Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:46:17 (3565336): wrapper (7.7.26015): starting
09:46:17 (3565336): wrapper: running run_atlas (--nthreads 3)
[2025-11-27 09:46:17] Arguments: --nthreads 3
[2025-11-27 09:46:17] Threads: 3
[2025-11-27 09:46:17] Checking for CVMFS
[2025-11-27 09:46:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 09:46:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 09:46:17] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 09:46:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 09:46:17] 2.9.2.0 3252557 67 61636 153357 2 16 35950574 36864001 0 130560 0 939064 99.999 5248 22620 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-27 09:46:17] CVMFS is ok
[2025-11-27 09:46:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 09:46:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 09:46:17] Further information can be found at the LHC@home message board.
[2025-11-27 09:46:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 09:46:17] Checking for apptainer binary...
[2025-11-27 09:46:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 09:46:17] Running /usr/bin/apptainer --version
[2025-11-27 09:46:17] apptainer version 1.4.1-1.1
[2025-11-27 09:46:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 09:46:17] thA335
[2025-11-27 09:46:17] apptainer works
[2025-11-27 09:46:18] Set ATHENA_PROC_NUMBER=3
[2025-11-27 09:46:18] Set ATHENA_CORE_NUMBER=3
[2025-11-27 09:46:18] Starting ATLAS job with PandaID=6896254965
[2025-11-27 09:46:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 09:50:34]  *** The last 200 lines of the pilot log: ***
[2025-11-27 09:50:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 09:50:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 09:50:34] 
[2025-11-27 09:50:34] 2025-11-27 08:49:41,412 | INFO     | ***************************************
[2025-11-27 09:50:34] 2025-11-27 08:49:41,915 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-27 09:50:34] 2025-11-27 08:49:41,929 | INFO     | sufficient remaining disk space (826875576320 B)
[2025-11-27 09:50:34] 2025-11-27 08:49:41,929 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 09:50:34] 2025-11-27 08:49:41,929 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 09:50:34] 2025-11-27 08:49:41,929 | INFO     | update_server=False
[2025-11-27 09:50:34] 2025-11-27 08:49:41,929 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 09:50:34] 2025-11-27 08:49:41,930 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 09:50:34] 2025-11-27 08:49:41,930 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 09:50:34] 2025-11-27 08:49:41,930 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 09:50:34] 2025-11-27 08:49:42,013 | INFO     | all data control threads have been joined
[2025-11-27 09:50:34] 2025-11-27 08:49:42,443 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 09:50:34] 2025-11-27 08:49:42,443 | INFO     | aborting loop
[2025-11-27 09:50:34] 2025-11-27 08:49:42,935 | INFO     | [job] retrieve thread has finished
[2025-11-27 09:50:34] 2025-11-27 08:49:42,936 | INFO     | [job] queue monitor thread has finished
[2025-11-27 09:50:34] 2025-11-27 08:49:43,019 | INFO     | [data] control thread has finished
[2025-11-27 09:50:34] 2025-11-27 08:49:43,027 | INFO     | all payload control threads have been joined
[2025-11-27 09:50:34] 2025-11-27 08:49:43,268 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 09:50:34] 2025-11-27 08:49:43,376 | INFO     | all job control threads have been joined
[2025-11-27 09:50:34] 2025-11-27 08:49:43,449 | INFO     | [job] job monitor thread has finished
[2025-11-27 09:50:34] 2025-11-27 08:49:43,544 | INFO     | [payload] validate_post thread has finished
[2025-11-27 09:50:34] 2025-11-27 08:49:43,657 | INFO     | [data] copytool_in thread has finished
[2025-11-27 09:50:34] 2025-11-27 08:49:43,935 | INFO     | [data] copytool_out thread has finished
[2025-11-27 09:50:34] 2025-11-27 08:49:43,989 | INFO     | [job] validate thread has finished
[2025-11-27 09:50:34] 2025-11-27 08:49:44,033 | INFO     | [payload] control thread has finished
[2025-11-27 09:50:34] 2025-11-27 08:49:44,071 | INFO     | [payload] failed_post thread has finished
[2025-11-27 09:50:34] 2025-11-27 08:49:44,071 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 09:50:34] 2025-11-27 08:49:44,119 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 09:50:34] 2025-11-27 08:49:44,296 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 09:50:34] 2025-11-27 08:49:44,382 | INFO     | [job] control thread has finished
[2025-11-27 09:50:34] 2025-11-27 08:49:45,936 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 09:50:34] 2025-11-27 08:50:11,633 | INFO     | PID=3569065 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 09:50:34] 2025-11-27 08:50:11,633 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 09:50:34] 2025-11-27 08:50:11,633 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 09:50:34] 2025-11-27 08:50:11,633 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 09:50:34] 2025-11-27 08:50:28,828 | INFO     | [monitor] cgroup control has ended
[2025-11-27 09:50:34] 2025-11-27 08:50:29,834 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139951985723200)>', '<ExcThread(monitor, started 139951366727424)>']
[2025-11-27 09:50:34] 2025-11-27 08:50:30,731 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 09:50:34] 2025-11-27 08:50:30,732 | INFO     | [monitor] control thread has ended
[2025-11-27 09:50:34] 2025-11-27 08:50:34,860 | INFO     | all workflow threads have been joined
[2025-11-27 09:50:34] 2025-11-27 08:50:34,861 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 09:50:34] 2025-11-27 08:50:34,861 | INFO     | traces error code: 0
[2025-11-27 09:50:34] 2025-11-27 08:50:34,862 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 09:50:34] 2025-11-27 08:50:34,909 [wrapper] ==== pilot stdout END ====
[2025-11-27 09:50:34] 2025-11-27 08:50:34,912 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 09:50:34] 2025-11-27 08:50:34,915 [wrapper] pilotpid: 3569065
[2025-11-27 09:50:34] 2025-11-27 08:50:34,918 [wrapper] Pilot exit status: 0
[2025-11-27 09:50:34] 2025-11-27 08:50:34,925 [wrapper] pandaids: 6896254965
[2025-11-27 09:50:34] 2025-11-27 08:50:34,941 [wrapper] cleanup supervisor_pilot 3569071 3569066
[2025-11-27 09:50:34] 2025-11-27 08:50:34,944 [wrapper] Test setup, not cleaning
[2025-11-27 09:50:34] 2025-11-27 08:50:34,947 [wrapper] apfmon messages muted
[2025-11-27 09:50:34] 2025-11-27 08:50:34,950 [wrapper] ==== wrapper stdout END ====
[2025-11-27 09:50:34] 2025-11-27 08:50:34,953 [wrapper] ==== wrapper stderr END ====
[2025-11-27 09:50:34]  *** Error codes and diagnostics ***
[2025-11-27 09:50:34]     "exeErrorCode": 65,
[2025-11-27 09:50:34]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-27 09:50:34]     "pilotErrorCode": 1305,
[2025-11-27 09:50:34]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-27 09:50:34]  *** Listing of results directory ***
[2025-11-27 09:50:34] total 406392
[2025-11-27 09:50:34] -rw-r--r-- 1 boinc boinc    576529 Nov 24 23:04 pilot3.tar.gz
[2025-11-27 09:50:34] -rwx------ 1 boinc boinc     36292 Nov 24 23:41 runpilot2-wrapper.sh
[2025-11-27 09:50:34] -rw-r--r-- 1 boinc boinc      5112 Nov 24 23:41 queuedata.json
[2025-11-27 09:50:34] -rw-r--r-- 1 boinc boinc       100 Nov 27 09:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 09:50:34] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 09:46 run_atlas
[2025-11-27 09:50:34] -rw-r--r-- 1 boinc boinc       105 Nov 27 09:46 job.xml
[2025-11-27 09:50:34] -rw-r--r-- 2 boinc boinc 411954161 Nov 27 09:46 EVNT.47483658._001435.pool.root.1
[2025-11-27 09:50:34] -rw-r--r-- 2 boinc boinc    590102 Nov 27 09:46 input.tar.gz
[2025-11-27 09:50:34] -rw-r--r-- 2 boinc boinc     15847 Nov 27 09:46 start_atlas.sh
[2025-11-27 09:50:34] drwxrwx--x 2 boinc boinc      4096 Nov 27 09:46 shared
[2025-11-27 09:50:34] -rw-r--r-- 1 boinc boinc         0 Nov 27 09:46 boinc_setup_complete
[2025-11-27 09:50:34] -rw-r--r-- 1 boinc boinc      6196 Nov 27 09:46 init_data.xml
[2025-11-27 09:50:34] -rw-r--r-- 1 boinc boinc         0 Nov 27 09:46 boinc_lockfile
[2025-11-27 09:50:34] -rw-r--r-- 1 boinc boinc      2785 Nov 27 09:46 pandaJob.out
[2025-11-27 09:50:34] -rw------- 1 boinc boinc    991573 Nov 27 09:46 agis_schedconf.cvmfs.json
[2025-11-27 09:50:34] -rw------- 1 boinc boinc   1516240 Nov 27 09:46 agis_ddmendpoints.agis.ALL.json
[2025-11-27 09:50:34] drwx------ 5 boinc boinc      4096 Nov 27 09:46 pilot3
[2025-11-27 09:50:34] -rw-r--r-- 1 boinc boinc       522 Nov 27 09:47 boinc_task_state.xml
[2025-11-27 09:50:34] -rw------- 1 boinc boinc       954 Nov 27 09:47 memory_monitor_summary.json
[2025-11-27 09:50:34] -rw------- 1 boinc boinc     56117 Nov 27 09:47 log.47556149._004215.job.log.tgz.1
[2025-11-27 09:50:34] -rw------- 1 boinc boinc        95 Nov 27 09:49 pilot_heartbeat.json
[2025-11-27 09:50:34] -rw------- 1 boinc boinc      8403 Nov 27 09:49 heartbeat.json
[2025-11-27 09:50:34] -rw-r--r-- 1 boinc boinc      8192 Nov 27 09:50 boinc_mmap_file
[2025-11-27 09:50:34] -rw-r--r-- 1 boinc boinc        22 Nov 27 09:50 wrapper_checkpoint.txt
[2025-11-27 09:50:34] -rw------- 1 boinc boinc      4752 Nov 27 09:50 pilotlog.txt
[2025-11-27 09:50:34] -rw------- 1 boinc boinc     93162 Nov 27 09:50 log.47556149._004215.job.log.1
[2025-11-27 09:50:34] -rw------- 1 boinc boinc       186 Nov 27 09:50 output.list
[2025-11-27 09:50:34] -rw-r--r-- 1 boinc boinc       620 Nov 27 09:50 runtime_log
[2025-11-27 09:50:34] -rw------- 1 boinc boinc    163840 Nov 27 09:50 result.tar.gz
[2025-11-27 09:50:34] -rw------- 1 boinc boinc       649 Nov 27 09:50 wDPNDmtQuh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm3xLKDm3l0XMo.diag
[2025-11-27 09:50:34] -rw-r--r-- 1 boinc boinc      8744 Nov 27 09:50 runtime_log.err
[2025-11-27 09:50:34] -rw-r--r-- 1 boinc boinc      8468 Nov 27 09:50 stderr.txt
[2025-11-27 09:50:35] No HITS result produced
[2025-11-27 09:50:35]  *** Contents of shared directory: ***
[2025-11-27 09:50:35] total 403060
[2025-11-27 09:50:35] -rw-r--r-- 2 boinc boinc 411954161 Nov 27 09:46 ATLAS.root_0
[2025-11-27 09:50:35] -rw-r--r-- 2 boinc boinc    590102 Nov 27 09:46 input.tar.gz
[2025-11-27 09:50:35] -rw-r--r-- 2 boinc boinc     15847 Nov 27 09:46 start_atlas.sh
[2025-11-27 09:50:35] -rw------- 1 boinc boinc    163840 Nov 27 09:50 result.tar.gz
09:50:36 (3565336): run_atlas exited; CPU time 31.302577
09:50:36 (3565336): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN