Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:08:41 (3669348): wrapper (7.7.26015): starting
10:08:41 (3669348): wrapper: running run_atlas (--nthreads 3)
[2025-11-27 10:08:41] Arguments: --nthreads 3
[2025-11-27 10:08:41] Threads: 3
[2025-11-27 10:08:41] Checking for CVMFS
[2025-11-27 10:08:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 10:08:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 10:08:41] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 10:08:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 10:08:41] 2.9.2.0 3252557 89 63164 153357 3 88 35955008 36864001 0 130560 0 1252108 100.000 5251 21345 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-27 10:08:41] CVMFS is ok
[2025-11-27 10:08:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 10:08:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 10:08:41] Further information can be found at the LHC@home message board.
[2025-11-27 10:08:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 10:08:41] Checking for apptainer binary...
[2025-11-27 10:08:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 10:08:41] Running /usr/bin/apptainer --version
[2025-11-27 10:08:41] apptainer version 1.4.1-1.1
[2025-11-27 10:08:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 10:08:41] thA335
[2025-11-27 10:08:41] apptainer works
[2025-11-27 10:08:41] Set ATHENA_PROC_NUMBER=3
[2025-11-27 10:08:41] Set ATHENA_CORE_NUMBER=3
[2025-11-27 10:08:41] Starting ATLAS job with PandaID=6891565176
[2025-11-27 10:08:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 10:13:00]  *** The last 200 lines of the pilot log: ***
[2025-11-27 10:13:00] 2025-11-27 09:12:12,045 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 10:13:00] 2025-11-27 09:12:12,045 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 10:13:00] 2025-11-27 09:12:12,045 | INFO     | update_server=False
[2025-11-27 10:13:00] 2025-11-27 09:12:12,046 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 10:13:00] 2025-11-27 09:12:12,046 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 10:13:00] 2025-11-27 09:12:12,046 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 10:13:00] 2025-11-27 09:12:12,046 | INFO     | aborting loop
[2025-11-27 10:13:00] 2025-11-27 09:12:12,848 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 10:13:00] 2025-11-27 09:12:12,951 | INFO     | all job control threads have been joined
[2025-11-27 10:13:00] 2025-11-27 09:12:13,051 | INFO     | [job] queue monitor thread has finished
[2025-11-27 10:13:00] 2025-11-27 09:12:13,052 | INFO     | [job] retrieve thread has finished
[2025-11-27 10:13:00] 2025-11-27 09:12:13,053 | INFO     | [job] job monitor thread has finished
[2025-11-27 10:13:00] 2025-11-27 09:12:13,077 | INFO     | all data control threads have been joined
[2025-11-27 10:13:00] 2025-11-27 09:12:13,087 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 10:13:00] 2025-11-27 09:12:13,087 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 10:13:00] 2025-11-27 09:12:13,091 | INFO     | [data] copytool_in thread has finished
[2025-11-27 10:13:00] 2025-11-27 09:12:13,285 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 10:13:00] 2025-11-27 09:12:13,532 | INFO     | all payload control threads have been joined
[2025-11-27 10:13:00] 2025-11-27 09:12:13,668 | INFO     | [payload] failed_post thread has finished
[2025-11-27 10:13:00] 2025-11-27 09:12:13,957 | INFO     | [job] control thread has finished
[2025-11-27 10:13:00] 2025-11-27 09:12:14,083 | INFO     | [data] control thread has finished
[2025-11-27 10:13:00] 2025-11-27 09:12:14,389 | INFO     | [payload] validate_post thread has finished
[2025-11-27 10:13:00] 2025-11-27 09:12:14,457 | INFO     | [job] validate thread has finished
[2025-11-27 10:13:00] 2025-11-27 09:12:14,538 | INFO     | [payload] control thread has finished
[2025-11-27 10:13:00] 2025-11-27 09:12:14,547 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 10:13:00] 2025-11-27 09:12:14,854 | INFO     | [data] copytool_out thread has finished
[2025-11-27 10:13:00] 2025-11-27 09:12:15,126 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 10:13:00] 2025-11-27 09:12:19,133 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 10:13:00] 2025-11-27 09:12:42,122 | INFO     | PID=3673087 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 10:13:00] 2025-11-27 09:12:42,122 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 10:13:00] 2025-11-27 09:12:42,122 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 10:13:00] 2025-11-27 09:12:42,123 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 10:13:00] 2025-11-27 09:12:53,098 | INFO     | [monitor] cgroup control has ended
[2025-11-27 10:13:00] 2025-11-27 09:12:54,996 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139864490309440)>', '<ExcThread(monitor, started 139863839983360)>']
[2025-11-27 10:13:00] 2025-11-27 09:12:55,191 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 10:13:00] 2025-11-27 09:12:55,191 | INFO     | [monitor] control thread has ended
[2025-11-27 10:13:00] 2025-11-27 09:13:00,004 | INFO     | all workflow threads have been joined
[2025-11-27 10:13:00] 2025-11-27 09:13:00,005 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 10:13:00] 2025-11-27 09:13:00,005 | INFO     | traces error code: 0
[2025-11-27 10:13:00] 2025-11-27 09:13:00,006 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 10:13:00] 2025-11-27 09:13:00,052 [wrapper] ==== pilot stdout END ====
[2025-11-27 10:13:00] 2025-11-27 09:13:00,056 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 10:13:00] 2025-11-27 09:13:00,059 [wrapper] pilotpid: 3673087
[2025-11-27 10:13:00] 2025-11-27 09:13:00,062 [wrapper] Pilot exit status: 0
[2025-11-27 10:13:00] 2025-11-27 09:13:00,069 [wrapper] pandaids: 6891565176
[2025-11-27 10:13:00] 2025-11-27 09:13:00,085 [wrapper] cleanup supervisor_pilot 3673093 3673088
[2025-11-27 10:13:00] 2025-11-27 09:13:00,088 [wrapper] Test setup, not cleaning
[2025-11-27 10:13:00] 2025-11-27 09:13:00,090 [wrapper] apfmon messages muted
[2025-11-27 10:13:00] 2025-11-27 09:13:00,092 [wrapper] ==== wrapper stdout END ====
[2025-11-27 10:13:00] 2025-11-27 09:13:00,094 [wrapper] ==== wrapper stderr END ====
[2025-11-27 10:13:00]  *** Error codes and diagnostics ***
[2025-11-27 10:13:00]     "exeErrorCode": 65,
[2025-11-27 10:13:00]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-27 10:13:00]     "pilotErrorCode": 1305,
[2025-11-27 10:13:00]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-27 10:13:00]  *** Listing of results directory ***
[2025-11-27 10:13:00] total 402968
[2025-11-27 10:13:00] -rw-r--r-- 1 boinc boinc    576529 Nov 18 16:15 pilot3.tar.gz
[2025-11-27 10:13:00] -rw-r--r-- 1 boinc boinc      5112 Nov 18 16:29 queuedata.json
[2025-11-27 10:13:00] -rwx------ 1 boinc boinc     36292 Nov 18 16:30 runpilot2-wrapper.sh
[2025-11-27 10:13:00] -rw-r--r-- 1 boinc boinc       100 Nov 27 10:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 10:13:00] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 10:08 run_atlas
[2025-11-27 10:13:00] -rw-r--r-- 1 boinc boinc       105 Nov 27 10:08 job.xml
[2025-11-27 10:13:00] -rw-r--r-- 2 boinc boinc 408440225 Nov 27 10:08 EVNT.47493065._000137.pool.root.1
[2025-11-27 10:13:00] -rw-r--r-- 2 boinc boinc    590102 Nov 27 10:08 input.tar.gz
[2025-11-27 10:13:00] -rw-r--r-- 2 boinc boinc     15120 Nov 27 10:08 start_atlas.sh
[2025-11-27 10:13:00] drwxrwx--x 2 boinc boinc      4096 Nov 27 10:08 shared
[2025-11-27 10:13:00] -rw-r--r-- 1 boinc boinc         0 Nov 27 10:08 boinc_setup_complete
[2025-11-27 10:13:00] -rw-r--r-- 1 boinc boinc      6196 Nov 27 10:08 init_data.xml
[2025-11-27 10:13:00] -rw-r--r-- 1 boinc boinc         0 Nov 27 10:08 boinc_lockfile
[2025-11-27 10:13:00] -rw-r--r-- 1 boinc boinc      2773 Nov 27 10:08 pandaJob.out
[2025-11-27 10:13:00] -rw------- 1 boinc boinc    991573 Nov 27 10:08 agis_schedconf.cvmfs.json
[2025-11-27 10:13:00] -rw------- 1 boinc boinc   1516240 Nov 27 10:08 agis_ddmendpoints.agis.ALL.json
[2025-11-27 10:13:00] drwx------ 5 boinc boinc      4096 Nov 27 10:08 pilot3
[2025-11-27 10:13:00] -rw-r--r-- 1 boinc boinc       523 Nov 27 10:09 boinc_task_state.xml
[2025-11-27 10:13:00] -rw------- 1 boinc boinc       939 Nov 27 10:10 memory_monitor_summary.json
[2025-11-27 10:13:00] -rw------- 1 boinc boinc     55847 Nov 27 10:10 log.47493068._001363.job.log.tgz.1
[2025-11-27 10:13:00] -rw------- 1 boinc boinc        95 Nov 27 10:11 pilot_heartbeat.json
[2025-11-27 10:13:00] -rw------- 1 boinc boinc      8403 Nov 27 10:12 heartbeat.json
[2025-11-27 10:13:00] -rw-r--r-- 1 boinc boinc      8192 Nov 27 10:12 boinc_mmap_file
[2025-11-27 10:13:00] -rw-r--r-- 1 boinc boinc        23 Nov 27 10:12 wrapper_checkpoint.txt
[2025-11-27 10:13:00] -rw------- 1 boinc boinc      4752 Nov 27 10:13 pilotlog.txt
[2025-11-27 10:13:00] -rw------- 1 boinc boinc     93649 Nov 27 10:13 log.47493068._001363.job.log.1
[2025-11-27 10:13:00] -rw------- 1 boinc boinc       186 Nov 27 10:13 output.list
[2025-11-27 10:13:00] -rw-r--r-- 1 boinc boinc       620 Nov 27 10:13 runtime_log
[2025-11-27 10:13:00] -rw------- 1 boinc boinc    174080 Nov 27 10:13 result.tar.gz
[2025-11-27 10:13:00] -rw-r--r-- 1 boinc boinc      8624 Nov 27 10:13 runtime_log.err
[2025-11-27 10:13:00] -rw------- 1 boinc boinc       649 Nov 27 10:13 YKfLDmWqcf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmYSFKDmas5EXo.diag
[2025-11-27 10:13:00] -rw-r--r-- 1 boinc boinc      8018 Nov 27 10:13 stderr.txt
[2025-11-27 10:13:00] No HITS result produced
[2025-11-27 10:13:00]  *** Contents of shared directory: ***
[2025-11-27 10:13:00] total 399640
[2025-11-27 10:13:00] -rw-r--r-- 2 boinc boinc 408440225 Nov 27 10:08 ATLAS.root_0
[2025-11-27 10:13:00] -rw-r--r-- 2 boinc boinc    590102 Nov 27 10:08 input.tar.gz
[2025-11-27 10:13:00] -rw-r--r-- 2 boinc boinc     15120 Nov 27 10:08 start_atlas.sh
[2025-11-27 10:13:00] -rw------- 1 boinc boinc    174080 Nov 27 10:13 result.tar.gz
10:13:01 (3669348): run_atlas exited; CPU time 32.127465
10:13:01 (3669348): called boinc_finish(0)

</stderr_txt>
]]>

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