Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:51:11 (3586146): wrapper (7.7.26015): starting
09:51:11 (3586146): wrapper: running run_atlas (--nthreads 3)
[2025-11-27 09:51:11] Arguments: --nthreads 3
[2025-11-27 09:51:11] Threads: 3
[2025-11-27 09:51:11] Checking for CVMFS
[2025-11-27 09:51:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 09:51:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 09:51:11] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 09:51:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 09:51:12] 2.9.2.0 3252557 72 63036 153357 1 88 35950574 36864001 0 130560 0 1001669 100.000 5248 22331 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-27 09:51:12] CVMFS is ok
[2025-11-27 09:51:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 09:51:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 09:51:12] Further information can be found at the LHC@home message board.
[2025-11-27 09:51:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 09:51:12] Checking for apptainer binary...
[2025-11-27 09:51:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 09:51:12] Running /usr/bin/apptainer --version
[2025-11-27 09:51:12] apptainer version 1.4.1-1.1
[2025-11-27 09:51:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 09:51:12] thA335
[2025-11-27 09:51:12] apptainer works
[2025-11-27 09:51:12] Set ATHENA_PROC_NUMBER=3
[2025-11-27 09:51:12] Set ATHENA_CORE_NUMBER=3
[2025-11-27 09:51:12] Starting ATLAS job with PandaID=6891567781
[2025-11-27 09:51:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 09:55:28]  *** The last 200 lines of the pilot log: ***
[2025-11-27 09:55:28] 2025-11-27 08:54:37,509 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 09:55:28] 2025-11-27 08:54:37,509 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 09:55:28] 2025-11-27 08:54:37,509 | INFO     | update_server=False
[2025-11-27 09:55:28] 2025-11-27 08:54:37,509 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 09:55:28] 2025-11-27 08:54:37,509 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 09:55:28] 2025-11-27 08:54:37,696 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 09:55:28] 2025-11-27 08:54:37,696 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 09:55:28] 2025-11-27 08:54:37,697 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 09:55:28] 2025-11-27 08:54:37,698 | INFO     | will abort loop
[2025-11-27 09:55:28] 2025-11-27 08:54:37,698 | INFO     | all data control threads have been joined
[2025-11-27 09:55:28] 2025-11-27 08:54:37,842 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 09:55:28] 2025-11-27 08:54:38,063 | INFO     | all payload control threads have been joined
[2025-11-27 09:55:28] 2025-11-27 08:54:38,511 | INFO     | [job] retrieve thread has finished
[2025-11-27 09:55:28] 2025-11-27 08:54:38,512 | INFO     | [job] queue monitor thread has finished
[2025-11-27 09:55:28] 2025-11-27 08:54:38,608 | INFO     | all job control threads have been joined
[2025-11-27 09:55:28] 2025-11-27 08:54:38,612 | INFO     | [payload] validate_post thread has finished
[2025-11-27 09:55:28] 2025-11-27 08:54:38,704 | INFO     | [job] job monitor thread has finished
[2025-11-27 09:55:28] 2025-11-27 08:54:38,704 | INFO     | [data] control thread has finished
[2025-11-27 09:55:28] 2025-11-27 08:54:38,856 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 09:55:28] 2025-11-27 08:54:39,021 | INFO     | [job] validate thread has finished
[2025-11-27 09:55:28] 2025-11-27 08:54:39,039 | INFO     | [data] copytool_in thread has finished
[2025-11-27 09:55:28] 2025-11-27 08:54:39,069 | INFO     | [payload] control thread has finished
[2025-11-27 09:55:28] 2025-11-27 08:54:39,092 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 09:55:28] 2025-11-27 08:54:39,151 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 09:55:28] 2025-11-27 08:54:39,256 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 09:55:28] 2025-11-27 08:54:39,614 | INFO     | [job] control thread has finished
[2025-11-27 09:55:28] 2025-11-27 08:54:39,725 | INFO     | [payload] failed_post thread has finished
[2025-11-27 09:55:28] 2025-11-27 08:54:39,814 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 09:55:28] 2025-11-27 08:54:39,849 | INFO     | [data] copytool_out thread has finished
[2025-11-27 09:55:28] 2025-11-27 08:54:43,822 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 09:55:28] 2025-11-27 08:55:07,124 | INFO     | PID=3589869 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 09:55:28] 2025-11-27 08:55:07,124 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 09:55:28] 2025-11-27 08:55:07,136 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 09:55:28] 2025-11-27 08:55:07,136 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 09:55:28] 2025-11-27 08:55:22,279 | INFO     | [monitor] cgroup control has ended
[2025-11-27 09:55:28] 2025-11-27 08:55:23,538 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139795288360768)>', '<ExcThread(monitor, started 139794625566464)>']
[2025-11-27 09:55:28] 2025-11-27 08:55:24,225 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 09:55:28] 2025-11-27 08:55:24,226 | INFO     | [monitor] control thread has ended
[2025-11-27 09:55:28] 2025-11-27 08:55:28,564 | INFO     | all workflow threads have been joined
[2025-11-27 09:55:28] 2025-11-27 08:55:28,565 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 09:55:28] 2025-11-27 08:55:28,565 | INFO     | traces error code: 0
[2025-11-27 09:55:28] 2025-11-27 08:55:28,566 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 09:55:28] 2025-11-27 08:55:28,612 [wrapper] ==== pilot stdout END ====
[2025-11-27 09:55:28] 2025-11-27 08:55:28,615 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 09:55:28] 2025-11-27 08:55:28,618 [wrapper] pilotpid: 3589869
[2025-11-27 09:55:28] 2025-11-27 08:55:28,621 [wrapper] Pilot exit status: 0
[2025-11-27 09:55:28] 2025-11-27 08:55:28,627 [wrapper] pandaids: 6891567781
[2025-11-27 09:55:28] 2025-11-27 08:55:28,644 [wrapper] cleanup supervisor_pilot 3589875 3589870
[2025-11-27 09:55:28] 2025-11-27 08:55:28,647 [wrapper] Test setup, not cleaning
[2025-11-27 09:55:28] 2025-11-27 08:55:28,650 [wrapper] apfmon messages muted
[2025-11-27 09:55:28] 2025-11-27 08:55:28,653 [wrapper] ==== wrapper stdout END ====
[2025-11-27 09:55:28] 2025-11-27 08:55:28,655 [wrapper] ==== wrapper stderr END ====
[2025-11-27 09:55:28]  *** Error codes and diagnostics ***
[2025-11-27 09:55:28]     "exeErrorCode": 65,
[2025-11-27 09:55:28]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-27 09:55:28]     "pilotErrorCode": 1305,
[2025-11-27 09:55:28]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-27 09:55:28]  *** Listing of results directory ***
[2025-11-27 09:55:28] total 404964
[2025-11-27 09:55:28] -rw-r--r-- 1 boinc boinc    576529 Nov 18 16:15 pilot3.tar.gz
[2025-11-27 09:55:28] -rw-r--r-- 1 boinc boinc      5112 Nov 18 16:32 queuedata.json
[2025-11-27 09:55:28] -rwx------ 1 boinc boinc     36292 Nov 18 16:33 runpilot2-wrapper.sh
[2025-11-27 09:55:28] -rw-r--r-- 1 boinc boinc       100 Nov 27 09:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 09:55:28] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 09:51 run_atlas
[2025-11-27 09:55:28] -rw-r--r-- 1 boinc boinc       105 Nov 27 09:51 job.xml
[2025-11-27 09:55:28] -rw-r--r-- 2 boinc boinc 410476728 Nov 27 09:51 EVNT.47493065._000173.pool.root.1
[2025-11-27 09:55:28] -rw-r--r-- 2 boinc boinc    590104 Nov 27 09:51 input.tar.gz
[2025-11-27 09:55:28] -rw-r--r-- 2 boinc boinc     15120 Nov 27 09:51 start_atlas.sh
[2025-11-27 09:55:28] drwxrwx--x 2 boinc boinc      4096 Nov 27 09:51 shared
[2025-11-27 09:55:28] -rw-r--r-- 1 boinc boinc         0 Nov 27 09:51 boinc_setup_complete
[2025-11-27 09:55:28] -rw-r--r-- 1 boinc boinc      6196 Nov 27 09:51 init_data.xml
[2025-11-27 09:55:28] -rw-r--r-- 1 boinc boinc         0 Nov 27 09:51 boinc_lockfile
[2025-11-27 09:55:28] -rw-r--r-- 1 boinc boinc      2773 Nov 27 09:51 pandaJob.out
[2025-11-27 09:55:28] -rw------- 1 boinc boinc    991573 Nov 27 09:51 agis_schedconf.cvmfs.json
[2025-11-27 09:55:28] -rw------- 1 boinc boinc   1516240 Nov 27 09:51 agis_ddmendpoints.agis.ALL.json
[2025-11-27 09:55:28] drwx------ 5 boinc boinc      4096 Nov 27 09:51 pilot3
[2025-11-27 09:55:28] -rw-r--r-- 1 boinc boinc       522 Nov 27 09:52 boinc_task_state.xml
[2025-11-27 09:55:28] -rw------- 1 boinc boinc       954 Nov 27 09:52 memory_monitor_summary.json
[2025-11-27 09:55:28] -rw------- 1 boinc boinc     55986 Nov 27 09:52 log.47493068._001727.job.log.tgz.1
[2025-11-27 09:55:28] -rw------- 1 boinc boinc        95 Nov 27 09:54 pilot_heartbeat.json
[2025-11-27 09:55:28] -rw------- 1 boinc boinc      8405 Nov 27 09:54 heartbeat.json
[2025-11-27 09:55:28] -rw-r--r-- 1 boinc boinc      8192 Nov 27 09:55 boinc_mmap_file
[2025-11-27 09:55:28] -rw-r--r-- 1 boinc boinc        22 Nov 27 09:55 wrapper_checkpoint.txt
[2025-11-27 09:55:28] -rw------- 1 boinc boinc      4938 Nov 27 09:55 pilotlog.txt
[2025-11-27 09:55:28] -rw------- 1 boinc boinc     93536 Nov 27 09:55 log.47493068._001727.job.log.1
[2025-11-27 09:55:28] -rw------- 1 boinc boinc       186 Nov 27 09:55 output.list
[2025-11-27 09:55:28] -rw-r--r-- 1 boinc boinc       620 Nov 27 09:55 runtime_log
[2025-11-27 09:55:28] -rw------- 1 boinc boinc    174080 Nov 27 09:55 result.tar.gz
[2025-11-27 09:55:28] -rw------- 1 boinc boinc       649 Nov 27 09:55 tbWKDmXtcf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmNJFKDmVjwCjn.diag
[2025-11-27 09:55:28] -rw-r--r-- 1 boinc boinc      8624 Nov 27 09:55 runtime_log.err
[2025-11-27 09:55:28] -rw-r--r-- 1 boinc boinc      8248 Nov 27 09:55 stderr.txt
[2025-11-27 09:55:28] No HITS result produced
[2025-11-27 09:55:28]  *** Contents of shared directory: ***
[2025-11-27 09:55:28] total 401632
[2025-11-27 09:55:28] -rw-r--r-- 2 boinc boinc 410476728 Nov 27 09:51 ATLAS.root_0
[2025-11-27 09:55:28] -rw-r--r-- 2 boinc boinc    590104 Nov 27 09:51 input.tar.gz
[2025-11-27 09:55:28] -rw-r--r-- 2 boinc boinc     15120 Nov 27 09:51 start_atlas.sh
[2025-11-27 09:55:28] -rw------- 1 boinc boinc    174080 Nov 27 09:55 result.tar.gz
09:55:30 (3586146): run_atlas exited; CPU time 31.791113
09:55:30 (3586146): called boinc_finish(0)

</stderr_txt>
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