2025-11-27 10:03:06,121 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 11:03:24] 2025-11-27 10:03:17,134 | INFO     | [monitor] cgroup control has ended
[2025-11-27 11:03:24] 2025-11-27 10:03:18,858 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140053323925312)>', '<ExcThread(monitor, started 140052675933952)>']
[2025-11-27 11:03:24] 2025-11-27 10:03:19,191 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 11:03:24] 2025-11-27 10:03:19,191 | INFO     | [monitor] control thread has ended
[2025-11-27 11:03:24] 2025-11-27 10:03:23,884 | INFO     | all workflow threads have been joined
[2025-11-27 11:03:24] 2025-11-27 10:03:23,885 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 11:03:24] 2025-11-27 10:03:23,886 | INFO     | traces error code: 0
[2025-11-27 11:03:24] 2025-11-27 10:03:23,886 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 11:03:24] 2025-11-27 10:03:23,967 [wrapper] ==== pilot stdout END ====
[2025-11-27 11:03:24] 2025-11-27 10:03:23,970 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 11:03:24] 2025-11-27 10:03:23,974 [wrapper] pilotpid: 3902243
[2025-11-27 11:03:24] 2025-11-27 10:03:23,977 [wrapper] Pilot exit status: 0
[2025-11-27 11:03:24] 2025-11-27 10:03:23,984 [wrapper] pandaids: 6896714102
[2025-11-27 11:03:24] 2025-11-27 10:03:24,001 [wrapper] cleanup supervisor_pilot 3902249 3902244
[2025-11-27 11:03:24] 2025-11-27 10:03:24,003 [wrapper] Test setup, not cleaning
[2025-11-27 11:03:24] 2025-11-27 10:03:24,006 [wrapper] apfmon messages muted
[2025-11-27 11:03:24] 2025-11-27 10:03:24,008 [wrapper] ==== wrapper stdout END ====
[2025-11-27 11:03:24] 2025-11-27 10:03:24,011 [wrapper] ==== wrapper stderr END ====
[2025-11-27 11:03:24]  *** Error codes and diagnostics ***
[2025-11-27 11:03:24]     "exeErrorCode": 65,
[2025-11-27 11:03:24]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-27 11:03:24]     "pilotErrorCode": 1305,
[2025-11-27 11:03:24]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-27 11:03:24]  *** Listing of results directory ***
[2025-11-27 11:03:24] total 405312
[2025-11-27 11:03:24] -rw-r--r-- 1 boinc boinc    576529 Nov 25 07:04 pilot3.tar.gz
[2025-11-27 11:03:24] -rw-r--r-- 1 boinc boinc      5112 Nov 25 07:27 queuedata.json
[2025-11-27 11:03:24] -rwx------ 1 boinc boinc     36292 Nov 25 07:28 runpilot2-wrapper.sh
[2025-11-27 11:03:24] -rw-r--r-- 1 boinc boinc       100 Nov 27 10:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 11:03:24] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 10:59 run_atlas
[2025-11-27 11:03:24] -rw-r--r-- 1 boinc boinc       105 Nov 27 10:59 job.xml
[2025-11-27 11:03:24] -rw-r--r-- 2 boinc boinc 410838778 Nov 27 10:59 EVNT.47483658._002120.pool.root.1
[2025-11-27 11:03:24] -rw-r--r-- 2 boinc boinc    590100 Nov 27 10:59 input.tar.gz
[2025-11-27 11:03:24] -rw-r--r-- 2 boinc boinc     15847 Nov 27 10:59 start_atlas.sh
[2025-11-27 11:03:24] drwxrwx--x 2 boinc boinc      4096 Nov 27 10:59 shared
[2025-11-27 11:03:24] -rw-r--r-- 1 boinc boinc         0 Nov 27 10:59 boinc_setup_complete
[2025-11-27 11:03:24] -rw-r--r-- 1 boinc boinc      6196 Nov 27 10:59 init_data.xml
[2025-11-27 11:03:24] -rw-r--r-- 1 boinc boinc         0 Nov 27 10:59 boinc_lockfile
[2025-11-27 11:03:24] -rw-r--r-- 1 boinc boinc      2784 Nov 27 10:59 pandaJob.out
[2025-11-27 11:03:24] -rw------- 1 boinc boinc    991551 Nov 27 10:59 agis_schedconf.cvmfs.json
[2025-11-27 11:03:24] -rw------- 1 boinc boinc   1516240 Nov 27 10:59 agis_ddmendpoints.agis.ALL.json
[2025-11-27 11:03:24] drwx------ 5 boinc boinc      4096 Nov 27 10:59 pilot3
[2025-11-27 11:03:24] -rw-r--r-- 1 boinc boinc       523 Nov 27 11:00 boinc_task_state.xml
[2025-11-27 11:03:24] -rw------- 1 boinc boinc       939 Nov 27 11:00 memory_monitor_summary.json
[2025-11-27 11:03:24] -rw------- 1 boinc boinc     55858 Nov 27 11:00 log.47556161._001032.job.log.tgz.1
[2025-11-27 11:03:24] -rw------- 1 boinc boinc        95 Nov 27 11:02 pilot_heartbeat.json
[2025-11-27 11:03:24] -rw------- 1 boinc boinc      8402 Nov 27 11:02 heartbeat.json
[2025-11-27 11:03:24] -rw-r--r-- 1 boinc boinc      8192 Nov 27 11:03 boinc_mmap_file
[2025-11-27 11:03:24] -rw-r--r-- 1 boinc boinc        23 Nov 27 11:03 wrapper_checkpoint.txt
[2025-11-27 11:03:24] -rw------- 1 boinc boinc      4752 Nov 27 11:03 pilotlog.txt
[2025-11-27 11:03:24] -rw------- 1 boinc boinc     93762 Nov 27 11:03 log.47556161._001032.job.log.1
[2025-11-27 11:03:24] -rw------- 1 boinc boinc       186 Nov 27 11:03 output.list
[2025-11-27 11:03:24] -rw-r--r-- 1 boinc boinc       620 Nov 27 11:03 runtime_log
[2025-11-27 11:03:24] -rw------- 1 boinc boinc    174080 Nov 27 11:03 result.tar.gz
[2025-11-27 11:03:24] -rw------- 1 boinc boinc       649 Nov 27 11:03 yxfKDmEi1h8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmcNJKDmKoauGm.diag
[2025-11-27 11:03:24] -rw-r--r-- 1 boinc boinc      8744 Nov 27 11:03 runtime_log.err
[2025-11-27 11:03:24] -rw-r--r-- 1 boinc boinc      7893 Nov 27 11:03 stderr.txt
[2025-11-27 11:03:24] No HITS result produced
[2025-11-27 11:03:24]  *** Contents of shared directory: ***
[2025-11-27 11:03:24] total 401984
[2025-11-27 11:03:24] -rw-r--r-- 2 boinc boinc 410838778 Nov 27 10:59 ATLAS.root_0
[2025-11-27 11:03:24] -rw-r--r-- 2 boinc boinc    590100 Nov 27 10:59 input.tar.gz
[2025-11-27 11:03:24] -rw-r--r-- 2 boinc boinc     15847 Nov 27 10:59 start_atlas.sh
[2025-11-27 11:03:24] -rw------- 1 boinc boinc    174080 Nov 27 11:03 result.tar.gz
11:03:25 (3898507): run_atlas exited; CPU time 32.362106
11:03:25 (3898507): called boinc_finish(0)

</stderr_txt>
]]>

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