Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
04:33:36 (26026): wrapper (7.7.26015): starting
04:33:36 (26026): wrapper: running run_atlas (--nthreads 12)
[2025-11-27 04:33:36] Arguments: --nthreads 12
[2025-11-27 04:33:36] Threads: 12
[2025-11-27 04:33:36] Checking for CVMFS
[2025-11-27 04:33:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 04:33:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 04:33:36] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 04:33:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 04:33:36] 2.11.2.0 2925 288947 95224 153358 1 82 10737238 20275201 1 130560 1 128830843 99.975 15831854 13737 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 04:33:36] CVMFS is ok
[2025-11-27 04:33:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 04:33:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 04:33:36] Further information can be found at the LHC@home message board.
[2025-11-27 04:33:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 04:33:36] Checking for apptainer binary...
[2025-11-27 04:33:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 04:33:36] Running /usr/bin/apptainer --version
[2025-11-27 04:33:36] apptainer version 1.3.2-1.el7
[2025-11-27 04:33:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 04:33:38] c-205-10.aglt2.org
[2025-11-27 04:33:38] apptainer works
[2025-11-27 04:33:38] Set ATHENA_PROC_NUMBER=12
[2025-11-27 04:33:38] Set ATHENA_CORE_NUMBER=12
[2025-11-27 04:33:38] Starting ATLAS job with PandaID=6896764772
[2025-11-27 04:33:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 13:44:51]  *** The last 200 lines of the pilot log: ***
[2025-11-27 13:44:51] 2025-11-27 18:44:16,769 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 13:44:51] 2025-11-27 18:44:18,050 | INFO     | time since job start (33025s) is within the limit (172800.0s)
[2025-11-27 13:44:51] 2025-11-27 18:44:19,272 | INFO     | monitor loop #2480: job 0:6896764772 is in state 'finished'
[2025-11-27 13:44:51] 2025-11-27 18:44:19,272 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 13:44:51] 2025-11-27 18:44:19,351 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-27 13:44:51] 2025-11-27 18:44:19,355 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-11-27 13:44:51] 2025-11-27 18:44:19,358 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6896764772/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 13:44:51] 2025-11-27 18:44:19,358 | INFO     | extracted standard info from prmon json
[2025-11-27 13:44:51] 2025-11-27 18:44:19,358 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 13:44:51] 2025-11-27 18:44:19,358 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 13:44:51] 2025-11-27 18:44:19,366 | INFO     | fitting pss+swap vs Time
[2025-11-27 13:44:51] 2025-11-27 18:44:19,367 | INFO     | sum of square deviations: 49098645063.74125
[2025-11-27 13:44:51] 2025-11-27 18:44:19,373 | INFO     | sum of deviations: 647684683004.8143
[2025-11-27 13:44:51] 2025-11-27 18:44:19,373 | INFO     | mean x: 1764252533.0887246
[2025-11-27 13:44:51] 2025-11-27 18:44:19,373 | INFO     | mean y: 3437723.92051756
[2025-11-27 13:44:51] 2025-11-27 18:44:19,373 | INFO     | intersect: -23269696211.864323
[2025-11-27 13:44:51] 2025-11-27 18:44:19,374 | INFO     | chi2: 5.663339237960574
[2025-11-27 13:44:51] 2025-11-27 18:44:19,374 | INFO     | sum of square deviations: 47749871623.70143
[2025-11-27 13:44:51] 2025-11-27 18:44:19,380 | INFO     | sum of deviations: 839752036682.457
[2025-11-27 13:44:51] 2025-11-27 18:44:19,381 | INFO     | mean x: 1764252380.5895522
[2025-11-27 13:44:51] 2025-11-27 18:44:19,381 | INFO     | mean y: 3459422.438432836
[2025-11-27 13:44:51] 2025-11-27 18:44:19,381 | INFO     | intersect: -31023525141.988457
[2025-11-27 13:44:51] 2025-11-27 18:44:19,381 | INFO     | chi2: 3.0571777952158983
[2025-11-27 13:44:51] 2025-11-27 18:44:19,382 | INFO     | current chi2=3.0571777952158983 (change=46.018105807187716 %)
[2025-11-27 13:44:51] 2025-11-27 18:44:19,382 | INFO     | sum of square deviations: 46426028883.661125
[2025-11-27 13:44:51] 2025-11-27 18:44:19,388 | INFO     | sum of deviations: 893512438515.4288
[2025-11-27 13:44:51] 2025-11-27 18:44:19,388 | INFO     | mean x: 1764252228.0903955
[2025-11-27 13:44:51] 2025-11-27 18:44:19,388 | INFO     | mean y: 3465591.9077212806
[2025-11-27 13:44:51] 2025-11-27 18:44:19,388 | INFO     | intersect: -33951222077.536892
[2025-11-27 13:44:51] 2025-11-27 18:44:19,389 | INFO     | chi2: 2.6520633488000613
[2025-11-27 13:44:51] 2025-11-27 18:44:19,389 | INFO     | current chi2=2.6520633488000613 (change=13.251255685874419 %)
[2025-11-27 13:44:51] 2025-11-27 18:44:19,389 | INFO     | right removable region: 530
[2025-11-27 13:44:51] 2025-11-27 18:44:19,390 | INFO     | sum of square deviations: 47749842343.70142
[2025-11-27 13:44:51] 2025-11-27 18:44:19,396 | INFO     | sum of deviations: 460596027876.8213
[2025-11-27 13:44:51] 2025-11-27 18:44:19,396 | INFO     | mean x: 1764252685.5895522
[2025-11-27 13:44:51] 2025-11-27 18:44:19,396 | INFO     | mean y: 3458831.5037313434
[2025-11-27 13:44:51] 2025-11-27 18:44:19,396 | INFO     | intersect: -17014561318.268587
[2025-11-27 13:44:51] 2025-11-27 18:44:19,397 | INFO     | chi2: 3.198155339398955
[2025-11-27 13:44:51] 2025-11-27 18:44:19,397 | INFO     | current chi2=3.198155339398955 (change=43.528805091487975 %)
[2025-11-27 13:44:51] 2025-11-27 18:44:19,397 | INFO     | sum of square deviations: 46425970323.661125
[2025-11-27 13:44:51] 2025-11-27 18:44:19,403 | INFO     | sum of deviations: 412745402982.40704
[2025-11-27 13:44:51] 2025-11-27 18:44:19,403 | INFO     | mean x: 1764252838.0903955
[2025-11-27 13:44:51] 2025-11-27 18:44:19,403 | INFO     | mean y: 3464340.15819209
[2025-11-27 13:44:51] 2025-11-27 18:44:19,403 | INFO     | intersect: -15681447435.382078
[2025-11-27 13:44:51] 2025-11-27 18:44:19,404 | INFO     | chi2: 3.123364515425621
[2025-11-27 13:44:51] 2025-11-27 18:44:19,404 | INFO     | current chi2=3.123364515425621 (change=2.338561327899412 %)
[2025-11-27 13:44:51] 2025-11-27 18:44:19,404 | INFO     | left removable region: 20
[2025-11-27 13:44:51] 2025-11-27 18:44:19,405 | INFO     | sum of square deviations: 41132767028.982185
[2025-11-27 13:44:51] 2025-11-27 18:44:19,410 | INFO     | sum of deviations: 598528652070.6
[2025-11-27 13:44:51] 2025-11-27 18:44:19,410 | INFO     | mean x: 1764252807.5941176
[2025-11-27 13:44:51] 2025-11-27 18:44:19,410 | INFO     | mean y: 3500575.1333333333
[2025-11-27 13:44:51] 2025-11-27 18:44:19,410 | INFO     | intersect: -25668389042.626915
[2025-11-27 13:44:51] 2025-11-27 18:44:19,411 | INFO     | chi2: 0.057782897777988416
[2025-11-27 13:44:51] 2025-11-27 18:44:19,411 | INFO     | current memory leak: 14.55 B/s (using 510 data points, chi2=0.06)
[2025-11-27 13:44:51] 2025-11-27 18:44:19,412 | INFO     | could have reported an average CPU frequency of 2409 MHz (22 samples)
[2025-11-27 13:44:51] 2025-11-27 18:44:19,412 | INFO     | ..............................
[2025-11-27 13:44:51] 2025-11-27 18:44:19,412 | INFO     | . Timing measurements:
[2025-11-27 13:44:51] 2025-11-27 18:44:19,412 | INFO     | . get job = 0 s
[2025-11-27 13:44:51] 2025-11-27 18:44:19,412 | INFO     | . initial setup = 2 s
[2025-11-27 13:44:51] 2025-11-27 18:44:19,412 | INFO     | . payload setup = 7 s
[2025-11-27 13:44:51] 2025-11-27 18:44:19,412 | INFO     | . stage-in = 0 s
[2025-11-27 13:44:51] 2025-11-27 18:44:19,412 | INFO     | . payload execution = 32987 s
[2025-11-27 13:44:51] 2025-11-27 18:44:19,412 | INFO     | . stage-out = 3 s
[2025-11-27 13:44:51] 2025-11-27 18:44:19,413 | INFO     | . log creation = 0 s
[2025-11-27 13:44:51] 2025-11-27 18:44:19,413 | INFO     | ..............................
[2025-11-27 13:44:51] 2025-11-27 18:44:19,495 | INFO     | 
[2025-11-27 13:44:51] 2025-11-27 18:44:19,495 | INFO     | job summary report
[2025-11-27 13:44:51] 2025-11-27 18:44:19,495 | INFO     | --------------------------------------------------
[2025-11-27 13:44:51] 2025-11-27 18:44:19,495 | INFO     | PanDA job id: 6896764772
[2025-11-27 13:44:51] 2025-11-27 18:44:19,495 | INFO     | task id: 47556185
[2025-11-27 13:44:51] 2025-11-27 18:44:19,496 | INFO     | errors: (none)
[2025-11-27 13:44:51] 2025-11-27 18:44:19,496 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 13:44:51] 2025-11-27 18:44:19,496 | INFO     | pilot state: finished 
[2025-11-27 13:44:51] 2025-11-27 18:44:19,496 | INFO     | transexitcode: 0
[2025-11-27 13:44:51] 2025-11-27 18:44:19,496 | INFO     | exeerrorcode: 0
[2025-11-27 13:44:51] 2025-11-27 18:44:19,496 | INFO     | exeerrordiag: 
[2025-11-27 13:44:51] 2025-11-27 18:44:19,496 | INFO     | exitcode: 0
[2025-11-27 13:44:51] 2025-11-27 18:44:19,497 | INFO     | exitmsg: OK
[2025-11-27 13:44:51] 2025-11-27 18:44:19,497 | INFO     | cpuconsumptiontime: 318854 s
[2025-11-27 13:44:51] 2025-11-27 18:44:19,497 | INFO     | nevents: 1000
[2025-11-27 13:44:51] 2025-11-27 18:44:19,497 | INFO     | neventsw: 0
[2025-11-27 13:44:51] 2025-11-27 18:44:19,497 | INFO     | pid: 3876
[2025-11-27 13:44:51] 2025-11-27 18:44:19,497 | INFO     | pgrp: 3876
[2025-11-27 13:44:51] 2025-11-27 18:44:19,498 | INFO     | corecount: 12
[2025-11-27 13:44:51] 2025-11-27 18:44:19,498 | INFO     | event service: False
[2025-11-27 13:44:51] 2025-11-27 18:44:19,498 | INFO     | sizes: {0: 2284141, 1: 2284340, 6: 2284602, 11: 2284630, 32998: 2325368, 33002: 2334362, 33004: 2334546, 33010: 2334792}
[2025-11-27 13:44:51] 2025-11-27 18:44:19,498 | INFO     | --------------------------------------------------
[2025-11-27 13:44:51] 2025-11-27 18:44:19,498 | INFO     | 
[2025-11-27 13:44:51] 2025-11-27 18:44:19,498 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-27 13:44:51] 2025-11-27 18:44:19,522 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 13:44:51] 2025-11-27 18:44:19,522 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 13:44:51] 2025-11-27 18:44:19,523 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 13:44:51] 2025-11-27 18:44:19,523 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 13:44:51] 2025-11-27 18:44:19,523 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 13:44:51] 2025-11-27 18:44:19,523 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 13:44:51] 2025-11-27 18:44:19,523 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 13:44:51] 2025-11-27 18:44:19,524 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 13:44:51] 2025-11-27 18:44:19,524 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 13:44:51] 2025-11-27 18:44:19,524 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 13:44:51] 2025-11-27 18:44:19,524 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 13:44:51] 2025-11-27 18:44:19,524 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 13:44:51] 2025-11-27 18:44:19,524 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 13:44:51] 2025-11-27 18:44:19,525 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 13:44:51] 2025-11-27 18:44:19,525 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 13:44:51] 2025-11-27 18:44:19,525 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 13:44:51] 2025-11-27 18:44:19,525 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 13:44:51] 2025-11-27 18:44:19,525 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 13:44:51] 2025-11-27 18:44:19,525 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 13:44:51] 2025-11-27 18:44:19,526 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 13:44:51] 2025-11-27 18:44:19,526 | INFO     | job 6896764772 has completed (purged errors)
[2025-11-27 13:44:51] 2025-11-27 18:44:19,526 | INFO     | overall cleanup function is called
[2025-11-27 13:44:51] 2025-11-27 18:44:20,542 | INFO     | --- collectZombieJob: --- 10, [3876]
[2025-11-27 13:44:51] 2025-11-27 18:44:20,542 | INFO     | zombie collector waiting for pid 3876
[2025-11-27 13:44:51] 2025-11-27 18:44:20,542 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 13:44:51] 2025-11-27 18:44:20,542 | INFO     | collected zombie processes
[2025-11-27 13:44:51] 2025-11-27 18:44:20,542 | INFO     | will attempt to kill all subprocesses of pid=3876
[2025-11-27 13:44:51] 2025-11-27 18:44:20,633 | INFO     | process IDs to be killed: [3876] (in reverse order)
[2025-11-27 13:44:51] 2025-11-27 18:44:20,718 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 13:44:51] 2025-11-27 18:44:20,719 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 13:44:51] 2025-11-27 18:44:20,722 | INFO     | did not find any defunct processes belonging to 3876
[2025-11-27 13:44:51] 2025-11-27 18:44:20,725 | INFO     | did not find any defunct processes belonging to 3876
[2025-11-27 13:44:51] 2025-11-27 18:44:20,727 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 13:44:51] 2025-11-27 18:44:20,727 | INFO     | ready for new job
[2025-11-27 13:44:51] 2025-11-27 18:44:20,728 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 13:44:51] 2025-11-27 18:44:20,730 | INFO     | ***************************************
[2025-11-27 13:44:51] 2025-11-27 18:44:20,730 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 13:44:51] 2025-11-27 18:44:20,730 | INFO     | ***************************************
[2025-11-27 13:44:51] 2025-11-27 18:44:20,730 | INFO     | 
[2025-11-27 13:44:51] 2025-11-27 18:44:20,731 | INFO     | architecture information:
[2025-11-27 13:44:51] 2025-11-27 18:44:20,731 | INFO     | executing command: cat /etc/os-release
[2025-11-27 13:44:51] 2025-11-27 18:44:20,746 | INFO     | cat /etc/os-release:
[2025-11-27 13:44:51] NAME="CentOS Linux"
[2025-11-27 13:44:51] VERSION="7 (Core)"
[2025-11-27 13:44:51] ID="centos"
[2025-11-27 13:44:51] ID_LIKE="rhel fedora"
[2025-11-27 13:44:51] VERSION_ID="7"
[2025-11-27 13:44:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 13:44:51] ANSI_COLOR="0;31"
[2025-11-27 13:44:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 13:44:51] HOME_URL="https://www.centos.org/"
[2025-11-27 13:44:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 13:44:51] 
[2025-11-27 13:44:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 13:44:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 13:44:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 13:44:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 13:44:51] 
[2025-11-27 13:44:51] 2025-11-27 18:44:20,746 | INFO     | ***************************************
[2025-11-27 13:44:51] 2025-11-27 18:44:21,250 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-27 13:44:51] 2025-11-27 18:44:21,266 | INFO     | sufficient remaining disk space (28247588864 B)
[2025-11-27 13:44:51] 2025-11-27 18:44:21,266 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 13:44:51] 2025-11-27 18:44:21,267 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 13:44:51] 2025-11-27 18:44:21,267 | INFO     | update_server=False
[2025-11-27 13:44:51] 2025-11-27 18:44:21,267 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 13:44:51] 2025-11-27 18:44:21,267 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 13:44:51] 2025-11-27 18:44:21,268 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 13:44:51] 2025-11-27 18:44:21,268 | INFO     | aborting loop
[2025-11-27 13:44:51] 2025-11-27 18:44:21,268 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 13:44:51] 2025-11-27 18:44:21,557 | INFO     | all data control threads have been joined
[2025-11-27 13:44:51] 2025-11-27 18:44:21,964 | INFO     | all payload control threads have been joined
[2025-11-27 13:44:51] 2025-11-27 18:44:22,087 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 13:44:51] 2025-11-27 18:44:22,273 | INFO     | [job] retrieve thread has finished
[2025-11-27 13:44:51] 2025-11-27 18:44:22,274 | INFO     | [job] job monitor thread has finished
[2025-11-27 13:44:51] 2025-11-27 18:44:22,274 | INFO     | [job] queue monitor thread has finished
[2025-11-27 13:44:51] 2025-11-27 18:44:22,406 | INFO     | all job control threads have been joined
[2025-11-27 13:44:51] 2025-11-27 18:44:22,501 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 13:44:51] 2025-11-27 18:44:22,508 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 13:44:51] 2025-11-27 18:44:22,563 | INFO     | [data] control thread has finished
[2025-11-27 13:44:51] 2025-11-27 18:44:22,703 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 13:44:51] 2025-11-27 18:44:22,970 | INFO     | [payload] control thread has finished
[2025-11-27 13:44:51] 2025-11-27 18:44:23,350 | INFO     | [payload] failed_post thread has finished
[2025-11-27 13:44:51] 2025-11-27 18:44:23,412 | INFO     | [job] control thread has finished
[2025-11-27 13:44:51] 2025-11-27 18:44:23,497 | INFO     | [payload] validate_post thread has finished
[2025-11-27 13:44:51] 2025-11-27 18:44:23,580 | INFO     | [job] validate thread has finished
[2025-11-27 13:44:51] 2025-11-27 18:44:23,603 | INFO     | [data] copytool_in thread has finished
[2025-11-27 13:44:51] 2025-11-27 18:44:23,607 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 13:44:51] 2025-11-27 18:44:24,093 | INFO     | [data] copytool_out thread has finished
[2025-11-27 13:44:51] 2025-11-27 18:44:25,274 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 13:44:51] 2025-11-27 18:44:43,017 | INFO     | [monitor] cgroup control has ended
[2025-11-27 13:44:51] 2025-11-27 18:44:43,166 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140378418452288)>', '<ExcThread(monitor, started 140377709340416)>']
[2025-11-27 13:44:51] 2025-11-27 18:44:48,191 | INFO     | all workflow threads have been joined
[2025-11-27 13:44:51] 2025-11-27 18:44:48,196 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 13:44:51] 2025-11-27 18:44:48,196 | INFO     | traces error code: 0
[2025-11-27 13:44:51] 2025-11-27 18:44:48,196 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 13:44:51] 2025-11-27 18:44:51,267 | INFO     | PID=29709 has CPU usage=5.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 13:44:51] 2025-11-27 18:44:51,267 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 13:44:51] 2025-11-27 18:44:51,267 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 13:44:51] 2025-11-27 18:44:51,267 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 13:44:51] 2025-11-27 18:44:51,268 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 13:44:51] 2025-11-27 18:44:51,268 | INFO     | [monitor] control thread has ended
[2025-11-27 13:44:51] 2025-11-27 18:44:51,373 [wrapper] ==== pilot stdout END ====
[2025-11-27 13:44:51] 2025-11-27 18:44:51,378 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 13:44:51] 2025-11-27 18:44:51,381 [wrapper] pilotpid: 29709
[2025-11-27 13:44:51] 2025-11-27 18:44:51,385 [wrapper] Pilot exit status: 0
[2025-11-27 13:44:51] 2025-11-27 18:44:51,399 [wrapper] pandaids: 6896764772
[2025-11-27 13:44:51] 2025-11-27 18:44:51,439 [wrapper] cleanup supervisor_pilot   876 29710
[2025-11-27 13:44:51] 2025-11-27 18:44:51,443 [wrapper] Test setup, not cleaning
[2025-11-27 13:44:51] 2025-11-27 18:44:51,447 [wrapper] apfmon messages muted
[2025-11-27 13:44:51] 2025-11-27 18:44:51,451 [wrapper] ==== wrapper stdout END ====
[2025-11-27 13:44:51] 2025-11-27 18:44:51,455 [wrapper] ==== wrapper stderr END ====
[2025-11-27 13:44:51]  *** Error codes and diagnostics ***
[2025-11-27 13:44:51]     "exeErrorCode": 0,
[2025-11-27 13:44:51]     "exeErrorDiag": "",
[2025-11-27 13:44:51]     "pilotErrorCode": 0,
[2025-11-27 13:44:51]     "pilotErrorDiag": "",
[2025-11-27 13:44:51]  *** Listing of results directory ***
[2025-11-27 13:44:51] total 1312900
[2025-11-27 13:44:51] -rw-r--r-- 1 boincer umatlas    576529 Nov 25 03:55 pilot3.tar.gz
[2025-11-27 13:44:51] -rw-r--r-- 1 boincer umatlas      5112 Nov 25 03:58 queuedata.json
[2025-11-27 13:44:51] -rwx------ 1 boincer umatlas     36292 Nov 25 04:00 runpilot2-wrapper.sh
[2025-11-27 13:44:51] -rw-r--r-- 1 boincer umatlas       100 Nov 27 04:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 13:44:51] -rwxr-xr-x 1 boincer umatlas      7986 Nov 27 04:33 run_atlas
[2025-11-27 13:44:51] -rw-r--r-- 1 boincer umatlas       105 Nov 27 04:33 job.xml
[2025-11-27 13:44:51] -rw-r--r-- 2 boincer umatlas 411117176 Nov 27 04:33 EVNT.47483658._004259.pool.root.1
[2025-11-27 13:44:51] -rw-r--r-- 2 boincer umatlas     15847 Nov 27 04:33 start_atlas.sh
[2025-11-27 13:44:51] drwxrwx--x 2 boincer umatlas      4096 Nov 27 04:33 shared
[2025-11-27 13:44:51] -rw-r--r-- 2 boincer umatlas    590102 Nov 27 04:33 input.tar.gz
[2025-11-27 13:44:51] -rw-r--r-- 1 boincer umatlas         0 Nov 27 04:33 boinc_lockfile
[2025-11-27 13:44:51] -rw-r--r-- 1 boincer umatlas      2784 Nov 27 04:33 pandaJob.out
[2025-11-27 13:44:51] -rw------- 1 boincer umatlas        57 Nov 27 04:33 setup.sh.local
[2025-11-27 13:44:51] -rw------- 1 boincer umatlas    991551 Nov 27 04:33 agis_schedconf.cvmfs.json
[2025-11-27 13:44:51] drwx------ 5 boincer umatlas      4096 Nov 27 04:33 pilot3
[2025-11-27 13:44:51] -rw-r--r-- 1 boincer umatlas       533 Nov 27 13:33 boinc_task_state.xml
[2025-11-27 13:44:51] -rw-r--r-- 1 boincer umatlas      5956 Nov 27 13:39 init_data.xml
[2025-11-27 13:44:51] -rw------- 1 boincer umatlas 915572050 Nov 27 13:43 HITS.47556185._000222.pool.root.1
[2025-11-27 13:44:51] -rw------- 1 boincer umatlas      1065 Nov 27 13:44 memory_monitor_summary.json
[2025-11-27 13:44:51] -rw------- 1 boincer umatlas        95 Nov 27 13:44 pilot_heartbeat.json
[2025-11-27 13:44:51] -rw------- 1 boincer umatlas   1516240 Nov 27 13:44 agis_ddmendpoints.agis.ALL.json
[2025-11-27 13:44:51] -rw------- 1 boincer umatlas   2282701 Nov 27 13:44 log.47556185._000222.job.log.tgz.1
[2025-11-27 13:44:51] -rw------- 1 boincer umatlas      8665 Nov 27 13:44 heartbeat.json
[2025-11-27 13:44:51] -rw-r--r-- 1 boincer umatlas        29 Nov 27 13:44 wrapper_checkpoint.txt
[2025-11-27 13:44:51] -rw-r--r-- 1 boincer umatlas      8192 Nov 27 13:44 boinc_mmap_file
[2025-11-27 13:44:51] -rw------- 1 boincer umatlas       745 Nov 27 13:44 pilotlog.txt
[2025-11-27 13:44:51] -rw------- 1 boincer umatlas   4615294 Nov 27 13:44 log.47556185._000222.job.log.1
[2025-11-27 13:44:51] -rw------- 1 boincer umatlas       353 Nov 27 13:44 output.list
[2025-11-27 13:44:51] -rw-r--r-- 1 boincer umatlas       620 Nov 27 13:44 runtime_log
[2025-11-27 13:44:51] -rw------- 1 boincer umatlas   6922240 Nov 27 13:44 result.tar.gz
[2025-11-27 13:44:51] -rw-r--r-- 1 boincer umatlas      9345 Nov 27 13:44 runtime_log.err
[2025-11-27 13:44:51] -rw------- 1 boincer umatlas       670 Nov 27 13:44 nplNDmC53h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmRHMKDmWl9M9n.diag
[2025-11-27 13:44:51] -rw-r--r-- 1 boincer umatlas     21335 Nov 27 13:44 stderr.txt
[2025-11-27 13:44:51] HITS file was successfully produced:
[2025-11-27 13:44:51] -rw------- 1 boincer umatlas 915572050 Nov 27 13:43 shared/HITS.pool.root.1
[2025-11-27 13:44:51]  *** Contents of shared directory: ***
[2025-11-27 13:44:51] total 1302964
[2025-11-27 13:44:51] -rw-r--r-- 2 boincer umatlas 411117176 Nov 27 04:33 ATLAS.root_0
[2025-11-27 13:44:51] -rw-r--r-- 2 boincer umatlas     15847 Nov 27 04:33 start_atlas.sh
[2025-11-27 13:44:51] -rw-r--r-- 2 boincer umatlas    590102 Nov 27 04:33 input.tar.gz
[2025-11-27 13:44:51] -rw------- 1 boincer umatlas 915572050 Nov 27 13:43 HITS.pool.root.1
[2025-11-27 13:44:51] -rw------- 1 boincer umatlas   6922240 Nov 27 13:44 result.tar.gz
13:44:53 (26026): run_atlas exited; CPU time 307476.927272
13:44:53 (26026): called boinc_finish(0)

</stderr_txt>
]]>

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