Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:59:55 (3627720): wrapper (7.7.26015): starting
09:59:55 (3627720): wrapper: running run_atlas (--nthreads 3)
[2025-11-27 09:59:55] Arguments: --nthreads 3
[2025-11-27 09:59:55] Threads: 3
[2025-11-27 09:59:55] Checking for CVMFS
[2025-11-27 09:59:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 09:59:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 09:59:55] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 09:59:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 09:59:55] 2.9.2.0 3252557 80 63232 153357 0 88 35950574 36864001 0 130560 0 1126893 100.000 5250 21966 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-27 09:59:55] CVMFS is ok
[2025-11-27 09:59:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 09:59:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 09:59:55] Further information can be found at the LHC@home message board.
[2025-11-27 09:59:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 09:59:55] Checking for apptainer binary...
[2025-11-27 09:59:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 09:59:55] Running /usr/bin/apptainer --version
[2025-11-27 09:59:55] apptainer version 1.4.1-1.1
[2025-11-27 09:59:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 09:59:55] thA335
[2025-11-27 09:59:55] apptainer works
[2025-11-27 09:59:56] Set ATHENA_PROC_NUMBER=3
[2025-11-27 09:59:56] Set ATHENA_CORE_NUMBER=3
[2025-11-27 09:59:56] Starting ATLAS job with PandaID=6896922962
[2025-11-27 09:59:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 10:04:14]  *** The last 200 lines of the pilot log: ***
[2025-11-27 10:04:14] 2025-11-27 09:03:22,457 | INFO     | update_server=False
[2025-11-27 10:04:14] 2025-11-27 09:03:22,457 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 10:04:14] 2025-11-27 09:03:22,457 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 10:04:14] 2025-11-27 09:03:22,457 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 10:04:14] 2025-11-27 09:03:22,940 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 10:04:14] 2025-11-27 09:03:22,940 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 10:04:14] 2025-11-27 09:03:22,941 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 10:04:14] 2025-11-27 09:03:22,941 | INFO     | will abort loop
[2025-11-27 10:04:14] 2025-11-27 09:03:23,069 | INFO     | all data control threads have been joined
[2025-11-27 10:04:14] 2025-11-27 09:03:23,392 | INFO     | all payload control threads have been joined
[2025-11-27 10:04:14] 2025-11-27 09:03:23,463 | INFO     | [job] retrieve thread has finished
[2025-11-27 10:04:14] 2025-11-27 09:03:23,463 | INFO     | [job] queue monitor thread has finished
[2025-11-27 10:04:14] 2025-11-27 09:03:23,873 | INFO     | [payload] failed_post thread has finished
[2025-11-27 10:04:14] 2025-11-27 09:03:23,947 | INFO     | [job] job monitor thread has finished
[2025-11-27 10:04:14] 2025-11-27 09:03:23,994 | INFO     | [data] copytool_in thread has finished
[2025-11-27 10:04:14] 2025-11-27 09:03:23,995 | INFO     | all job control threads have been joined
[2025-11-27 10:04:14] 2025-11-27 09:03:24,030 | INFO     | [payload] validate_post thread has finished
[2025-11-27 10:04:14] 2025-11-27 09:03:24,076 | INFO     | [data] control thread has finished
[2025-11-27 10:04:14] 2025-11-27 09:03:24,245 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 10:04:14] 2025-11-27 09:03:24,382 | INFO     | [job] validate thread has finished
[2025-11-27 10:04:14] 2025-11-27 09:03:24,398 | INFO     | [payload] control thread has finished
[2025-11-27 10:04:14] 2025-11-27 09:03:24,457 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 10:04:14] 2025-11-27 09:03:24,463 | INFO     | [data] copytool_out thread has finished
[2025-11-27 10:04:14] 2025-11-27 09:03:24,533 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 10:04:14] 2025-11-27 09:03:24,886 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 10:04:14] 2025-11-27 09:03:25,001 | INFO     | [job] control thread has finished
[2025-11-27 10:04:14] 2025-11-27 09:03:25,079 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 10:04:14] 2025-11-27 09:03:29,086 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 10:04:14] 2025-11-27 09:03:52,715 | INFO     | PID=3631472 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 10:04:14] 2025-11-27 09:03:52,715 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 10:04:14] 2025-11-27 09:03:52,715 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 10:04:14] 2025-11-27 09:03:52,715 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 10:04:14] 2025-11-27 09:04:07,562 | INFO     | [monitor] cgroup control has ended
[2025-11-27 10:04:14] 2025-11-27 09:04:08,965 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140033245116224)>', '<ExcThread(monitor, started 140032744601344)>']
[2025-11-27 10:04:14] 2025-11-27 09:04:09,801 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 10:04:14] 2025-11-27 09:04:09,801 | INFO     | [monitor] control thread has ended
[2025-11-27 10:04:14] 2025-11-27 09:04:13,991 | INFO     | all workflow threads have been joined
[2025-11-27 10:04:14] 2025-11-27 09:04:13,992 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 10:04:14] 2025-11-27 09:04:13,992 | INFO     | traces error code: 0
[2025-11-27 10:04:14] 2025-11-27 09:04:13,993 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 10:04:14] 2025-11-27 09:04:14,038 [wrapper] ==== pilot stdout END ====
[2025-11-27 10:04:14] 2025-11-27 09:04:14,041 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 10:04:14] 2025-11-27 09:04:14,044 [wrapper] pilotpid: 3631472
[2025-11-27 10:04:14] 2025-11-27 09:04:14,047 [wrapper] Pilot exit status: 0
[2025-11-27 10:04:14] 2025-11-27 09:04:14,055 [wrapper] pandaids: 6896922962
[2025-11-27 10:04:14] 2025-11-27 09:04:14,072 [wrapper] cleanup supervisor_pilot 3631478 3631473
[2025-11-27 10:04:14] 2025-11-27 09:04:14,074 [wrapper] Test setup, not cleaning
[2025-11-27 10:04:14] 2025-11-27 09:04:14,077 [wrapper] apfmon messages muted
[2025-11-27 10:04:14] 2025-11-27 09:04:14,079 [wrapper] ==== wrapper stdout END ====
[2025-11-27 10:04:14] 2025-11-27 09:04:14,082 [wrapper] ==== wrapper stderr END ====
[2025-11-27 10:04:14]  *** Error codes and diagnostics ***
[2025-11-27 10:04:14]     "exeErrorCode": 65,
[2025-11-27 10:04:14]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-27 10:04:14]     "pilotErrorCode": 1305,
[2025-11-27 10:04:14]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-27 10:04:14]  *** Listing of results directory ***
[2025-11-27 10:04:14] total 408332
[2025-11-27 10:04:14] -rw-r--r-- 1 boinc boinc    576529 Nov 25 11:51 pilot3.tar.gz
[2025-11-27 10:04:14] -rw-r--r-- 1 boinc boinc      5112 Nov 25 12:16 queuedata.json
[2025-11-27 10:04:14] -rwx------ 1 boinc boinc     36292 Nov 25 12:16 runpilot2-wrapper.sh
[2025-11-27 10:04:14] -rw-r--r-- 1 boinc boinc       100 Nov 27 09:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 10:04:14] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 09:59 run_atlas
[2025-11-27 10:04:14] -rw-r--r-- 1 boinc boinc       105 Nov 27 09:59 job.xml
[2025-11-27 10:04:14] -rw-r--r-- 2 boinc boinc 413930896 Nov 27 09:59 EVNT.47483658._002146.pool.root.1
[2025-11-27 10:04:14] -rw-r--r-- 2 boinc boinc    590101 Nov 27 09:59 input.tar.gz
[2025-11-27 10:04:14] -rw-r--r-- 2 boinc boinc     15847 Nov 27 09:59 start_atlas.sh
[2025-11-27 10:04:14] drwxrwx--x 2 boinc boinc      4096 Nov 27 09:59 shared
[2025-11-27 10:04:14] -rw-r--r-- 1 boinc boinc         0 Nov 27 09:59 boinc_setup_complete
[2025-11-27 10:04:14] -rw-r--r-- 1 boinc boinc      6196 Nov 27 09:59 init_data.xml
[2025-11-27 10:04:14] -rw-r--r-- 1 boinc boinc         0 Nov 27 09:59 boinc_lockfile
[2025-11-27 10:04:14] -rw-r--r-- 1 boinc boinc      2784 Nov 27 09:59 pandaJob.out
[2025-11-27 10:04:14] -rw------- 1 boinc boinc    991573 Nov 27 10:00 agis_schedconf.cvmfs.json
[2025-11-27 10:04:14] -rw------- 1 boinc boinc   1516240 Nov 27 10:00 agis_ddmendpoints.agis.ALL.json
[2025-11-27 10:04:14] drwx------ 5 boinc boinc      4096 Nov 27 10:00 pilot3
[2025-11-27 10:04:14] -rw-r--r-- 1 boinc boinc       522 Nov 27 10:01 boinc_task_state.xml
[2025-11-27 10:04:14] -rw------- 1 boinc boinc       954 Nov 27 10:01 memory_monitor_summary.json
[2025-11-27 10:04:14] -rw------- 1 boinc boinc     55884 Nov 27 10:01 log.47556161._001294.job.log.tgz.1
[2025-11-27 10:04:14] -rw------- 1 boinc boinc        95 Nov 27 10:03 pilot_heartbeat.json
[2025-11-27 10:04:14] -rw------- 1 boinc boinc      8402 Nov 27 10:03 heartbeat.json
[2025-11-27 10:04:14] -rw-r--r-- 1 boinc boinc      8192 Nov 27 10:04 boinc_mmap_file
[2025-11-27 10:04:14] -rw-r--r-- 1 boinc boinc        22 Nov 27 10:04 wrapper_checkpoint.txt
[2025-11-27 10:04:14] -rw------- 1 boinc boinc      4938 Nov 27 10:04 pilotlog.txt
[2025-11-27 10:04:14] -rw------- 1 boinc boinc     93659 Nov 27 10:04 log.47556161._001294.job.log.1
[2025-11-27 10:04:14] -rw------- 1 boinc boinc       186 Nov 27 10:04 output.list
[2025-11-27 10:04:14] -rw-r--r-- 1 boinc boinc       620 Nov 27 10:04 runtime_log
[2025-11-27 10:04:14] -rw------- 1 boinc boinc    174080 Nov 27 10:04 result.tar.gz
[2025-11-27 10:04:14] -rw-r--r-- 1 boinc boinc      8744 Nov 27 10:04 runtime_log.err
[2025-11-27 10:04:14] -rw------- 1 boinc boinc       649 Nov 27 10:04 Qz7KDmWD6h8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmtRJKDm0mQNxn.diag
[2025-11-27 10:04:14] -rw-r--r-- 1 boinc boinc      8019 Nov 27 10:04 stderr.txt
[2025-11-27 10:04:14] No HITS result produced
[2025-11-27 10:04:14]  *** Contents of shared directory: ***
[2025-11-27 10:04:14] total 405004
[2025-11-27 10:04:14] -rw-r--r-- 2 boinc boinc 413930896 Nov 27 09:59 ATLAS.root_0
[2025-11-27 10:04:14] -rw-r--r-- 2 boinc boinc    590101 Nov 27 09:59 input.tar.gz
[2025-11-27 10:04:14] -rw-r--r-- 2 boinc boinc     15847 Nov 27 09:59 start_atlas.sh
[2025-11-27 10:04:14] -rw------- 1 boinc boinc    174080 Nov 27 10:04 result.tar.gz
10:04:16 (3627720): run_atlas exited; CPU time 31.709251
10:04:16 (3627720): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN