Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
04:04:20 (29024): wrapper (7.7.26015): starting
04:04:20 (29024): wrapper: running run_atlas (--nthreads 4)
[2025-11-27 04:04:20] Arguments: --nthreads 4
[2025-11-27 04:04:20] Threads: 4
[2025-11-27 04:04:20] Checking for CVMFS
[2025-11-27 04:04:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 04:04:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 04:04:20] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 04:04:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 04:04:21] 2.11.2.0 2311 108680 72876 153357 3 81 17974607 20275200 1 130560 0 41421159 99.941 4746453 41039 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 04:04:21] CVMFS is ok
[2025-11-27 04:04:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 04:04:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 04:04:21] Further information can be found at the LHC@home message board.
[2025-11-27 04:04:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 04:04:21] Checking for apptainer binary...
[2025-11-27 04:04:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 04:04:21] Running /usr/bin/apptainer --version
[2025-11-27 04:04:21] apptainer version 1.3.2-1.el7
[2025-11-27 04:04:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 04:04:21] c-205-34.aglt2.org
[2025-11-27 04:04:21] apptainer works
[2025-11-27 04:04:21] Set ATHENA_PROC_NUMBER=4
[2025-11-27 04:04:21] Set ATHENA_CORE_NUMBER=4
[2025-11-27 04:04:21] Starting ATLAS job with PandaID=6896989988
[2025-11-27 04:04:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
08:48:04 (32273): wrapper (7.7.26015): starting
08:48:04 (32273): wrapper: running run_atlas (--nthreads 4)
[2025-11-27 08:48:04] Arguments: --nthreads 4
[2025-11-27 08:48:04] Threads: 4
[2025-11-27 08:48:04] This job has been restarted, cleaning up previous attempt
[2025-11-27 08:48:04] Checking for CVMFS
[2025-11-27 08:48:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 08:48:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 08:48:04] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 08:48:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 08:48:04] 2.11.2.0 2311 108963 81908 153366 0 49 18366000 20275200 1 130560 0 41544399 99.941 4757064 41069 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 08:48:04] CVMFS is ok
[2025-11-27 08:48:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 08:48:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 08:48:04] Further information can be found at the LHC@home message board.
[2025-11-27 08:48:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 08:48:04] Checking for apptainer binary...
[2025-11-27 08:48:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 08:48:04] Running /usr/bin/apptainer --version
[2025-11-27 08:48:04] apptainer version 1.3.2-1.el7
[2025-11-27 08:48:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 08:48:05] c-205-34.aglt2.org
[2025-11-27 08:48:05] apptainer works
[2025-11-27 08:48:05] Set ATHENA_PROC_NUMBER=4
[2025-11-27 08:48:05] Set ATHENA_CORE_NUMBER=4
[2025-11-27 08:48:05] Starting ATLAS job with PandaID=6896989988
[2025-11-27 08:48:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 17:47:14]  *** The last 200 lines of the pilot log: ***
[2025-11-27 17:47:14] 2025-11-27 22:46:39,920 | INFO     | maximum number of monitored processes: 12
[2025-11-27 17:47:14] 2025-11-27 22:46:41,525 | INFO     | time since job start (32306s) is within the limit (172800.0s)
[2025-11-27 17:47:14] 2025-11-27 22:46:42,423 | INFO     | monitor loop #2409: job 0:6896989988 is in state 'finished'
[2025-11-27 17:47:14] 2025-11-27 22:46:42,423 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 17:47:14] 2025-11-27 22:46:42,821 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 17:47:14] 2025-11-27 22:46:42,822 | INFO     | found 4 cores (4 cores per socket, 1 socket) , CPU MHz: 3379.34825
[2025-11-27 17:47:14] 2025-11-27 22:46:42,823 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6896989988/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 17:47:14] 2025-11-27 22:46:42,823 | INFO     | extracted standard info from prmon json
[2025-11-27 17:47:14] 2025-11-27 22:46:42,823 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 17:47:14] 2025-11-27 22:46:42,823 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 17:47:14] 2025-11-27 22:46:42,827 | INFO     | fitting pss+swap vs Time
[2025-11-27 17:47:14] 2025-11-27 22:46:42,827 | INFO     | sum of square deviations: 46164112072.5
[2025-11-27 17:47:14] 2025-11-27 22:46:42,830 | INFO     | sum of deviations: 146795592625.00006
[2025-11-27 17:47:14] 2025-11-27 22:46:42,830 | INFO     | mean x: 1764267451.5
[2025-11-27 17:47:14] 2025-11-27 22:46:42,830 | INFO     | mean y: 2264548.0528301885
[2025-11-27 17:47:14] 2025-11-27 22:46:42,830 | INFO     | intersect: -5607865799.200608
[2025-11-27 17:47:14] 2025-11-27 22:46:42,831 | INFO     | chi2: 3.3602927317218345
[2025-11-27 17:47:14] 2025-11-27 22:46:42,831 | INFO     | sum of square deviations: 44869864550.0
[2025-11-27 17:47:14] 2025-11-27 22:46:42,834 | INFO     | sum of deviations: 235039653758.0
[2025-11-27 17:47:14] 2025-11-27 22:46:42,834 | INFO     | mean x: 1764267299.0
[2025-11-27 17:47:14] 2025-11-27 22:46:42,834 | INFO     | mean y: 2274904.9695238094
[2025-11-27 17:47:14] 2025-11-27 22:46:42,834 | INFO     | intersect: -9239401646.815874
[2025-11-27 17:47:14] 2025-11-27 22:46:42,834 | INFO     | chi2: 1.2167272092667243
[2025-11-27 17:47:14] 2025-11-27 22:46:42,835 | INFO     | current chi2=1.2167272092667243 (change=63.79103529342618 %)
[2025-11-27 17:47:14] 2025-11-27 22:46:42,835 | INFO     | sum of square deviations: 43600036090.0
[2025-11-27 17:47:14] 2025-11-27 22:46:42,838 | INFO     | sum of deviations: 230429706888.49997
[2025-11-27 17:47:14] 2025-11-27 22:46:42,838 | INFO     | mean x: 1764267146.5
[2025-11-27 17:47:14] 2025-11-27 22:46:42,838 | INFO     | mean y: 2274351.221153846
[2025-11-27 17:47:14] 2025-11-27 22:46:42,838 | INFO     | intersect: -9322019798.485943
[2025-11-27 17:47:14] 2025-11-27 22:46:42,838 | INFO     | chi2: 1.2165801117081712
[2025-11-27 17:47:14] 2025-11-27 22:46:42,838 | INFO     | current chi2=1.2165801117081712 (change=0.012089608700522385 %)
[2025-11-27 17:47:14] 2025-11-27 22:46:42,838 | INFO     | right removable region: 519
[2025-11-27 17:47:14] 2025-11-27 22:46:42,839 | INFO     | sum of square deviations: 44869864550.0
[2025-11-27 17:47:14] 2025-11-27 22:46:42,842 | INFO     | sum of deviations: 88050732796.0
[2025-11-27 17:47:14] 2025-11-27 22:46:42,842 | INFO     | mean x: 1764267604.0
[2025-11-27 17:47:14] 2025-11-27 22:46:42,842 | INFO     | mean y: 2271433.1161904763
[2025-11-27 17:47:14] 2025-11-27 22:46:42,842 | INFO     | intersect: -3459853022.5379357
[2025-11-27 17:47:14] 2025-11-27 22:46:42,842 | INFO     | chi2: 2.20340269302496
[2025-11-27 17:47:14] 2025-11-27 22:46:42,842 | INFO     | current chi2=2.20340269302496 (change=34.42825167508775 %)
[2025-11-27 17:47:14] 2025-11-27 22:46:42,842 | INFO     | sum of square deviations: 43600036090.0
[2025-11-27 17:47:14] 2025-11-27 22:46:42,845 | INFO     | sum of deviations: 85034875563.5
[2025-11-27 17:47:14] 2025-11-27 22:46:42,845 | INFO     | mean x: 1764267756.5
[2025-11-27 17:47:14] 2025-11-27 22:46:42,845 | INFO     | mean y: 2271794.3596153846
[2025-11-27 17:47:14] 2025-11-27 22:46:42,846 | INFO     | intersect: -3438649420.1318107
[2025-11-27 17:47:14] 2025-11-27 22:46:42,846 | INFO     | chi2: 2.203254077318097
[2025-11-27 17:47:14] 2025-11-27 22:46:42,846 | INFO     | current chi2=2.203254077318097 (change=0.006744827322465434 %)
[2025-11-27 17:47:14] 2025-11-27 22:46:42,846 | INFO     | left removable region: 20
[2025-11-27 17:47:14] 2025-11-27 22:46:42,846 | INFO     | sum of square deviations: 38528164250.0
[2025-11-27 17:47:14] 2025-11-27 22:46:42,849 | INFO     | sum of deviations: 166337486683.9999
[2025-11-27 17:47:14] 2025-11-27 22:46:42,849 | INFO     | mean x: 1764267726.0
[2025-11-27 17:47:14] 2025-11-27 22:46:42,849 | INFO     | mean y: 2281980.4328657314
[2025-11-27 17:47:14] 2025-11-27 22:46:42,849 | INFO     | intersect: -7614583891.408817
[2025-11-27 17:47:14] 2025-11-27 22:46:42,850 | INFO     | chi2: 0.0352876039143505
[2025-11-27 17:47:14] 2025-11-27 22:46:42,850 | INFO     | current memory leak: 4.32 B/s (using 499 data points, chi2=0.04)
[2025-11-27 17:47:14] 2025-11-27 22:46:42,850 | INFO     | could have reported an average CPU frequency of 3172 MHz (21 samples)
[2025-11-27 17:47:14] 2025-11-27 22:46:42,850 | INFO     | ..............................
[2025-11-27 17:47:14] 2025-11-27 22:46:42,850 | INFO     | . Timing measurements:
[2025-11-27 17:47:14] 2025-11-27 22:46:42,850 | INFO     | . get job = 0 s
[2025-11-27 17:47:14] 2025-11-27 22:46:42,850 | INFO     | . initial setup = 1 s
[2025-11-27 17:47:14] 2025-11-27 22:46:42,850 | INFO     | . payload setup = 3 s
[2025-11-27 17:47:14] 2025-11-27 22:46:42,850 | INFO     | . stage-in = 0 s
[2025-11-27 17:47:14] 2025-11-27 22:46:42,850 | INFO     | . payload execution = 32277 s
[2025-11-27 17:47:14] 2025-11-27 22:46:42,850 | INFO     | . stage-out = 2 s
[2025-11-27 17:47:14] 2025-11-27 22:46:42,851 | INFO     | . log creation = 0 s
[2025-11-27 17:47:14] 2025-11-27 22:46:42,851 | INFO     | ..............................
[2025-11-27 17:47:14] 2025-11-27 22:46:43,346 | INFO     | 
[2025-11-27 17:47:14] 2025-11-27 22:46:43,346 | INFO     | job summary report
[2025-11-27 17:47:14] 2025-11-27 22:46:43,346 | INFO     | --------------------------------------------------
[2025-11-27 17:47:14] 2025-11-27 22:46:43,346 | INFO     | PanDA job id: 6896989988
[2025-11-27 17:47:14] 2025-11-27 22:46:43,346 | INFO     | task id: 47556161
[2025-11-27 17:47:14] 2025-11-27 22:46:43,346 | INFO     | errors: (none)
[2025-11-27 17:47:14] 2025-11-27 22:46:43,346 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 17:47:14] 2025-11-27 22:46:43,346 | INFO     | pilot state: finished 
[2025-11-27 17:47:14] 2025-11-27 22:46:43,346 | INFO     | transexitcode: 0
[2025-11-27 17:47:14] 2025-11-27 22:46:43,346 | INFO     | exeerrorcode: 0
[2025-11-27 17:47:14] 2025-11-27 22:46:43,347 | INFO     | exeerrordiag: 
[2025-11-27 17:47:14] 2025-11-27 22:46:43,347 | INFO     | exitcode: 0
[2025-11-27 17:47:14] 2025-11-27 22:46:43,347 | INFO     | exitmsg: OK
[2025-11-27 17:47:14] 2025-11-27 22:46:43,347 | INFO     | cpuconsumptiontime: 127387 s
[2025-11-27 17:47:14] 2025-11-27 22:46:43,347 | INFO     | nevents: 1000
[2025-11-27 17:47:14] 2025-11-27 22:46:43,347 | INFO     | neventsw: 0
[2025-11-27 17:47:14] 2025-11-27 22:46:43,347 | INFO     | pid: 10344
[2025-11-27 17:47:14] 2025-11-27 22:46:43,347 | INFO     | pgrp: 10344
[2025-11-27 17:47:14] 2025-11-27 22:46:43,347 | INFO     | corecount: 4
[2025-11-27 17:47:14] 2025-11-27 22:46:43,347 | INFO     | event service: False
[2025-11-27 17:47:14] 2025-11-27 22:46:43,347 | INFO     | sizes: {0: 2284263, 3: 2284525, 10: 2284553, 32285: 2325069, 32288: 2334119, 32294: 2334309}
[2025-11-27 17:47:14] 2025-11-27 22:46:43,347 | INFO     | --------------------------------------------------
[2025-11-27 17:47:14] 2025-11-27 22:46:43,347 | INFO     | 
[2025-11-27 17:47:14] 2025-11-27 22:46:43,348 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-27 17:47:14] 2025-11-27 22:46:43,368 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 17:47:14] 2025-11-27 22:46:43,369 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 17:47:14] 2025-11-27 22:46:43,369 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 17:47:14] 2025-11-27 22:46:43,369 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 17:47:14] 2025-11-27 22:46:43,369 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 17:47:14] 2025-11-27 22:46:43,369 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 17:47:14] 2025-11-27 22:46:43,369 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 17:47:14] 2025-11-27 22:46:43,369 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 17:47:14] 2025-11-27 22:46:43,369 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 17:47:14] 2025-11-27 22:46:43,370 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 17:47:14] 2025-11-27 22:46:43,370 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 17:47:14] 2025-11-27 22:46:43,370 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 17:47:14] 2025-11-27 22:46:43,370 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 17:47:14] 2025-11-27 22:46:43,370 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 17:47:14] 2025-11-27 22:46:43,370 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 17:47:14] 2025-11-27 22:46:43,370 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 17:47:14] 2025-11-27 22:46:43,370 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 17:47:14] 2025-11-27 22:46:43,370 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 17:47:14] 2025-11-27 22:46:43,371 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 17:47:14] 2025-11-27 22:46:43,371 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 17:47:14] 2025-11-27 22:46:43,371 | INFO     | job 6896989988 has completed (purged errors)
[2025-11-27 17:47:14] 2025-11-27 22:46:43,371 | INFO     | overall cleanup function is called
[2025-11-27 17:47:14] 2025-11-27 22:46:44,379 | INFO     | --- collectZombieJob: --- 10, [10344]
[2025-11-27 17:47:14] 2025-11-27 22:46:44,379 | INFO     | zombie collector waiting for pid 10344
[2025-11-27 17:47:14] 2025-11-27 22:46:44,379 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 17:47:14] 2025-11-27 22:46:44,379 | INFO     | collected zombie processes
[2025-11-27 17:47:14] 2025-11-27 22:46:44,379 | INFO     | will attempt to kill all subprocesses of pid=10344
[2025-11-27 17:47:14] 2025-11-27 22:46:44,410 | INFO     | process IDs to be killed: [10344] (in reverse order)
[2025-11-27 17:47:14] 2025-11-27 22:46:44,432 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 17:47:14] 2025-11-27 22:46:44,432 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 17:47:14] 2025-11-27 22:46:44,433 | INFO     | did not find any defunct processes belonging to 10344
[2025-11-27 17:47:14] 2025-11-27 22:46:44,434 | INFO     | did not find any defunct processes belonging to 10344
[2025-11-27 17:47:14] 2025-11-27 22:46:44,434 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 17:47:14] 2025-11-27 22:46:44,435 | INFO     | ready for new job
[2025-11-27 17:47:14] 2025-11-27 22:46:44,435 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 17:47:14] 2025-11-27 22:46:44,436 | INFO     | ***************************************
[2025-11-27 17:47:14] 2025-11-27 22:46:44,436 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 17:47:14] 2025-11-27 22:46:44,436 | INFO     | ***************************************
[2025-11-27 17:47:14] 2025-11-27 22:46:44,437 | INFO     | 
[2025-11-27 17:47:14] 2025-11-27 22:46:44,437 | INFO     | architecture information:
[2025-11-27 17:47:14] 2025-11-27 22:46:44,437 | INFO     | executing command: cat /etc/os-release
[2025-11-27 17:47:14] 2025-11-27 22:46:44,445 | INFO     | cat /etc/os-release:
[2025-11-27 17:47:14] NAME="CentOS Linux"
[2025-11-27 17:47:14] VERSION="7 (Core)"
[2025-11-27 17:47:14] ID="centos"
[2025-11-27 17:47:14] ID_LIKE="rhel fedora"
[2025-11-27 17:47:14] VERSION_ID="7"
[2025-11-27 17:47:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 17:47:14] ANSI_COLOR="0;31"
[2025-11-27 17:47:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 17:47:14] HOME_URL="https://www.centos.org/"
[2025-11-27 17:47:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 17:47:14] 
[2025-11-27 17:47:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 17:47:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 17:47:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 17:47:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 17:47:14] 
[2025-11-27 17:47:14] 2025-11-27 22:46:44,445 | INFO     | ***************************************
[2025-11-27 17:47:14] 2025-11-27 22:46:44,948 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-27 17:47:14] 2025-11-27 22:46:44,965 | INFO     | sufficient remaining disk space (28252831744 B)
[2025-11-27 17:47:14] 2025-11-27 22:46:44,965 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 17:47:14] 2025-11-27 22:46:44,966 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 17:47:14] 2025-11-27 22:46:44,966 | INFO     | update_server=False
[2025-11-27 17:47:14] 2025-11-27 22:46:44,966 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 17:47:14] 2025-11-27 22:46:44,966 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 17:47:14] 2025-11-27 22:46:45,360 | INFO     | all payload control threads have been joined
[2025-11-27 17:47:14] 2025-11-27 22:46:45,495 | INFO     | all data control threads have been joined
[2025-11-27 17:47:14] 2025-11-27 22:46:45,931 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 17:47:14] 2025-11-27 22:46:45,931 | INFO     | aborting loop
[2025-11-27 17:47:14] 2025-11-27 22:46:45,968 | INFO     | [job] retrieve thread has finished
[2025-11-27 17:47:14] 2025-11-27 22:46:46,061 | INFO     | all job control threads have been joined
[2025-11-27 17:47:14] 2025-11-27 22:46:46,090 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 17:47:14] 2025-11-27 22:46:46,246 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 17:47:14] 2025-11-27 22:46:46,321 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 17:47:14] 2025-11-27 22:46:46,362 | INFO     | [payload] control thread has finished
[2025-11-27 17:47:14] 2025-11-27 22:46:46,501 | INFO     | [data] control thread has finished
[2025-11-27 17:47:14] 2025-11-27 22:46:46,935 | INFO     | [job] job monitor thread has finished
[2025-11-27 17:47:14] 2025-11-27 22:46:46,972 | INFO     | [data] copytool_out thread has finished
[2025-11-27 17:47:14] 2025-11-27 22:46:47,062 | INFO     | [job] control thread has finished
[2025-11-27 17:47:14] 2025-11-27 22:46:47,162 | INFO     | [payload] validate_post thread has finished
[2025-11-27 17:47:14] 2025-11-27 22:46:47,200 | INFO     | [payload] failed_post thread has finished
[2025-11-27 17:47:14] 2025-11-27 22:46:47,201 | INFO     | [job] validate thread has finished
[2025-11-27 17:47:14] 2025-11-27 22:46:47,208 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 17:47:14] 2025-11-27 22:46:47,375 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 17:47:14] 2025-11-27 22:46:47,421 | INFO     | [data] copytool_in thread has finished
[2025-11-27 17:47:14] 2025-11-27 22:46:47,894 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 17:47:14] 2025-11-27 22:46:48,900 | INFO     | [job] queue monitor thread has finished
[2025-11-27 17:47:14] 2025-11-27 22:46:51,380 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 17:47:14] 2025-11-27 22:47:08,983 | INFO     | [monitor] cgroup control has ended
[2025-11-27 17:47:14] 2025-11-27 22:47:09,793 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139873525602112)>', '<ExcThread(monitor, started 139872614459136)>']
[2025-11-27 17:47:14] 2025-11-27 22:47:14,634 | INFO     | PID=3995 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-27 17:47:14] 2025-11-27 22:47:14,634 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 17:47:14] 2025-11-27 22:47:14,634 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 17:47:14] 2025-11-27 22:47:14,634 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 17:47:14] 2025-11-27 22:47:14,634 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 17:47:14] 2025-11-27 22:47:14,634 | INFO     | [monitor] control thread has ended
[2025-11-27 17:47:14] 2025-11-27 22:47:14,796 | INFO     | all workflow threads have been joined
[2025-11-27 17:47:14] 2025-11-27 22:47:14,796 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 17:47:14] 2025-11-27 22:47:14,796 | INFO     | traces error code: 0
[2025-11-27 17:47:14] 2025-11-27 22:47:14,797 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 17:47:14] 2025-11-27 22:47:14,877 [wrapper] ==== pilot stdout END ====
[2025-11-27 17:47:14] 2025-11-27 22:47:14,879 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 17:47:14] 2025-11-27 22:47:14,881 [wrapper] pilotpid: 3995
[2025-11-27 17:47:14] 2025-11-27 22:47:14,883 [wrapper] Pilot exit status: 0
[2025-11-27 17:47:14] 2025-11-27 22:47:14,890 [wrapper] pandaids: 6896989988 6896989988
[2025-11-27 17:47:14] 2025-11-27 22:47:14,906 [wrapper] cleanup supervisor_pilot 20503 3996
[2025-11-27 17:47:14] 2025-11-27 22:47:14,908 [wrapper] Test setup, not cleaning
[2025-11-27 17:47:14] 2025-11-27 22:47:14,910 [wrapper] apfmon messages muted
[2025-11-27 17:47:14] 2025-11-27 22:47:14,912 [wrapper] ==== wrapper stdout END ====
[2025-11-27 17:47:14] 2025-11-27 22:47:14,914 [wrapper] ==== wrapper stderr END ====
[2025-11-27 17:47:14]  *** Error codes and diagnostics ***
[2025-11-27 17:47:14]     "exeErrorCode": 0,
[2025-11-27 17:47:14]     "exeErrorDiag": "",
[2025-11-27 17:47:14]     "pilotErrorCode": 0,
[2025-11-27 17:47:14]     "pilotErrorDiag": "",
[2025-11-27 17:47:14]  *** Listing of results directory ***
[2025-11-27 17:47:15] total 1709884
[2025-11-27 17:47:15] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-27 17:47:15] -rw-r--r-- 1 boincer umatlas    576529 Nov 25 06:49 pilot3.tar.gz
[2025-11-27 17:47:15] -rw-r--r-- 1 boincer umatlas      5112 Nov 25 07:31 queuedata.json
[2025-11-27 17:47:15] -rwx------ 1 boincer umatlas     36292 Nov 25 07:32 runpilot2-wrapper.sh
[2025-11-27 17:47:15] -rw-r--r-- 1 boincer umatlas       100 Nov 27 04:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 17:47:15] -rwxr-xr-x 1 boincer umatlas      7986 Nov 27 04:04 run_atlas
[2025-11-27 17:47:15] -rw-r--r-- 1 boincer umatlas       105 Nov 27 04:04 job.xml
[2025-11-27 17:47:15] -rw-r--r-- 3 boincer umatlas 409256738 Nov 27 04:04 EVNT.47483658._002164.pool.root.1
[2025-11-27 17:47:15] -rw-r--r-- 3 boincer umatlas 409256738 Nov 27 04:04 ATLAS.root_0
[2025-11-27 17:47:15] -rw-r--r-- 2 boincer umatlas     15847 Nov 27 04:04 start_atlas.sh
[2025-11-27 17:47:15] drwxrwx--x 2 boincer umatlas      4096 Nov 27 04:04 shared
[2025-11-27 17:47:15] -rw-r--r-- 2 boincer umatlas    590110 Nov 27 04:04 input.tar.gz
[2025-11-27 17:47:15] -rw-r--r-- 1 boincer umatlas         0 Nov 27 04:04 boinc_lockfile
[2025-11-27 17:47:15] -rw-r--r-- 1 boincer umatlas      2784 Nov 27 08:48 pandaJob.out
[2025-11-27 17:47:15] -rw------- 1 boincer umatlas        57 Nov 27 08:48 setup.sh.local
[2025-11-27 17:47:15] -rw------- 1 boincer umatlas    991588 Nov 27 08:48 agis_schedconf.cvmfs.json
[2025-11-27 17:47:15] -rw-r--r-- 1 boincer umatlas       533 Nov 27 17:43 boinc_task_state.xml
[2025-11-27 17:47:15] -rw-r--r-- 1 boincer umatlas      6241 Nov 27 17:45 init_data.xml
[2025-11-27 17:47:15] -rw------- 1 boincer umatlas 916827457 Nov 27 17:46 HITS.47556161._001476.pool.root.1
[2025-11-27 17:47:15] -rw------- 1 boincer umatlas      1049 Nov 27 17:46 memory_monitor_summary.json
[2025-11-27 17:47:15] -rw------- 1 boincer umatlas        96 Nov 27 17:46 pilot_heartbeat.json
[2025-11-27 17:47:15] -rw------- 1 boincer umatlas   1516240 Nov 27 17:46 agis_ddmendpoints.agis.ALL.json
[2025-11-27 17:47:15] -rw------- 1 boincer umatlas   1346709 Nov 27 17:46 log.47556161._001476.job.log.tgz.1
[2025-11-27 17:47:15] -rw------- 1 boincer umatlas      8655 Nov 27 17:46 heartbeat.json
[2025-11-27 17:47:15] -rw-r--r-- 1 boincer umatlas        29 Nov 27 17:47 wrapper_checkpoint.txt
[2025-11-27 17:47:15] -rw-r--r-- 1 boincer umatlas      8192 Nov 27 17:47 boinc_mmap_file
[2025-11-27 17:47:15] -rw------- 1 boincer umatlas      4745 Nov 27 17:47 pilotlog.txt
[2025-11-27 17:47:15] -rw------- 1 boincer umatlas   4483182 Nov 27 17:47 log.47556161._001476.job.log.1
[2025-11-27 17:47:15] -rw------- 1 boincer umatlas       353 Nov 27 17:47 output.list
[2025-11-27 17:47:15] -rw-r--r-- 1 boincer umatlas       620 Nov 27 17:47 runtime_log
[2025-11-27 17:47:15] -rw------- 1 boincer umatlas   5847040 Nov 27 17:47 result.tar.gz
[2025-11-27 17:47:15] -rw------- 1 boincer umatlas       790 Nov 27 17:47 x0nNDmSO7h8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmKTJKDm1QAVcm.diag
[2025-11-27 17:47:15] -rw-r--r-- 1 boincer umatlas      9428 Nov 27 17:47 runtime_log.err
[2025-11-27 17:47:15] -rw-r--r-- 1 boincer umatlas     23350 Nov 27 17:47 stderr.txt
[2025-11-27 17:47:15] HITS file was successfully produced:
[2025-11-27 17:47:15] -rw------- 1 boincer umatlas 916827457 Nov 27 17:46 shared/HITS.pool.root.1
[2025-11-27 17:47:15]  *** Contents of shared directory: ***
[2025-11-27 17:47:15] total 1301320
[2025-11-27 17:47:15] -rw-r--r-- 3 boincer umatlas 409256738 Nov 27 04:04 ATLAS.root_0
[2025-11-27 17:47:15] -rw-r--r-- 2 boincer umatlas     15847 Nov 27 04:04 start_atlas.sh
[2025-11-27 17:47:15] -rw-r--r-- 2 boincer umatlas    590110 Nov 27 04:04 input.tar.gz
[2025-11-27 17:47:15] -rw------- 1 boincer umatlas 916827457 Nov 27 17:46 HITS.pool.root.1
[2025-11-27 17:47:15] -rw------- 1 boincer umatlas   5847040 Nov 27 17:47 result.tar.gz
17:47:16 (32273): run_atlas exited; CPU time 127330.311307
17:47:16 (32273): called boinc_finish(0)

</stderr_txt>
]]>

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