Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
05:12:35 (2877514): wrapper (7.7.26015): starting
05:12:35 (2877514): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 05:12:35] Arguments: --nthreads 8
[2025-11-27 05:12:35] Threads: 8
[2025-11-27 05:12:35] Checking for CVMFS
[2025-11-27 05:12:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 05:12:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 05:12:36] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 05:12:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 05:12:36] 2.13.3.0 12846 31308 257824 153358 1 625 19365087 32935936 43402 16776704 0 169992011 99.506 210248283 38069 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 05:12:36] CVMFS is ok
[2025-11-27 05:12:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 05:12:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 05:12:36] Further information can be found at the LHC@home message board.
[2025-11-27 05:12:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 05:12:36] Checking for apptainer binary...
[2025-11-27 05:12:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 05:12:36] Running /usr/bin/apptainer --version
[2025-11-27 05:12:36] apptainer version 1.4.4-1.el9
[2025-11-27 05:12:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 05:12:36] c7-16-9.aglt2.org
[2025-11-27 05:12:36] apptainer works
[2025-11-27 05:12:36] Set ATHENA_PROC_NUMBER=8
[2025-11-27 05:12:36] Set ATHENA_CORE_NUMBER=8
[2025-11-27 05:12:36] Starting ATLAS job with PandaID=6891572124
[2025-11-27 05:12:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 14:18:04]  *** The last 200 lines of the pilot log: ***
[2025-11-27 14:18:04] 2025-11-27 19:17:06,041 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 14:18:04] 2025-11-27 19:17:06,050 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3117.3553958333337
[2025-11-27 14:18:04] 2025-11-27 19:17:06,130 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6891572124/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 14:18:04] 2025-11-27 19:17:06,131 | INFO     | extracted standard info from prmon json
[2025-11-27 14:18:04] 2025-11-27 19:17:06,131 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 14:18:04] 2025-11-27 19:17:06,131 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 14:18:04] 2025-11-27 19:17:06,141 | INFO     | fitting pss+swap vs Time
[2025-11-27 14:18:04] 2025-11-27 19:17:06,142 | INFO     | sum of square deviations: 47218075088.0991
[2025-11-27 14:18:04] 2025-11-27 19:17:06,151 | INFO     | sum of deviations: 391575576777.755
[2025-11-27 14:18:04] 2025-11-27 19:17:06,151 | INFO     | mean x: 1764254688.1779027
[2025-11-27 14:18:04] 2025-11-27 19:17:06,152 | INFO     | mean y: 2853457.0131086144
[2025-11-27 14:18:04] 2025-11-27 19:17:06,152 | INFO     | intersect: -14627964207.984007
[2025-11-27 14:18:04] 2025-11-27 19:17:06,153 | INFO     | chi2: 8.075842256730555
[2025-11-27 14:18:04] 2025-11-27 19:17:06,154 | INFO     | sum of square deviations: 45904398136.388985
[2025-11-27 14:18:04] 2025-11-27 19:17:06,167 | INFO     | sum of deviations: 582455627883.6313
[2025-11-27 14:18:04] 2025-11-27 19:17:06,168 | INFO     | mean x: 1764254535.6937618
[2025-11-27 14:18:04] 2025-11-27 19:17:06,168 | INFO     | mean y: 2875614.9792060493
[2025-11-27 14:18:04] 2025-11-27 19:17:06,168 | INFO     | intersect: -22382778593.59789
[2025-11-27 14:18:04] 2025-11-27 19:17:06,168 | INFO     | chi2: 4.474872972433423
[2025-11-27 14:18:04] 2025-11-27 19:17:06,169 | INFO     | current chi2=4.474872972433423 (change=44.5893960013399 %)
[2025-11-27 14:18:04] 2025-11-27 19:17:06,169 | INFO     | sum of square deviations: 44615294152.326324
[2025-11-27 14:18:04] 2025-11-27 19:17:06,226 | INFO     | sum of deviations: 660765256115.9502
[2025-11-27 14:18:04] 2025-11-27 19:17:06,227 | INFO     | mean x: 1764254383.2080152
[2025-11-27 14:18:04] 2025-11-27 19:17:06,227 | INFO     | mean y: 2884872.2022900763
[2025-11-27 14:18:04] 2025-11-27 19:17:06,227 | INFO     | intersect: -26126226714.37563
[2025-11-27 14:18:04] 2025-11-27 19:17:06,227 | INFO     | chi2: 3.7493182023511404
[2025-11-27 14:18:04] 2025-11-27 19:17:06,228 | INFO     | current chi2=3.7493182023511404 (change=16.213974665916115 %)
[2025-11-27 14:18:04] 2025-11-27 19:17:06,228 | INFO     | right removable region: 523
[2025-11-27 14:18:04] 2025-11-27 19:17:06,228 | INFO     | sum of square deviations: 45903851576.388985
[2025-11-27 14:18:04] 2025-11-27 19:17:06,288 | INFO     | sum of deviations: 204036322955.44058
[2025-11-27 14:18:04] 2025-11-27 19:17:06,288 | INFO     | mean x: 1764254840.6937618
[2025-11-27 14:18:04] 2025-11-27 19:17:06,288 | INFO     | mean y: 2875205.527410208
[2025-11-27 14:18:04] 2025-11-27 19:17:06,288 | INFO     | intersect: -7838995532.758225
[2025-11-27 14:18:04] 2025-11-27 19:17:06,289 | INFO     | chi2: 4.804256007487841
[2025-11-27 14:18:04] 2025-11-27 19:17:06,289 | INFO     | current chi2=4.804256007487841 (change=40.510774545108454 %)
[2025-11-27 14:18:04] 2025-11-27 19:17:06,330 | INFO     | sum of square deviations: 44614329747.15082
[2025-11-27 14:18:04] 2025-11-27 19:17:06,386 | INFO     | sum of deviations: 155628676977.65094
[2025-11-27 14:18:04] 2025-11-27 19:17:06,387 | INFO     | mean x: 1764254993.2041984
[2025-11-27 14:18:04] 2025-11-27 19:17:06,387 | INFO     | mean y: 2880915.704198473
[2025-11-27 14:18:04] 2025-11-27 19:17:06,387 | INFO     | intersect: -6151389965.4159775
[2025-11-27 14:18:04] 2025-11-27 19:17:06,434 | INFO     | chi2: 4.557997095818449
[2025-11-27 14:18:04] 2025-11-27 19:17:06,434 | INFO     | current chi2=4.557997095818449 (change=5.125849065611347 %)
[2025-11-27 14:18:04] 2025-11-27 19:17:06,434 | INFO     | left removable region: 20
[2025-11-27 14:18:04] 2025-11-27 19:17:06,435 | INFO     | sum of square deviations: 39462887397.93636
[2025-11-27 14:18:04] 2025-11-27 19:17:06,516 | INFO     | sum of deviations: 396927161130.5389
[2025-11-27 14:18:04] 2025-11-27 19:17:06,516 | INFO     | mean x: 1764254962.751491
[2025-11-27 14:18:04] 2025-11-27 19:17:06,516 | INFO     | mean y: 2920059.948310139
[2025-11-27 14:18:04] 2025-11-27 19:17:06,516 | INFO     | intersect: -17742378372.320835
[2025-11-27 14:18:04] 2025-11-27 19:17:06,517 | INFO     | chi2: 0.04540047681155869
[2025-11-27 14:18:04] 2025-11-27 19:17:06,517 | INFO     | current memory leak: 10.06 B/s (using 503 data points, chi2=0.05)
[2025-11-27 14:18:04] 2025-11-27 19:17:06,518 | INFO     | could have reported an average CPU frequency of 3071 MHz (21 samples)
[2025-11-27 14:18:04] 2025-11-27 19:17:06,518 | INFO     | ..............................
[2025-11-27 14:18:04] 2025-11-27 19:17:06,518 | INFO     | . Timing measurements:
[2025-11-27 14:18:04] 2025-11-27 19:17:06,518 | INFO     | . get job = 0 s
[2025-11-27 14:18:04] 2025-11-27 19:17:06,518 | INFO     | . initial setup = 3 s
[2025-11-27 14:18:04] 2025-11-27 19:17:06,518 | INFO     | . payload setup = 12 s
[2025-11-27 14:18:04] 2025-11-27 19:17:06,518 | INFO     | . stage-in = 0 s
[2025-11-27 14:18:04] 2025-11-27 19:17:06,518 | INFO     | . payload execution = 32578 s
[2025-11-27 14:18:04] 2025-11-27 19:17:06,518 | INFO     | . stage-out = 8 s
[2025-11-27 14:18:04] 2025-11-27 19:17:06,580 | INFO     | . log creation = 0 s
[2025-11-27 14:18:04] 2025-11-27 19:17:06,580 | INFO     | ..............................
[2025-11-27 14:18:04] 2025-11-27 19:17:07,100 | INFO     | 
[2025-11-27 14:18:04] 2025-11-27 19:17:07,100 | INFO     | job summary report
[2025-11-27 14:18:04] 2025-11-27 19:17:07,100 | INFO     | --------------------------------------------------
[2025-11-27 14:18:04] 2025-11-27 19:17:07,100 | INFO     | PanDA job id: 6891572124
[2025-11-27 14:18:04] 2025-11-27 19:17:07,100 | INFO     | task id: 47493068
[2025-11-27 14:18:04] 2025-11-27 19:17:07,100 | INFO     | errors: (none)
[2025-11-27 14:18:04] 2025-11-27 19:17:07,100 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 14:18:04] 2025-11-27 19:17:07,100 | INFO     | pilot state: finished 
[2025-11-27 14:18:04] 2025-11-27 19:17:07,100 | INFO     | transexitcode: 0
[2025-11-27 14:18:04] 2025-11-27 19:17:07,101 | INFO     | exeerrorcode: 0
[2025-11-27 14:18:04] 2025-11-27 19:17:07,101 | INFO     | exeerrordiag: 
[2025-11-27 14:18:04] 2025-11-27 19:17:07,101 | INFO     | exitcode: 0
[2025-11-27 14:18:04] 2025-11-27 19:17:07,101 | INFO     | exitmsg: OK
[2025-11-27 14:18:04] 2025-11-27 19:17:07,101 | INFO     | cpuconsumptiontime: 195273 s
[2025-11-27 14:18:04] 2025-11-27 19:17:07,101 | INFO     | nevents: 1000
[2025-11-27 14:18:04] 2025-11-27 19:17:07,101 | INFO     | neventsw: 0
[2025-11-27 14:18:04] 2025-11-27 19:17:07,101 | INFO     | pid: 2889579
[2025-11-27 14:18:04] 2025-11-27 19:17:07,101 | INFO     | pgrp: 2889579
[2025-11-27 14:18:04] 2025-11-27 19:17:07,101 | INFO     | corecount: 8
[2025-11-27 14:18:04] 2025-11-27 19:17:07,101 | INFO     | event service: False
[2025-11-27 14:18:04] 2025-11-27 19:17:07,101 | INFO     | sizes: {0: 2284304, 10: 2284566, 11: 2284594, 32595: 2324971, 32596: 2324970, 32605: 2334204, 32620: 2334394}
[2025-11-27 14:18:04] 2025-11-27 19:17:07,101 | INFO     | --------------------------------------------------
[2025-11-27 14:18:04] 2025-11-27 19:17:07,102 | INFO     | 
[2025-11-27 14:18:04] 2025-11-27 19:17:07,102 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-11-27 14:18:04] 2025-11-27 19:17:07,154 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 14:18:04] 2025-11-27 19:17:07,154 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 14:18:04] 2025-11-27 19:17:07,154 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 14:18:04] 2025-11-27 19:17:07,154 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 14:18:04] 2025-11-27 19:17:07,154 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 14:18:04] 2025-11-27 19:17:07,155 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 14:18:04] 2025-11-27 19:17:07,155 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 14:18:04] 2025-11-27 19:17:07,155 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 14:18:04] 2025-11-27 19:17:07,155 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 14:18:04] 2025-11-27 19:17:07,155 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 14:18:04] 2025-11-27 19:17:07,155 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 14:18:04] 2025-11-27 19:17:07,155 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 14:18:04] 2025-11-27 19:17:07,155 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 14:18:04] 2025-11-27 19:17:07,155 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 14:18:04] 2025-11-27 19:17:07,155 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 14:18:04] 2025-11-27 19:17:07,155 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 14:18:04] 2025-11-27 19:17:07,155 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 14:18:04] 2025-11-27 19:17:07,155 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 14:18:04] 2025-11-27 19:17:07,156 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 14:18:04] 2025-11-27 19:17:07,156 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 14:18:04] 2025-11-27 19:17:07,156 | INFO     | job 6891572124 has completed (purged errors)
[2025-11-27 14:18:04] 2025-11-27 19:17:07,156 | INFO     | overall cleanup function is called
[2025-11-27 14:18:04] 2025-11-27 19:17:08,189 | INFO     | --- collectZombieJob: --- 10, [2889579]
[2025-11-27 14:18:04] 2025-11-27 19:17:08,189 | INFO     | zombie collector waiting for pid 2889579
[2025-11-27 14:18:04] 2025-11-27 19:17:08,189 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 14:18:04] 2025-11-27 19:17:08,189 | INFO     | collected zombie processes
[2025-11-27 14:18:04] 2025-11-27 19:17:08,189 | INFO     | will attempt to kill all subprocesses of pid=2889579
[2025-11-27 14:18:04] 2025-11-27 19:17:10,052 | INFO     | process IDs to be killed: [2889579] (in reverse order)
[2025-11-27 14:18:04] 2025-11-27 19:17:10,329 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 14:18:04] 2025-11-27 19:17:10,329 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 14:18:04] 2025-11-27 19:17:10,449 | INFO     | did not find any defunct processes belonging to 2889579
[2025-11-27 14:18:04] 2025-11-27 19:17:10,529 | INFO     | did not find any defunct processes belonging to 2889579
[2025-11-27 14:18:04] 2025-11-27 19:17:10,541 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 14:18:04] 2025-11-27 19:17:10,542 | INFO     | ready for new job
[2025-11-27 14:18:04] 2025-11-27 19:17:10,542 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 14:18:04] 2025-11-27 19:17:10,553 | INFO     | ***************************************
[2025-11-27 14:18:04] 2025-11-27 19:17:10,553 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 14:18:04] 2025-11-27 19:17:10,553 | INFO     | ***************************************
[2025-11-27 14:18:04] 2025-11-27 19:17:10,553 | INFO     | 
[2025-11-27 14:18:04] 2025-11-27 19:17:10,567 | INFO     | architecture information:
[2025-11-27 14:18:04] 2025-11-27 19:17:10,567 | INFO     | executing command: cat /etc/os-release
[2025-11-27 14:18:04] 2025-11-27 19:17:10,659 | INFO     | cat /etc/os-release:
[2025-11-27 14:18:04] NAME="CentOS Linux"
[2025-11-27 14:18:04] VERSION="7 (Core)"
[2025-11-27 14:18:04] ID="centos"
[2025-11-27 14:18:04] ID_LIKE="rhel fedora"
[2025-11-27 14:18:04] VERSION_ID="7"
[2025-11-27 14:18:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 14:18:04] ANSI_COLOR="0;31"
[2025-11-27 14:18:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 14:18:04] HOME_URL="https://www.centos.org/"
[2025-11-27 14:18:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 14:18:04] 
[2025-11-27 14:18:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 14:18:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 14:18:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 14:18:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 14:18:04] 
[2025-11-27 14:18:04] 2025-11-27 19:17:10,659 | INFO     | ***************************************
[2025-11-27 14:18:04] 2025-11-27 19:17:11,163 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-11-27 14:18:04] 2025-11-27 19:17:11,188 | INFO     | sufficient remaining disk space (65992130560 B)
[2025-11-27 14:18:04] 2025-11-27 19:17:11,189 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 14:18:04] 2025-11-27 19:17:11,189 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 14:18:04] 2025-11-27 19:17:11,189 | INFO     | update_server=False
[2025-11-27 14:18:04] 2025-11-27 19:17:11,189 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 14:18:04] 2025-11-27 19:17:11,191 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 14:18:04] 2025-11-27 19:17:11,657 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 14:18:04] 2025-11-27 19:17:11,657 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 14:18:04] 2025-11-27 19:17:11,657 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 14:18:04] 2025-11-27 19:17:11,657 | INFO     | will abort loop
[2025-11-27 14:18:04] 2025-11-27 19:17:11,869 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 14:18:04] 2025-11-27 19:17:11,903 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 14:18:04] 2025-11-27 19:17:12,014 | INFO     | all data control threads have been joined
[2025-11-27 14:18:04] 2025-11-27 19:17:12,190 | INFO     | all payload control threads have been joined
[2025-11-27 14:18:04] 2025-11-27 19:17:12,195 | INFO     | [job] retrieve thread has finished
[2025-11-27 14:18:04] 2025-11-27 19:17:12,209 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 14:18:04] 2025-11-27 19:17:12,624 | INFO     | all job control threads have been joined
[2025-11-27 14:18:04] 2025-11-27 19:17:12,651 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 14:18:04] 2025-11-27 19:17:12,654 | INFO     | [job] validate thread has finished
[2025-11-27 14:18:04] 2025-11-27 19:17:12,655 | INFO     | [data] copytool_in thread has finished
[2025-11-27 14:18:04] 2025-11-27 19:17:12,655 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 14:18:04] 2025-11-27 19:17:12,664 | INFO     | [job] job monitor thread has finished
[2025-11-27 14:18:04] 2025-11-27 19:17:12,875 | INFO     | [job] queue monitor thread has finished
[2025-11-27 14:18:04] 2025-11-27 19:17:12,981 | INFO     | [payload] failed_post thread has finished
[2025-11-27 14:18:04] 2025-11-27 19:17:13,012 | INFO     | [payload] validate_post thread has finished
[2025-11-27 14:18:04] 2025-11-27 19:17:13,020 | INFO     | [data] control thread has finished
[2025-11-27 14:18:04] 2025-11-27 19:17:13,195 | INFO     | [payload] control thread has finished
[2025-11-27 14:18:04] 2025-11-27 19:17:13,200 | INFO     | [data] copytool_out thread has finished
[2025-11-27 14:18:04] 2025-11-27 19:17:13,630 | INFO     | [job] control thread has finished
[2025-11-27 14:18:04] 2025-11-27 19:17:13,641 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 14:18:04] 2025-11-27 19:17:15,955 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 14:18:04] 2025-11-27 19:17:37,892 | INFO     | 32649s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-27 14:18:04] 2025-11-27 19:17:40,656 | INFO     | PID=2882454 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 14:18:04] 2025-11-27 19:17:40,656 | INFO     | .. there are 53 such processes running
[2025-11-27 14:18:04] 2025-11-27 19:17:40,657 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 14:18:04] 2025-11-27 19:17:40,657 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 14:18:04] 2025-11-27 19:17:40,657 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 14:18:04] 2025-11-27 19:17:57,576 | INFO     | [monitor] cgroup control has ended
[2025-11-27 14:18:04] 2025-11-27 19:17:58,157 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139981527283520)>', '<ExcThread(monitor, started 139980886234880)>']
[2025-11-27 14:18:04] 2025-11-27 19:17:58,776 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 14:18:04] 2025-11-27 19:17:58,776 | INFO     | [monitor] control thread has ended
[2025-11-27 14:18:04] 2025-11-27 19:18:03,183 | INFO     | all workflow threads have been joined
[2025-11-27 14:18:04] 2025-11-27 19:18:03,183 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 14:18:04] 2025-11-27 19:18:03,183 | INFO     | traces error code: 0
[2025-11-27 14:18:04] 2025-11-27 19:18:03,183 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 14:18:04] 2025-11-27 19:18:03,491 [wrapper] ==== pilot stdout END ====
[2025-11-27 14:18:04] 2025-11-27 19:18:03,509 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 14:18:04] 2025-11-27 19:18:03,541 [wrapper] pilotpid: 2882454
[2025-11-27 14:18:04] 2025-11-27 19:18:03,545 [wrapper] Pilot exit status: 0
[2025-11-27 14:18:04] 2025-11-27 19:18:03,561 [wrapper] pandaids: 6891572124
[2025-11-27 14:18:04] 2025-11-27 19:18:03,716 [wrapper] cleanup supervisor_pilot  882167 2882455
[2025-11-27 14:18:04] 2025-11-27 19:18:03,737 [wrapper] Test setup, not cleaning
[2025-11-27 14:18:04] 2025-11-27 19:18:03,764 [wrapper] apfmon messages muted
[2025-11-27 14:18:04] 2025-11-27 19:18:03,786 [wrapper] ==== wrapper stdout END ====
[2025-11-27 14:18:04] 2025-11-27 19:18:03,805 [wrapper] ==== wrapper stderr END ====
[2025-11-27 14:18:04]  *** Error codes and diagnostics ***
[2025-11-27 14:18:04]     "exeErrorCode": 0,
[2025-11-27 14:18:04]     "exeErrorDiag": "",
[2025-11-27 14:18:04]     "pilotErrorCode": 0,
[2025-11-27 14:18:04]     "pilotErrorDiag": "",
[2025-11-27 14:18:04]  *** Listing of results directory ***
[2025-11-27 14:18:04] total 1316812
[2025-11-27 14:18:04] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 10:47 pilot3.tar.gz
[2025-11-27 14:18:04] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 11:20 queuedata.json
[2025-11-27 14:18:04] -rwx------. 1 boincer umatlas     36292 Nov 18 11:21 runpilot2-wrapper.sh
[2025-11-27 14:18:04] -rw-r--r--. 1 boincer umatlas       100 Nov 27 05:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 14:18:04] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 05:12 run_atlas
[2025-11-27 14:18:04] -rw-r--r--. 1 boincer umatlas       105 Nov 27 05:12 job.xml
[2025-11-27 14:18:04] -rw-r--r--. 2 boincer umatlas 409880741 Nov 27 05:12 EVNT.47493065._000330.pool.root.1
[2025-11-27 14:18:04] -rw-r--r--. 2 boincer umatlas     15120 Nov 27 05:12 start_atlas.sh
[2025-11-27 14:18:04] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 05:12 shared
[2025-11-27 14:18:04] -rw-r--r--. 2 boincer umatlas    590096 Nov 27 05:12 input.tar.gz
[2025-11-27 14:18:04] -rw-r--r--. 1 boincer umatlas         0 Nov 27 05:12 boinc_lockfile
[2025-11-27 14:18:04] -rw-r--r--. 1 boincer umatlas      2773 Nov 27 05:12 pandaJob.out
[2025-11-27 14:18:04] -rw-------. 1 boincer umatlas    991551 Nov 27 05:12 agis_schedconf.cvmfs.json
[2025-11-27 14:18:04] drwx------. 5 boincer umatlas      4096 Nov 27 05:13 pilot3
[2025-11-27 14:18:04] -rw-r--r--. 1 boincer umatlas       532 Nov 27 14:04 boinc_task_state.xml
[2025-11-27 14:18:04] -rw-r--r--. 1 boincer umatlas      6948 Nov 27 14:11 init_data.xml
[2025-11-27 14:18:04] -rw-------. 1 boincer umatlas 922583705 Nov 27 14:15 HITS.47493068._003292.pool.root.1
[2025-11-27 14:18:04] -rw-------. 1 boincer umatlas      1048 Nov 27 14:16 memory_monitor_summary.json
[2025-11-27 14:18:04] -rw-------. 1 boincer umatlas   1516240 Nov 27 14:16 agis_ddmendpoints.agis.ALL.json
[2025-11-27 14:18:04] -rw-------. 1 boincer umatlas   1791240 Nov 27 14:16 log.47493068._003292.job.log.tgz.1
[2025-11-27 14:18:04] -rw-------. 1 boincer umatlas      8576 Nov 27 14:17 heartbeat.json
[2025-11-27 14:18:04] -rw-------. 1 boincer umatlas        95 Nov 27 14:17 pilot_heartbeat.json
[2025-11-27 14:18:04] -rw-------. 1 boincer umatlas      5126 Nov 27 14:18 pilotlog.txt
[2025-11-27 14:18:04] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 14:18 boinc_mmap_file
[2025-11-27 14:18:04] -rw-r--r--. 1 boincer umatlas        29 Nov 27 14:18 wrapper_checkpoint.txt
[2025-11-27 14:18:04] -rw-------. 1 boincer umatlas   4224271 Nov 27 14:18 log.47493068._003292.job.log.1
[2025-11-27 14:18:04] -rw-------. 1 boincer umatlas       353 Nov 27 14:18 output.list
[2025-11-27 14:18:04] -rw-r--r--. 1 boincer umatlas       620 Nov 27 14:18 runtime_log
[2025-11-27 14:18:04] -rw-------. 1 boincer umatlas   6031360 Nov 27 14:18 result.tar.gz
[2025-11-27 14:18:04] -rw-------. 1 boincer umatlas       659 Nov 27 14:18 yGjLDmgddf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmblFKDmjLLEIo.diag
[2025-11-27 14:18:04] -rw-r--r--. 1 boincer umatlas      8699 Nov 27 14:18 runtime_log.err
[2025-11-27 14:18:04] -rw-r--r--. 1 boincer umatlas     21319 Nov 27 14:18 stderr.txt
[2025-11-27 14:18:04] HITS file was successfully produced:
[2025-11-27 14:18:04] -rw-------. 1 boincer umatlas 922583705 Nov 27 14:15 shared/HITS.pool.root.1
[2025-11-27 14:18:04]  *** Contents of shared directory: ***
[2025-11-27 14:18:04] total 1307736
[2025-11-27 14:18:04] -rw-r--r--. 2 boincer umatlas 409880741 Nov 27 05:12 ATLAS.root_0
[2025-11-27 14:18:04] -rw-r--r--. 2 boincer umatlas     15120 Nov 27 05:12 start_atlas.sh
[2025-11-27 14:18:04] -rw-r--r--. 2 boincer umatlas    590096 Nov 27 05:12 input.tar.gz
[2025-11-27 14:18:04] -rw-------. 1 boincer umatlas 922583705 Nov 27 14:15 HITS.pool.root.1
[2025-11-27 14:18:04] -rw-------. 1 boincer umatlas   6031360 Nov 27 14:18 result.tar.gz
14:18:26 (2877514): run_atlas exited; CPU time 196305.173011
14:18:26 (2877514): called boinc_finish(0)

</stderr_txt>
]]>

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