Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
14:49:48 (22522): wrapper (7.7.26015): starting
14:49:48 (22522): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 14:49:48] Arguments: --nthreads 8
[2025-11-27 14:49:48] Threads: 8
[2025-11-27 14:49:48] Checking for CVMFS
[2025-11-27 14:49:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 14:49:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 14:49:48] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 14:49:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 14:49:48] 2.11.0.0 4305 66831 72248 153366 0 182 3192155 4096001 518 130560 1 5232621 99.786 3370531 412 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-11-27 14:49:48] CVMFS is ok
[2025-11-27 14:49:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 14:49:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 14:49:48] Further information can be found at the LHC@home message board.
[2025-11-27 14:49:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 14:49:48] Checking for apptainer binary...
[2025-11-27 14:49:48] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-11-27 14:49:48] apptainer is not installed, using version from CVMFS
[2025-11-27 14:49:48] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 14:50:23] WARNING: Environment variable TMPDIR already has value [/tmp/job_10929527/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node053
[2025-11-27 14:50:23] apptainer works
[2025-11-27 14:50:23] Set ATHENA_PROC_NUMBER=8
[2025-11-27 14:50:23] Set ATHENA_CORE_NUMBER=8
[2025-11-27 14:50:23] Starting ATLAS job with PandaID=6892535067
[2025-11-27 14:50:23] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10929527/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 19:14:45]  *** The last 200 lines of the pilot log: ***
[2025-11-27 19:14:45] 2025-11-27 18:13:59,740 | INFO     | time since job start (15767s) is within the limit (172800.0s)
[2025-11-27 19:14:45] 2025-11-27 18:14:00,901 | INFO     | PID=31845 has CPU usage=7.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 19:14:45] 2025-11-27 18:14:00,901 | INFO     | .. there are 8 such processes running
[2025-11-27 19:14:45] 2025-11-27 18:14:01,004 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 19:14:45] 2025-11-27 18:14:01,021 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 3159.293609375
[2025-11-27 19:14:45] 2025-11-27 18:14:01,026 | INFO     | using path: /tmp/job_10929527/atlas/pilot/slots/0/PanDA_Pilot-6892535067/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 19:14:45] 2025-11-27 18:14:01,026 | INFO     | extracted standard info from prmon json
[2025-11-27 19:14:45] 2025-11-27 18:14:01,026 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 19:14:45] 2025-11-27 18:14:01,026 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 19:14:45] 2025-11-27 18:14:01,029 | INFO     | fitting pss+swap vs Time
[2025-11-27 19:14:45] 2025-11-27 18:14:01,029 | INFO     | sum of square deviations: 5325139844.5
[2025-11-27 19:14:45] 2025-11-27 18:14:01,030 | INFO     | sum of deviations: 956917892403.9998
[2025-11-27 19:14:45] 2025-11-27 18:14:01,030 | INFO     | mean x: 1764259381.5
[2025-11-27 19:14:45] 2025-11-27 18:14:01,030 | INFO     | mean y: 3681315.2093023257
[2025-11-27 19:14:45] 2025-11-27 18:14:01,030 | INFO     | intersect: -317030503381.8653
[2025-11-27 19:14:45] 2025-11-27 18:14:01,030 | INFO     | chi2: 5.980413306138454
[2025-11-27 19:14:45] 2025-11-27 18:14:01,030 | INFO     | sum of square deviations: 5021496942.0
[2025-11-27 19:14:45] 2025-11-27 18:14:01,031 | INFO     | sum of deviations: 1014245481770.9998
[2025-11-27 19:14:45] 2025-11-27 18:14:01,031 | INFO     | mean x: 1764259229.0
[2025-11-27 19:14:45] 2025-11-27 18:14:01,031 | INFO     | mean y: 3709727.7351778657
[2025-11-27 19:14:45] 2025-11-27 18:14:01,031 | INFO     | intersect: -356342609378.7233
[2025-11-27 19:14:45] 2025-11-27 18:14:01,031 | INFO     | chi2: 3.7882830499439826
[2025-11-27 19:14:45] 2025-11-27 18:14:01,031 | INFO     | current chi2=3.7882830499439826 (change=36.65516317984931 %)
[2025-11-27 19:14:45] 2025-11-27 18:14:01,032 | INFO     | sum of square deviations: 4729621702.0
[2025-11-27 19:14:45] 2025-11-27 18:14:01,032 | INFO     | sum of deviations: 960066013374.5
[2025-11-27 19:14:45] 2025-11-27 18:14:01,032 | INFO     | mean x: 1764259076.5
[2025-11-27 19:14:45] 2025-11-27 18:14:01,033 | INFO     | mean y: 3681416.2862903224
[2025-11-27 19:14:45] 2025-11-27 18:14:01,033 | INFO     | intersect: -358123307348.77246
[2025-11-27 19:14:45] 2025-11-27 18:14:01,033 | INFO     | chi2: 3.793944080418848
[2025-11-27 19:14:45] 2025-11-27 18:14:01,033 | INFO     | current chi2=3.793944080418848 (change=-0.1494352560310646 %)
[2025-11-27 19:14:45] 2025-11-27 18:14:01,033 | INFO     | right removable region: 247
[2025-11-27 19:14:45] 2025-11-27 18:14:01,033 | INFO     | sum of square deviations: 5021496942.0
[2025-11-27 19:14:45] 2025-11-27 18:14:01,034 | INFO     | sum of deviations: 832607575902.9999
[2025-11-27 19:14:45] 2025-11-27 18:14:01,034 | INFO     | mean x: 1764259534.0
[2025-11-27 19:14:45] 2025-11-27 18:14:01,034 | INFO     | mean y: 3743671.0750988144
[2025-11-27 19:14:45] 2025-11-27 18:14:01,034 | INFO     | intersect: -292525729279.7612
[2025-11-27 19:14:45] 2025-11-27 18:14:01,034 | INFO     | chi2: 2.804755994601203
[2025-11-27 19:14:45] 2025-11-27 18:14:01,034 | INFO     | current chi2=2.804755994601203 (change=53.10096725719061 %)
[2025-11-27 19:14:45] 2025-11-27 18:14:01,034 | INFO     | sum of square deviations: 4729621702.0
[2025-11-27 19:14:45] 2025-11-27 18:14:01,035 | INFO     | sum of deviations: 769272321626.0001
[2025-11-27 19:14:45] 2025-11-27 18:14:01,035 | INFO     | mean x: 1764259686.5
[2025-11-27 19:14:45] 2025-11-27 18:14:01,035 | INFO     | mean y: 3776673.806451613
[2025-11-27 19:14:45] 2025-11-27 18:14:01,035 | INFO     | intersect: -286952819540.03046
[2025-11-27 19:14:45] 2025-11-27 18:14:01,036 | INFO     | chi2: 2.552581743083372
[2025-11-27 19:14:45] 2025-11-27 18:14:01,036 | INFO     | current chi2=2.552581743083372 (change=8.990951512475021 %)
[2025-11-27 19:14:45] 2025-11-27 18:14:01,036 | INFO     | left removable region: 20
[2025-11-27 19:14:45] 2025-11-27 18:14:01,036 | INFO     | sum of square deviations: 3627000098.0
[2025-11-27 19:14:45] 2025-11-27 18:14:01,036 | INFO     | sum of deviations: 689642990433.9999
[2025-11-27 19:14:45] 2025-11-27 18:14:01,037 | INFO     | mean x: 1764259656.0
[2025-11-27 19:14:45] 2025-11-27 18:14:01,037 | INFO     | mean y: 3824097.700440529
[2025-11-27 19:14:45] 2025-11-27 18:14:01,037 | INFO     | intersect: -335455032310.05585
[2025-11-27 19:14:45] 2025-11-27 18:14:01,037 | INFO     | chi2: 0.2066740101794847
[2025-11-27 19:14:45] 2025-11-27 18:14:01,037 | INFO     | current memory leak: 190.14 B/s (using 227 data points, chi2=0.21)
[2025-11-27 19:14:45] 2025-11-27 18:14:01,037 | INFO     | could have reported an average CPU frequency of 2742 MHz (12 samples)
[2025-11-27 19:14:45] 2025-11-27 18:14:01,037 | INFO     | ..............................
[2025-11-27 19:14:45] 2025-11-27 18:14:01,037 | INFO     | . Timing measurements:
[2025-11-27 19:14:45] 2025-11-27 18:14:01,037 | INFO     | . get job = 0 s
[2025-11-27 19:14:45] 2025-11-27 18:14:01,037 | INFO     | . initial setup = 6 s
[2025-11-27 19:14:45] 2025-11-27 18:14:01,037 | INFO     | . payload setup = 53 s
[2025-11-27 19:14:45] 2025-11-27 18:14:01,037 | INFO     | . stage-in = 0 s
[2025-11-27 19:14:45] 2025-11-27 18:14:01,037 | INFO     | . payload execution = 15688 s
[2025-11-27 19:14:45] 2025-11-27 18:14:01,037 | INFO     | . stage-out = 1 s
[2025-11-27 19:14:45] 2025-11-27 18:14:01,037 | INFO     | . log creation = 0 s
[2025-11-27 19:14:45] 2025-11-27 18:14:01,037 | INFO     | ..............................
[2025-11-27 19:14:45] 2025-11-27 18:14:01,085 | INFO     | 
[2025-11-27 19:14:45] 2025-11-27 18:14:01,085 | INFO     | job summary report
[2025-11-27 19:14:45] 2025-11-27 18:14:01,085 | INFO     | --------------------------------------------------
[2025-11-27 19:14:45] 2025-11-27 18:14:01,085 | INFO     | PanDA job id: 6892535067
[2025-11-27 19:14:45] 2025-11-27 18:14:01,085 | INFO     | task id: 47493029
[2025-11-27 19:14:45] 2025-11-27 18:14:01,085 | INFO     | errors: (none)
[2025-11-27 19:14:45] 2025-11-27 18:14:01,085 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 19:14:45] 2025-11-27 18:14:01,085 | INFO     | pilot state: finished 
[2025-11-27 19:14:45] 2025-11-27 18:14:01,085 | INFO     | transexitcode: 0
[2025-11-27 19:14:45] 2025-11-27 18:14:01,085 | INFO     | exeerrorcode: 0
[2025-11-27 19:14:45] 2025-11-27 18:14:01,085 | INFO     | exeerrordiag: 
[2025-11-27 19:14:45] 2025-11-27 18:14:01,085 | INFO     | exitcode: 0
[2025-11-27 19:14:45] 2025-11-27 18:14:01,085 | INFO     | exitmsg: OK
[2025-11-27 19:14:45] 2025-11-27 18:14:01,086 | INFO     | cpuconsumptiontime: 117835 s
[2025-11-27 19:14:45] 2025-11-27 18:14:01,086 | INFO     | nevents: 1000
[2025-11-27 19:14:45] 2025-11-27 18:14:01,086 | INFO     | neventsw: 0
[2025-11-27 19:14:45] 2025-11-27 18:14:01,086 | INFO     | pid: 18169
[2025-11-27 19:14:45] 2025-11-27 18:14:01,086 | INFO     | pgrp: 18169
[2025-11-27 19:14:45] 2025-11-27 18:14:01,086 | INFO     | corecount: 8
[2025-11-27 19:14:45] 2025-11-27 18:14:01,086 | INFO     | event service: False
[2025-11-27 19:14:45] 2025-11-27 18:14:01,086 | INFO     | sizes: {0: 2284430, 1: 2284430, 3: 2284720, 11: 2284748, 15746: 2316834, 15747: 2325858, 15749: 2326042, 15755: 2326288}
[2025-11-27 19:14:45] 2025-11-27 18:14:01,086 | INFO     | --------------------------------------------------
[2025-11-27 19:14:45] 2025-11-27 18:14:01,086 | INFO     | 
[2025-11-27 19:14:45] 2025-11-27 18:14:01,086 | INFO     | executing command: ls -lF /tmp/job_10929527/atlas/pilot/slots/0
[2025-11-27 19:14:45] 2025-11-27 18:14:01,095 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 19:14:45] 2025-11-27 18:14:01,095 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 19:14:45] 2025-11-27 18:14:01,095 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 19:14:45] 2025-11-27 18:14:01,095 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 19:14:45] 2025-11-27 18:14:01,095 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 19:14:45] 2025-11-27 18:14:01,095 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 19:14:45] 2025-11-27 18:14:01,096 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 19:14:45] 2025-11-27 18:14:01,096 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 19:14:45] 2025-11-27 18:14:01,096 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 19:14:45] 2025-11-27 18:14:01,096 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 19:14:45] 2025-11-27 18:14:01,096 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 19:14:45] 2025-11-27 18:14:01,096 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 19:14:45] 2025-11-27 18:14:01,096 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 19:14:45] 2025-11-27 18:14:01,096 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 19:14:45] 2025-11-27 18:14:01,096 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 19:14:45] 2025-11-27 18:14:01,096 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 19:14:45] 2025-11-27 18:14:01,096 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 19:14:45] 2025-11-27 18:14:01,096 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 19:14:45] 2025-11-27 18:14:01,096 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 19:14:45] 2025-11-27 18:14:01,096 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 19:14:45] 2025-11-27 18:14:01,096 | INFO     | job 6892535067 has completed (purged errors)
[2025-11-27 19:14:45] 2025-11-27 18:14:01,096 | INFO     | overall cleanup function is called
[2025-11-27 19:14:45] 2025-11-27 18:14:02,103 | INFO     | --- collectZombieJob: --- 10, [18169]
[2025-11-27 19:14:45] 2025-11-27 18:14:02,103 | INFO     | zombie collector waiting for pid 18169
[2025-11-27 19:14:45] 2025-11-27 18:14:02,103 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 19:14:45] 2025-11-27 18:14:02,104 | INFO     | collected zombie processes
[2025-11-27 19:14:45] 2025-11-27 18:14:02,104 | INFO     | will attempt to kill all subprocesses of pid=18169
[2025-11-27 19:14:45] 2025-11-27 18:14:02,228 | INFO     | process IDs to be killed: [18169] (in reverse order)
[2025-11-27 19:14:45] 2025-11-27 18:14:02,272 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 19:14:45] 2025-11-27 18:14:02,272 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 19:14:45] 2025-11-27 18:14:02,277 | INFO     | did not find any defunct processes belonging to 18169
[2025-11-27 19:14:45] 2025-11-27 18:14:02,281 | INFO     | did not find any defunct processes belonging to 18169
[2025-11-27 19:14:45] 2025-11-27 18:14:02,281 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 19:14:45] 2025-11-27 18:14:02,282 | INFO     | ready for new job
[2025-11-27 19:14:45] 2025-11-27 18:14:02,282 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 19:14:45] 2025-11-27 18:14:02,282 | INFO     | ***************************************
[2025-11-27 19:14:45] 2025-11-27 18:14:02,282 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 19:14:45] 2025-11-27 18:14:02,283 | INFO     | ***************************************
[2025-11-27 19:14:45] 2025-11-27 18:14:02,283 | INFO     | 
[2025-11-27 19:14:45] 2025-11-27 18:14:02,297 | INFO     | architecture information:
[2025-11-27 19:14:45] 2025-11-27 18:14:02,298 | INFO     | executing command: cat /etc/os-release
[2025-11-27 19:14:45] 2025-11-27 18:14:02,304 | INFO     | cat /etc/os-release:
[2025-11-27 19:14:45] NAME="CentOS Linux"
[2025-11-27 19:14:45] VERSION="7 (Core)"
[2025-11-27 19:14:45] ID="centos"
[2025-11-27 19:14:45] ID_LIKE="rhel fedora"
[2025-11-27 19:14:45] VERSION_ID="7"
[2025-11-27 19:14:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 19:14:45] ANSI_COLOR="0;31"
[2025-11-27 19:14:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 19:14:45] HOME_URL="https://www.centos.org/"
[2025-11-27 19:14:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 19:14:45] 
[2025-11-27 19:14:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 19:14:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 19:14:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 19:14:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 19:14:45] 
[2025-11-27 19:14:45] 2025-11-27 18:14:02,304 | INFO     | ***************************************
[2025-11-27 19:14:45] 2025-11-27 18:14:02,806 | INFO     | executing command: df -mP /tmp/job_10929527/atlas/pilot/slots/0
[2025-11-27 19:14:45] 2025-11-27 18:14:02,811 | INFO     | sufficient remaining disk space (219012923392 B)
[2025-11-27 19:14:45] 2025-11-27 18:14:02,812 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 19:14:45] 2025-11-27 18:14:02,812 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 19:14:45] 2025-11-27 18:14:02,812 | INFO     | update_server=False
[2025-11-27 19:14:45] 2025-11-27 18:14:02,812 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 19:14:45] 2025-11-27 18:14:02,812 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 19:14:45] 2025-11-27 18:14:02,812 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 19:14:45] 2025-11-27 18:14:02,812 | INFO     | aborting loop
[2025-11-27 19:14:45] 2025-11-27 18:14:02,815 | INFO     | all job control threads have been joined
[2025-11-27 19:14:45] 2025-11-27 18:14:03,817 | INFO     | [job] retrieve thread has finished
[2025-11-27 19:14:45] 2025-11-27 18:14:03,817 | INFO     | [job] queue monitor thread has finished
[2025-11-27 19:14:45] 2025-11-27 18:14:03,817 | INFO     | [job] control thread has finished
[2025-11-27 19:14:45] 2025-11-27 18:14:03,818 | INFO     | [job] job monitor thread has finished
[2025-11-27 19:14:45] 2025-11-27 18:14:03,866 | INFO     | all data control threads have been joined
[2025-11-27 19:14:45] 2025-11-27 18:14:03,929 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 19:14:45] 2025-11-27 18:14:04,172 | INFO     | all payload control threads have been joined
[2025-11-27 19:14:45] 2025-11-27 18:14:04,274 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 19:14:45] 2025-11-27 18:14:04,379 | INFO     | [payload] failed_post thread has finished
[2025-11-27 19:14:45] 2025-11-27 18:14:04,452 | INFO     | [payload] validate_post thread has finished
[2025-11-27 19:14:45] 2025-11-27 18:14:04,726 | INFO     | [data] copytool_in thread has finished
[2025-11-27 19:14:45] 2025-11-27 18:14:04,815 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 19:14:45] 2025-11-27 18:14:04,871 | INFO     | [data] control thread has finished
[2025-11-27 19:14:45] 2025-11-27 18:14:04,937 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 19:14:45] 2025-11-27 18:14:05,136 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 19:14:45] 2025-11-27 18:14:05,177 | INFO     | [payload] control thread has finished
[2025-11-27 19:14:45] 2025-11-27 18:14:05,250 | INFO     | [job] validate thread has finished
[2025-11-27 19:14:45] 2025-11-27 18:14:05,739 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 19:14:45] 2025-11-27 18:14:05,935 | INFO     | [data] copytool_out thread has finished
[2025-11-27 19:14:45] 2025-11-27 18:14:09,745 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 19:14:45] 2025-11-27 18:14:33,108 | INFO     | PID=31845 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 19:14:45] 2025-11-27 18:14:33,108 | INFO     | .. there are 8 such processes running
[2025-11-27 19:14:45] 2025-11-27 18:14:33,108 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 19:14:45] 2025-11-27 18:14:33,108 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 19:14:45] 2025-11-27 18:14:33,109 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 19:14:45] 2025-11-27 18:14:38,382 | INFO     | [monitor] cgroup control has ended
[2025-11-27 19:14:45] 2025-11-27 18:14:40,482 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456060819200)>']
[2025-11-27 19:14:45] 2025-11-27 18:14:41,143 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 19:14:45] 2025-11-27 18:14:41,143 | INFO     | [monitor] control thread has ended
[2025-11-27 19:14:45] 2025-11-27 18:14:45,487 | INFO     | all workflow threads have been joined
[2025-11-27 19:14:45] 2025-11-27 18:14:45,487 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 19:14:45] 2025-11-27 18:14:45,487 | INFO     | traces error code: 0
[2025-11-27 19:14:45] 2025-11-27 18:14:45,487 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 19:14:45] 2025-11-27 18:14:45,544 [wrapper] ==== pilot stdout END ====
[2025-11-27 19:14:45] 2025-11-27 18:14:45,545 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 19:14:45] 2025-11-27 18:14:45,546 [wrapper] pilotpid: 31845
[2025-11-27 19:14:45] 2025-11-27 18:14:45,547 [wrapper] Pilot exit status: 0
[2025-11-27 19:14:45] 2025-11-27 18:14:45,551 [wrapper] pandaids: 6892535067
[2025-11-27 19:14:45] 2025-11-27 18:14:45,581 [wrapper] cleanup supervisor_pilot 23070 31846
[2025-11-27 19:14:45] 2025-11-27 18:14:45,582 [wrapper] Test setup, not cleaning
[2025-11-27 19:14:45] 2025-11-27 18:14:45,584 [wrapper] apfmon messages muted
[2025-11-27 19:14:45] 2025-11-27 18:14:45,585 [wrapper] ==== wrapper stdout END ====
[2025-11-27 19:14:45] 2025-11-27 18:14:45,587 [wrapper] ==== wrapper stderr END ====
[2025-11-27 19:14:45]  *** Error codes and diagnostics ***
[2025-11-27 19:14:45]     "exeErrorCode": 0,
[2025-11-27 19:14:45]     "exeErrorDiag": "",
[2025-11-27 19:14:45]     "pilotErrorCode": 0,
[2025-11-27 19:14:45]     "pilotErrorDiag": "",
[2025-11-27 19:14:45]  *** Listing of results directory ***
[2025-11-27 19:14:45] total 1291876
[2025-11-27 19:14:45] -rw------- 1 mf493845 unix-user      5112 Nov 19 08:27 queuedata.json
[2025-11-27 19:14:45] -rw------- 1 mf493845 unix-user    576529 Nov 19 08:27 pilot3.tar.gz
[2025-11-27 19:14:45] -rwx------ 1 mf493845 unix-user     36292 Nov 19 08:27 runpilot2-wrapper.sh
[2025-11-27 19:14:45] -rw------- 1 mf493845 unix-user       100 Nov 27 13:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 19:14:45] -rwxr-xr-x 1 mf493845 unix-user      7986 Nov 27 13:05 run_atlas
[2025-11-27 19:14:45] -rw------- 1 mf493845 unix-user       105 Nov 27 13:05 job.xml
[2025-11-27 19:14:45] -rw-r--r-- 2 mf493845 unix-user 408519214 Nov 27 14:49 EVNT.47493027._000194.pool.root.1
[2025-11-27 19:14:45] -rw-r--r-- 2 mf493845 unix-user     15120 Nov 27 14:49 start_atlas.sh
[2025-11-27 19:14:45] drwxrwx--x 2 mf493845 unix-user       100 Nov 27 14:49 shared
[2025-11-27 19:14:45] -rw-r--r-- 2 mf493845 unix-user    590095 Nov 27 14:49 input.tar.gz
[2025-11-27 19:14:45] -rw------- 1 mf493845 unix-user      6389 Nov 27 14:49 init_data.xml
[2025-11-27 19:14:45] -rw------- 1 mf493845 unix-user         0 Nov 27 14:49 boinc_setup_complete
[2025-11-27 19:14:45] -rw------- 1 mf493845 unix-user      8192 Nov 27 14:49 boinc_mmap_file
[2025-11-27 19:14:45] -rw------- 1 mf493845 unix-user         0 Nov 27 14:49 boinc_lockfile
[2025-11-27 19:14:45] -rw------- 1 mf493845 unix-user      2773 Nov 27 14:50 pandaJob.out
[2025-11-27 19:14:45] -rw------- 1 mf493845 unix-user    991588 Nov 27 14:51 agis_schedconf.cvmfs.json
[2025-11-27 19:14:45] drwx------ 5 mf493845 unix-user       440 Nov 27 14:51 pilot3
[2025-11-27 19:14:45] -rw------- 1 mf493845 unix-user 902824137 Nov 27 19:13 HITS.47493029._001897.pool.root.1
[2025-11-27 19:14:45] -rw------- 1 mf493845 unix-user      1030 Nov 27 19:13 memory_monitor_summary.json
[2025-11-27 19:14:45] -rw------- 1 mf493845 unix-user   1516240 Nov 27 19:13 agis_ddmendpoints.agis.ALL.json
[2025-11-27 19:14:45] -rw------- 1 mf493845 unix-user   1560427 Nov 27 19:13 log.47493029._001897.job.log.tgz.1
[2025-11-27 19:14:45] -rw------- 1 mf493845 unix-user      8586 Nov 27 19:14 heartbeat.json
[2025-11-27 19:14:45] -rw------- 1 mf493845 unix-user        95 Nov 27 19:14 pilot_heartbeat.json
[2025-11-27 19:14:45] -rw------- 1 mf493845 unix-user      4835 Nov 27 19:14 pilotlog.txt
[2025-11-27 19:14:45] -rw------- 1 mf493845 unix-user   2262578 Nov 27 19:14 log.47493029._001897.job.log.1
[2025-11-27 19:14:45] -rw------- 1 mf493845 unix-user       353 Nov 27 19:14 output.list
[2025-11-27 19:14:45] -rw------- 1 mf493845 unix-user       620 Nov 27 19:14 runtime_log
[2025-11-27 19:14:45] -rw------- 1 mf493845 unix-user   3840000 Nov 27 19:14 result.tar.gz
[2025-11-27 19:14:45] -rw------- 1 mf493845 unix-user      9077 Nov 27 19:14 runtime_log.err
[2025-11-27 19:14:45] -rw------- 1 mf493845 unix-user       651 Nov 27 19:14 4EKODmhmrf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmpqGKDmgrRn9n.diag
[2025-11-27 19:14:45] -rw------- 1 mf493845 unix-user     21784 Nov 27 19:14 stderr.txt
[2025-11-27 19:14:45] HITS file was successfully produced:
[2025-11-27 19:14:45] -rw------- 1 mf493845 unix-user 902824137 Nov 27 19:13 shared/HITS.pool.root.1
[2025-11-27 19:14:45]  *** Contents of shared directory: ***
[2025-11-27 19:14:45] total 1284964
[2025-11-27 19:14:45] -rw-r--r-- 2 mf493845 unix-user 408519214 Nov 27 14:49 ATLAS.root_0
[2025-11-27 19:14:45] -rw-r--r-- 2 mf493845 unix-user     15120 Nov 27 14:49 start_atlas.sh
[2025-11-27 19:14:45] -rw-r--r-- 2 mf493845 unix-user    590095 Nov 27 14:49 input.tar.gz
[2025-11-27 19:14:45] -rw------- 1 mf493845 unix-user 902824137 Nov 27 19:13 HITS.pool.root.1
[2025-11-27 19:14:45] -rw------- 1 mf493845 unix-user   3840000 Nov 27 19:14 result.tar.gz
19:14:47 (22522): run_atlas exited; CPU time 118001.180073
19:14:47 (22522): called boinc_finish(0)

</stderr_txt>
]]>

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