Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
04:03:12 (529113): wrapper (7.7.26015): starting
04:03:12 (529113): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 04:03:12] Arguments: --nthreads 8
[2025-11-27 04:03:12] Threads: 8
[2025-11-27 04:03:12] Checking for CVMFS
[2025-11-27 04:03:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 04:03:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 04:03:13] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 04:03:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 04:03:15] 2.13.3.0 12977 31283 379596 153357 0 748 18247374 32935937 48441 16776704 0 171008511 99.569 189088418 32894 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 04:03:15] CVMFS is ok
[2025-11-27 04:03:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 04:03:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 04:03:15] Further information can be found at the LHC@home message board.
[2025-11-27 04:03:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 04:03:15] Checking for apptainer binary...
[2025-11-27 04:03:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 04:03:15] Running /usr/bin/apptainer --version
[2025-11-27 04:03:15] apptainer version 1.4.4-1.el9
[2025-11-27 04:03:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 04:03:15] c6-12-29-1.aglt2.org
[2025-11-27 04:03:15] apptainer works
[2025-11-27 04:03:16] Set ATHENA_PROC_NUMBER=8
[2025-11-27 04:03:16] Set ATHENA_CORE_NUMBER=8
[2025-11-27 04:03:16] Starting ATLAS job with PandaID=6891583684
[2025-11-27 04:03:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 00:00:36]  *** The last 200 lines of the pilot log: ***
[2025-11-28 00:00:36] 2025-11-28 04:59:14,900 | INFO     | 71702s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-28 00:00:36] 2025-11-28 04:59:15,963 | INFO     | monitor loop #3854: job 0:6891583684 is in state 'finished'
[2025-11-28 00:00:36] 2025-11-28 04:59:15,964 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:00:36] 2025-11-28 04:59:18,494 | INFO     | monitor loop #3855: job 0:6891583684 is in state 'finished'
[2025-11-28 00:00:36] 2025-11-28 04:59:18,495 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:00:36] 2025-11-28 04:59:19,439 | INFO     | PID=533715 has CPU usage=13.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 00:00:36] 2025-11-28 04:59:19,440 | INFO     | .. there are 67 such processes running
[2025-11-28 00:00:36] 2025-11-28 04:59:20,441 | INFO     | time since job start (71702s) is within the limit (172800.0s)
[2025-11-28 00:00:36] 2025-11-28 04:59:21,000 | INFO     | monitor loop #3856: job 0:6891583684 is in state 'finished'
[2025-11-28 00:00:36] 2025-11-28 04:59:21,001 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:00:36] 2025-11-28 04:59:22,448 | INFO     | time since job start (71704s) is within the limit (172800.0s)
[2025-11-28 00:00:36] 2025-11-28 04:59:23,505 | INFO     | monitor loop #3857: job 0:6891583684 is in state 'finished'
[2025-11-28 00:00:36] 2025-11-28 04:59:23,506 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:00:36] 2025-11-28 04:59:24,455 | INFO     | time since job start (71706s) is within the limit (172800.0s)
[2025-11-28 00:00:36] 2025-11-28 04:59:26,029 | INFO     | monitor loop #3858: job 0:6891583684 is in state 'finished'
[2025-11-28 00:00:36] 2025-11-28 04:59:26,030 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:00:36] 2025-11-28 04:59:26,474 | INFO     | time since job start (71708s) is within the limit (172800.0s)
[2025-11-28 00:00:36] 2025-11-28 04:59:27,324 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-28 00:00:36] 2025-11-28 04:59:27,331 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2621.210729166667
[2025-11-28 00:00:36] 2025-11-28 04:59:27,368 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6891583684/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 00:00:36] 2025-11-28 04:59:27,369 | INFO     | extracted standard info from prmon json
[2025-11-28 00:00:36] 2025-11-28 04:59:27,369 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 00:00:36] 2025-11-28 04:59:27,369 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 00:00:36] 2025-11-28 04:59:27,398 | INFO     | fitting pss+swap vs Time
[2025-11-28 00:00:36] 2025-11-28 04:59:27,400 | INFO     | sum of square deviations: 500448288767.31165
[2025-11-28 00:00:36] 2025-11-28 04:59:27,433 | INFO     | sum of deviations: 1927579714090.766
[2025-11-28 00:00:36] 2025-11-28 04:59:27,433 | INFO     | mean x: 1764270137.2489343
[2025-11-28 00:00:36] 2025-11-28 04:59:27,434 | INFO     | mean y: 2856260.610400682
[2025-11-28 00:00:36] 2025-11-28 04:59:27,434 | INFO     | intersect: -6792593745.051222
[2025-11-28 00:00:36] 2025-11-28 04:59:27,435 | INFO     | chi2: 15.003579829306533
[2025-11-28 00:00:36] 2025-11-28 04:59:27,437 | INFO     | sum of square deviations: 494076903679.3076
[2025-11-28 00:00:36] 2025-11-28 04:59:27,470 | INFO     | sum of deviations: 2303476946373.8276
[2025-11-28 00:00:36] 2025-11-28 04:59:27,471 | INFO     | mean x: 1764269984.7628424
[2025-11-28 00:00:36] 2025-11-28 04:59:27,471 | INFO     | mean y: 2865255.0282534244
[2025-11-28 00:00:36] 2025-11-28 04:59:27,471 | INFO     | intersect: -8222484294.438479
[2025-11-28 00:00:36] 2025-11-28 04:59:27,472 | INFO     | chi2: 11.985007829494016
[2025-11-28 00:00:36] 2025-11-28 04:59:27,473 | INFO     | current chi2=11.985007829494016 (change=20.119011823540486 %)
[2025-11-28 00:00:36] 2025-11-28 04:59:27,473 | INFO     | right removable region: 1167
[2025-11-28 00:00:36] 2025-11-28 04:59:27,474 | INFO     | sum of square deviations: 494074578969.307
[2025-11-28 00:00:36] 2025-11-28 04:59:27,509 | INFO     | sum of deviations: 1491726426952.4458
[2025-11-28 00:00:36] 2025-11-28 04:59:27,509 | INFO     | mean x: 1764270289.7628424
[2025-11-28 00:00:36] 2025-11-28 04:59:27,509 | INFO     | mean y: 2866687.4203767125
[2025-11-28 00:00:36] 2025-11-28 04:59:27,509 | INFO     | intersect: -5323876941.074979
[2025-11-28 00:00:36] 2025-11-28 04:59:27,511 | INFO     | chi2: 11.410518425004238
[2025-11-28 00:00:36] 2025-11-28 04:59:27,511 | INFO     | current chi2=11.410518425004238 (change=23.948027372000638 %)
[2025-11-28 00:00:36] 2025-11-28 04:59:27,511 | INFO     | left removable region: 10
[2025-11-28 00:00:36] 2025-11-28 04:59:27,513 | INFO     | sum of square deviations: 480246321298.8418
[2025-11-28 00:00:36] 2025-11-28 04:59:27,546 | INFO     | sum of deviations: 1698261672735.9487
[2025-11-28 00:00:36] 2025-11-28 04:59:27,547 | INFO     | mean x: 1764270259.2912705
[2025-11-28 00:00:36] 2025-11-28 04:59:27,547 | INFO     | mean y: 2883345.074330164
[2025-11-28 00:00:36] 2025-11-28 04:59:27,547 | INFO     | intersect: -6235982896.730456
[2025-11-28 00:00:36] 2025-11-28 04:59:27,548 | INFO     | chi2: 6.721881231451498
[2025-11-28 00:00:36] 2025-11-28 04:59:27,549 | INFO     | current memory leak: 3.54 B/s (using 1157 data points, chi2=6.72)
[2025-11-28 00:00:36] 2025-11-28 04:59:27,550 | INFO     | could have reported an average CPU frequency of 2694 MHz (42 samples)
[2025-11-28 00:00:36] 2025-11-28 04:59:27,551 | INFO     | ..............................
[2025-11-28 00:00:36] 2025-11-28 04:59:27,551 | INFO     | . Timing measurements:
[2025-11-28 00:00:36] 2025-11-28 04:59:27,551 | INFO     | . get job = 0 s
[2025-11-28 00:00:36] 2025-11-28 04:59:27,551 | INFO     | . initial setup = 5 s
[2025-11-28 00:00:36] 2025-11-28 04:59:27,551 | INFO     | . payload setup = 40 s
[2025-11-28 00:00:36] 2025-11-28 04:59:27,551 | INFO     | . stage-in = 0 s
[2025-11-28 00:00:36] 2025-11-28 04:59:27,551 | INFO     | . payload execution = 71564 s
[2025-11-28 00:00:36] 2025-11-28 04:59:27,551 | INFO     | . stage-out = 11 s
[2025-11-28 00:00:36] 2025-11-28 04:59:27,551 | INFO     | . log creation = 3 s
[2025-11-28 00:00:36] 2025-11-28 04:59:27,551 | INFO     | ..............................
[2025-11-28 00:00:36] 2025-11-28 04:59:27,657 | INFO     | 
[2025-11-28 00:00:36] 2025-11-28 04:59:27,657 | INFO     | job summary report
[2025-11-28 00:00:36] 2025-11-28 04:59:27,657 | INFO     | --------------------------------------------------
[2025-11-28 00:00:36] 2025-11-28 04:59:27,657 | INFO     | PanDA job id: 6891583684
[2025-11-28 00:00:36] 2025-11-28 04:59:27,658 | INFO     | task id: 47493068
[2025-11-28 00:00:36] 2025-11-28 04:59:27,658 | INFO     | errors: (none)
[2025-11-28 00:00:36] 2025-11-28 04:59:27,658 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 00:00:36] 2025-11-28 04:59:27,658 | INFO     | pilot state: finished 
[2025-11-28 00:00:36] 2025-11-28 04:59:27,658 | INFO     | transexitcode: 0
[2025-11-28 00:00:36] 2025-11-28 04:59:27,658 | INFO     | exeerrorcode: 0
[2025-11-28 00:00:36] 2025-11-28 04:59:27,658 | INFO     | exeerrordiag: 
[2025-11-28 00:00:36] 2025-11-28 04:59:27,658 | INFO     | exitcode: 0
[2025-11-28 00:00:36] 2025-11-28 04:59:27,658 | INFO     | exitmsg: OK
[2025-11-28 00:00:36] 2025-11-28 04:59:27,658 | INFO     | cpuconsumptiontime: 266281 s
[2025-11-28 00:00:36] 2025-11-28 04:59:27,658 | INFO     | nevents: 1000
[2025-11-28 00:00:36] 2025-11-28 04:59:27,658 | INFO     | neventsw: 0
[2025-11-28 00:00:36] 2025-11-28 04:59:27,659 | INFO     | pid: 542684
[2025-11-28 00:00:36] 2025-11-28 04:59:27,659 | INFO     | pgrp: 542684
[2025-11-28 00:00:36] 2025-11-28 04:59:27,659 | INFO     | corecount: 8
[2025-11-28 00:00:36] 2025-11-28 04:59:27,659 | INFO     | event service: False
[2025-11-28 00:00:36] 2025-11-28 04:59:27,659 | INFO     | sizes: {0: 2284132, 1: 2284331, 12: 2284331, 23: 2284359, 26: 2284649, 34: 2284677, 71607: 2341305, 71619: 2350299, 71622: 2350355, 71648: 2350601}
[2025-11-28 00:00:36] 2025-11-28 04:59:27,659 | INFO     | --------------------------------------------------
[2025-11-28 00:00:36] 2025-11-28 04:59:27,659 | INFO     | 
[2025-11-28 00:00:36] 2025-11-28 04:59:27,659 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-28 00:00:36] 2025-11-28 04:59:27,756 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 00:00:36] 2025-11-28 04:59:27,756 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 00:00:36] 2025-11-28 04:59:27,756 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 00:00:36] 2025-11-28 04:59:27,756 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 00:00:36] 2025-11-28 04:59:27,756 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 00:00:36] 2025-11-28 04:59:27,756 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 00:00:36] 2025-11-28 04:59:27,756 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 00:00:36] 2025-11-28 04:59:27,757 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 00:00:36] 2025-11-28 04:59:27,757 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 00:00:36] 2025-11-28 04:59:27,757 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 00:00:36] 2025-11-28 04:59:27,757 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 00:00:36] 2025-11-28 04:59:27,757 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 00:00:36] 2025-11-28 04:59:27,757 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 00:00:36] 2025-11-28 04:59:27,757 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 00:00:36] 2025-11-28 04:59:27,757 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 00:00:36] 2025-11-28 04:59:27,757 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 00:00:36] 2025-11-28 04:59:27,757 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 00:00:36] 2025-11-28 04:59:27,757 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 00:00:36] 2025-11-28 04:59:27,757 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 00:00:36] 2025-11-28 04:59:27,757 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 00:00:36] 2025-11-28 04:59:27,758 | INFO     | job 6891583684 has completed (purged errors)
[2025-11-28 00:00:36] 2025-11-28 04:59:27,758 | INFO     | overall cleanup function is called
[2025-11-28 00:00:36] 2025-11-28 04:59:28,825 | INFO     | --- collectZombieJob: --- 10, [542684]
[2025-11-28 00:00:36] 2025-11-28 04:59:28,826 | INFO     | zombie collector waiting for pid 542684
[2025-11-28 00:00:36] 2025-11-28 04:59:28,826 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 00:00:36] 2025-11-28 04:59:28,826 | INFO     | collected zombie processes
[2025-11-28 00:00:36] 2025-11-28 04:59:28,826 | INFO     | will attempt to kill all subprocesses of pid=542684
[2025-11-28 00:00:36] 2025-11-28 04:59:31,016 | INFO     | process IDs to be killed: [542684] (in reverse order)
[2025-11-28 00:00:36] 2025-11-28 04:59:31,263 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 00:00:36] 2025-11-28 04:59:31,264 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 00:00:36] 2025-11-28 04:59:31,361 | INFO     | did not find any defunct processes belonging to 542684
[2025-11-28 00:00:36] 2025-11-28 04:59:31,495 | INFO     | did not find any defunct processes belonging to 542684
[2025-11-28 00:00:36] 2025-11-28 04:59:31,531 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 00:00:36] 2025-11-28 04:59:31,531 | INFO     | ready for new job
[2025-11-28 00:00:36] 2025-11-28 04:59:31,531 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 00:00:36] 2025-11-28 04:59:31,555 | INFO     | ***************************************
[2025-11-28 00:00:36] 2025-11-28 04:59:31,556 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 00:00:36] 2025-11-28 04:59:31,556 | INFO     | ***************************************
[2025-11-28 00:00:36] 2025-11-28 04:59:31,556 | INFO     | 
[2025-11-28 00:00:36] 2025-11-28 04:59:31,581 | INFO     | architecture information:
[2025-11-28 00:00:36] 2025-11-28 04:59:31,589 | INFO     | executing command: cat /etc/os-release
[2025-11-28 00:00:36] 2025-11-28 04:59:31,647 | INFO     | cat /etc/os-release:
[2025-11-28 00:00:36] NAME="CentOS Linux"
[2025-11-28 00:00:36] VERSION="7 (Core)"
[2025-11-28 00:00:36] ID="centos"
[2025-11-28 00:00:36] ID_LIKE="rhel fedora"
[2025-11-28 00:00:36] VERSION_ID="7"
[2025-11-28 00:00:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 00:00:36] ANSI_COLOR="0;31"
[2025-11-28 00:00:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 00:00:36] HOME_URL="https://www.centos.org/"
[2025-11-28 00:00:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 00:00:36] 
[2025-11-28 00:00:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 00:00:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 00:00:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 00:00:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 00:00:36] 
[2025-11-28 00:00:36] 2025-11-28 04:59:31,647 | INFO     | ***************************************
[2025-11-28 00:00:36] 2025-11-28 04:59:32,152 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-28 00:00:36] 2025-11-28 04:59:32,300 | INFO     | sufficient remaining disk space (89544196096 B)
[2025-11-28 00:00:36] 2025-11-28 04:59:32,300 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 00:00:36] 2025-11-28 04:59:32,301 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 00:00:36] 2025-11-28 04:59:32,301 | INFO     | update_server=False
[2025-11-28 00:00:36] 2025-11-28 04:59:32,301 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 00:00:36] 2025-11-28 04:59:32,301 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 00:00:36] 2025-11-28 04:59:32,301 | INFO     | aborting loop
[2025-11-28 00:00:36] 2025-11-28 04:59:32,716 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 00:00:36] 2025-11-28 04:59:32,777 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 00:00:36] 2025-11-28 04:59:32,959 | INFO     | all data control threads have been joined
[2025-11-28 00:00:36] 2025-11-28 04:59:33,196 | INFO     | all job control threads have been joined
[2025-11-28 00:00:36] 2025-11-28 04:59:33,306 | INFO     | [job] retrieve thread has finished
[2025-11-28 00:00:36] 2025-11-28 04:59:33,307 | INFO     | [job] job monitor thread has finished
[2025-11-28 00:00:36] 2025-11-28 04:59:33,398 | INFO     | all payload control threads have been joined
[2025-11-28 00:00:36] 2025-11-28 04:59:33,429 | INFO     | [payload] failed_post thread has finished
[2025-11-28 00:00:36] 2025-11-28 04:59:33,588 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 00:00:36] 2025-11-28 04:59:33,722 | INFO     | [job] queue monitor thread has finished
[2025-11-28 00:00:36] 2025-11-28 04:59:33,965 | INFO     | [data] control thread has finished
[2025-11-28 00:00:36] 2025-11-28 04:59:34,025 | INFO     | [payload] validate_post thread has finished
[2025-11-28 00:00:36] 2025-11-28 04:59:34,044 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 00:00:36] 2025-11-28 04:59:34,111 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 00:00:36] 2025-11-28 04:59:34,202 | INFO     | [job] control thread has finished
[2025-11-28 00:00:36] 2025-11-28 04:59:34,366 | INFO     | [job] validate thread has finished
[2025-11-28 00:00:36] 2025-11-28 04:59:34,404 | INFO     | [payload] control thread has finished
[2025-11-28 00:00:36] 2025-11-28 04:59:34,615 | INFO     | [data] copytool_in thread has finished
[2025-11-28 00:00:36] 2025-11-28 04:59:34,783 | INFO     | [data] copytool_out thread has finished
[2025-11-28 00:00:36] 2025-11-28 04:59:34,804 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 00:00:36] 2025-11-28 04:59:35,375 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 00:00:36] 2025-11-28 04:59:39,386 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 00:00:36] 2025-11-28 05:00:00,794 | INFO     | PID=533715 has CPU usage=5.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-28 00:00:36] 2025-11-28 05:00:00,795 | INFO     | .. there are 67 such processes running
[2025-11-28 00:00:36] 2025-11-28 05:00:00,796 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 00:00:36] 2025-11-28 05:00:00,796 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 00:00:36] 2025-11-28 05:00:00,797 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 00:00:36] 2025-11-28 05:00:27,926 | INFO     | [monitor] cgroup control has ended
[2025-11-28 00:00:36] 2025-11-28 05:00:29,814 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140527266342720)>', '<ExcThread(monitor, started 140526984595200)>']
[2025-11-28 00:00:36] 2025-11-28 05:00:30,008 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 00:00:36] 2025-11-28 05:00:30,009 | INFO     | [monitor] control thread has ended
[2025-11-28 00:00:36] 2025-11-28 05:00:34,840 | INFO     | all workflow threads have been joined
[2025-11-28 00:00:36] 2025-11-28 05:00:34,841 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 00:00:36] 2025-11-28 05:00:34,841 | INFO     | traces error code: 0
[2025-11-28 00:00:36] 2025-11-28 05:00:34,841 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 00:00:36] 2025-11-28 05:00:35,383 [wrapper] ==== pilot stdout END ====
[2025-11-28 00:00:36] 2025-11-28 05:00:35,403 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 00:00:36] 2025-11-28 05:00:35,409 [wrapper] pilotpid: 533715
[2025-11-28 00:00:36] 2025-11-28 05:00:35,429 [wrapper] Pilot exit status: 0
[2025-11-28 00:00:36] 2025-11-28 05:00:35,468 [wrapper] pandaids: 6891583684
[2025-11-28 00:00:36] 2025-11-28 05:00:35,599 [wrapper] cleanup supervisor_pilot  601169 533716
[2025-11-28 00:00:36] 2025-11-28 05:00:35,617 [wrapper] Test setup, not cleaning
[2025-11-28 00:00:36] 2025-11-28 05:00:35,654 [wrapper] apfmon messages muted
[2025-11-28 00:00:36] 2025-11-28 05:00:35,689 [wrapper] ==== wrapper stdout END ====
[2025-11-28 00:00:36] 2025-11-28 05:00:35,709 [wrapper] ==== wrapper stderr END ====
[2025-11-28 00:00:36]  *** Error codes and diagnostics ***
[2025-11-28 00:00:36]     "exeErrorCode": 0,
[2025-11-28 00:00:36]     "exeErrorDiag": "",
[2025-11-28 00:00:36]     "pilotErrorCode": 0,
[2025-11-28 00:00:36]     "pilotErrorDiag": "",
[2025-11-28 00:00:36]  *** Listing of results directory ***
[2025-11-28 00:00:36] total 1330020
[2025-11-28 00:00:36] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 11:45 pilot3.tar.gz
[2025-11-28 00:00:36] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 12:09 queuedata.json
[2025-11-28 00:00:36] -rwx------. 1 boincer umatlas     36292 Nov 18 12:10 runpilot2-wrapper.sh
[2025-11-28 00:00:36] -rw-r--r--. 1 boincer umatlas       100 Nov 27 04:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 00:00:36] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 04:03 run_atlas
[2025-11-28 00:00:36] -rw-r--r--. 1 boincer umatlas       105 Nov 27 04:03 job.xml
[2025-11-28 00:00:36] -rw-r--r--. 2 boincer umatlas 412999535 Nov 27 04:03 EVNT.47493065._000437.pool.root.1
[2025-11-28 00:00:36] -rw-r--r--. 2 boincer umatlas     15120 Nov 27 04:03 start_atlas.sh
[2025-11-28 00:00:36] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 04:03 shared
[2025-11-28 00:00:36] -rw-r--r--. 2 boincer umatlas    590096 Nov 27 04:03 input.tar.gz
[2025-11-28 00:00:36] -rw-r--r--. 1 boincer umatlas         0 Nov 27 04:03 boinc_lockfile
[2025-11-28 00:00:36] -rw-r--r--. 1 boincer umatlas      2772 Nov 27 04:03 pandaJob.out
[2025-11-28 00:00:36] -rw-------. 1 boincer umatlas    991573 Nov 27 04:04 agis_schedconf.cvmfs.json
[2025-11-28 00:00:36] drwx------. 5 boincer umatlas      4096 Nov 27 04:04 pilot3
[2025-11-28 00:00:36] -rw-r--r--. 1 boincer umatlas       533 Nov 27 23:33 boinc_task_state.xml
[2025-11-28 00:00:36] -rw-r--r--. 1 boincer umatlas      6882 Nov 27 23:56 init_data.xml
[2025-11-28 00:00:36] -rw-------. 1 boincer umatlas 923617754 Nov 27 23:57 HITS.47493068._004362.pool.root.1
[2025-11-28 00:00:36] -rw-------. 1 boincer umatlas      1059 Nov 27 23:58 memory_monitor_summary.json
[2025-11-28 00:00:36] -rw-------. 1 boincer umatlas   1516240 Nov 27 23:58 agis_ddmendpoints.agis.ALL.json
[2025-11-28 00:00:36] -rw-------. 1 boincer umatlas   2239467 Nov 27 23:58 log.47493068._004362.job.log.tgz.1
[2025-11-28 00:00:36] -rw-------. 1 boincer umatlas      8626 Nov 27 23:59 heartbeat.json
[2025-11-28 00:00:36] -rw-------. 1 boincer umatlas        95 Nov 28 00:00 pilot_heartbeat.json
[2025-11-28 00:00:36] -rw-------. 1 boincer umatlas      4823 Nov 28 00:00 pilotlog.txt
[2025-11-28 00:00:36] -rw-r--r--. 1 boincer umatlas        29 Nov 28 00:00 wrapper_checkpoint.txt
[2025-11-28 00:00:36] -rw-r--r--. 1 boincer umatlas      8192 Nov 28 00:00 boinc_mmap_file
[2025-11-28 00:00:36] -rw-------. 1 boincer umatlas   8462707 Nov 28 00:00 log.47493068._004362.job.log.1
[2025-11-28 00:00:36] -rw-------. 1 boincer umatlas       353 Nov 28 00:00 output.list
[2025-11-28 00:00:36] -rw-r--r--. 1 boincer umatlas       620 Nov 28 00:00 runtime_log
[2025-11-28 00:00:36] -rw-------. 1 boincer umatlas  10721280 Nov 28 00:00 result.tar.gz
[2025-11-28 00:00:36] -rw-r--r--. 1 boincer umatlas      8714 Nov 28 00:00 runtime_log.err
[2025-11-28 00:00:36] -rw-------. 1 boincer umatlas       662 Nov 28 00:00 IJNNDmVOef8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm9WFKDmY25Mlm.diag
[2025-11-28 00:00:36] -rw-r--r--. 1 boincer umatlas     21891 Nov 28 00:00 stderr.txt
[2025-11-28 00:00:36] HITS file was successfully produced:
[2025-11-28 00:00:36] -rw-------. 1 boincer umatlas 923617754 Nov 27 23:57 shared/HITS.pool.root.1
[2025-11-28 00:00:36]  *** Contents of shared directory: ***
[2025-11-28 00:00:36] total 1316368
[2025-11-28 00:00:36] -rw-r--r--. 2 boincer umatlas 412999535 Nov 27 04:03 ATLAS.root_0
[2025-11-28 00:00:36] -rw-r--r--. 2 boincer umatlas     15120 Nov 27 04:03 start_atlas.sh
[2025-11-28 00:00:36] -rw-r--r--. 2 boincer umatlas    590096 Nov 27 04:03 input.tar.gz
[2025-11-28 00:00:36] -rw-------. 1 boincer umatlas 923617754 Nov 27 23:57 HITS.pool.root.1
[2025-11-28 00:00:36] -rw-------. 1 boincer umatlas  10721280 Nov 28 00:00 result.tar.gz
00:00:38 (529113): run_atlas exited; CPU time 269701.618802
00:00:38 (529113): called boinc_finish(0)

</stderr_txt>
]]>

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