Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:48:28 (3294588): wrapper (7.7.26015): starting
08:48:28 (3294588): wrapper: running run_atlas (--nthreads 3)
[2025-11-27 08:48:29] Arguments: --nthreads 3
[2025-11-27 08:48:29] Threads: 3
[2025-11-27 08:48:29] Checking for CVMFS
[2025-11-27 08:48:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 08:48:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 08:48:29] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 08:48:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 08:48:29] 2.9.2.0 3252557 9 49220 153353 2 88 35931213 36864000 0 130560 0 125232 100.000 1 250 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-27 08:48:29] CVMFS is ok
[2025-11-27 08:48:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 08:48:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 08:48:29] Further information can be found at the LHC@home message board.
[2025-11-27 08:48:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 08:48:29] Checking for apptainer binary...
[2025-11-27 08:48:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 08:48:29] Running /usr/bin/apptainer --version
[2025-11-27 08:48:29] apptainer version 1.4.1-1.1
[2025-11-27 08:48:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 08:48:29] thA335
[2025-11-27 08:48:29] apptainer works
[2025-11-27 08:48:29] Set ATHENA_PROC_NUMBER=3
[2025-11-27 08:48:29] Set ATHENA_CORE_NUMBER=3
[2025-11-27 08:48:29] Starting ATLAS job with PandaID=6897508078
[2025-11-27 08:48:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 08:52:46]  *** The last 200 lines of the pilot log: ***
[2025-11-27 08:52:46] 2025-11-27 07:51:57,807 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 08:52:46] 2025-11-27 07:51:57,807 | INFO     | update_server=False
[2025-11-27 08:52:46] 2025-11-27 07:51:57,808 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 08:52:46] 2025-11-27 07:51:57,808 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 08:52:46] 2025-11-27 07:51:57,808 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 08:52:46] 2025-11-27 07:51:57,808 | INFO     | aborting loop
[2025-11-27 08:52:46] 2025-11-27 07:51:57,812 | INFO     | all payload control threads have been joined
[2025-11-27 08:52:46] 2025-11-27 07:51:58,632 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 08:52:46] 2025-11-27 07:51:58,739 | INFO     | all job control threads have been joined
[2025-11-27 08:52:46] 2025-11-27 07:51:58,813 | INFO     | [job] queue monitor thread has finished
[2025-11-27 08:52:46] 2025-11-27 07:51:58,814 | INFO     | [job] retrieve thread has finished
[2025-11-27 08:52:46] 2025-11-27 07:51:58,815 | INFO     | [job] job monitor thread has finished
[2025-11-27 08:52:46] 2025-11-27 07:51:58,818 | INFO     | [payload] control thread has finished
[2025-11-27 08:52:46] 2025-11-27 07:51:58,829 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 08:52:46] 2025-11-27 07:51:58,856 | INFO     | all data control threads have been joined
[2025-11-27 08:52:46] 2025-11-27 07:51:58,881 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 08:52:46] 2025-11-27 07:51:59,052 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 08:52:46] 2025-11-27 07:51:59,096 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 08:52:46] 2025-11-27 07:51:59,631 | INFO     | [payload] failed_post thread has finished
[2025-11-27 08:52:46] 2025-11-27 07:51:59,745 | INFO     | [job] control thread has finished
[2025-11-27 08:52:46] 2025-11-27 07:51:59,862 | INFO     | [data] control thread has finished
[2025-11-27 08:52:46] 2025-11-27 07:52:00,110 | INFO     | [data] copytool_in thread has finished
[2025-11-27 08:52:46] 2025-11-27 07:52:00,189 | INFO     | [payload] validate_post thread has finished
[2025-11-27 08:52:46] 2025-11-27 07:52:00,248 | INFO     | [job] validate thread has finished
[2025-11-27 08:52:46] 2025-11-27 07:52:00,638 | INFO     | [data] copytool_out thread has finished
[2025-11-27 08:52:46] 2025-11-27 07:52:00,945 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 08:52:46] 2025-11-27 07:52:04,952 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 08:52:46] 2025-11-27 07:52:27,939 | INFO     | PID=3298314 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 08:52:46] 2025-11-27 07:52:27,939 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 08:52:46] 2025-11-27 07:52:27,939 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 08:52:46] 2025-11-27 07:52:27,939 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 08:52:46] 2025-11-27 07:52:39,047 | INFO     | [monitor] cgroup control has ended
[2025-11-27 08:52:46] 2025-11-27 07:52:40,756 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140443712784192)>', '<ExcThread(monitor, started 140443073373952)>']
[2025-11-27 08:52:46] 2025-11-27 07:52:41,004 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 08:52:46] 2025-11-27 07:52:41,005 | INFO     | [monitor] control thread has ended
[2025-11-27 08:52:46] 2025-11-27 07:52:45,759 | INFO     | all workflow threads have been joined
[2025-11-27 08:52:46] 2025-11-27 07:52:45,759 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 08:52:46] 2025-11-27 07:52:45,759 | INFO     | traces error code: 0
[2025-11-27 08:52:46] 2025-11-27 07:52:45,760 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 08:52:46] 2025-11-27 07:52:45,802 [wrapper] ==== pilot stdout END ====
[2025-11-27 08:52:46] 2025-11-27 07:52:45,805 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 08:52:46] 2025-11-27 07:52:45,807 [wrapper] pilotpid: 3298314
[2025-11-27 08:52:46] 2025-11-27 07:52:45,809 [wrapper] Pilot exit status: 0
[2025-11-27 08:52:46] 2025-11-27 07:52:45,815 [wrapper] pandaids: 6897508078
[2025-11-27 08:52:46] 2025-11-27 07:52:45,830 [wrapper] cleanup supervisor_pilot 3298320 3298315
[2025-11-27 08:52:46] 2025-11-27 07:52:45,833 [wrapper] Test setup, not cleaning
[2025-11-27 08:52:46] 2025-11-27 07:52:45,836 [wrapper] apfmon messages muted
[2025-11-27 08:52:46] 2025-11-27 07:52:45,838 [wrapper] ==== wrapper stdout END ====
[2025-11-27 08:52:46] 2025-11-27 07:52:45,840 [wrapper] ==== wrapper stderr END ====
[2025-11-27 08:52:46]  *** Error codes and diagnostics ***
[2025-11-27 08:52:46]     "exeErrorCode": 65,
[2025-11-27 08:52:46]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-27 08:52:46]     "pilotErrorCode": 1305,
[2025-11-27 08:52:46]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-27 08:52:46]  *** Listing of results directory ***
[2025-11-27 08:52:46] total 405356
[2025-11-27 08:52:46] -rw-r--r-- 1 boinc boinc    576529 Nov 25 17:48 pilot3.tar.gz
[2025-11-27 08:52:46] -rwx------ 1 boinc boinc     36292 Nov 25 18:01 runpilot2-wrapper.sh
[2025-11-27 08:52:46] -rw-r--r-- 1 boinc boinc      5112 Nov 25 18:02 queuedata.json
[2025-11-27 08:52:46] -rw-r--r-- 1 boinc boinc       100 Nov 27 08:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 08:52:46] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 08:48 run_atlas
[2025-11-27 08:52:46] -rw-r--r-- 1 boinc boinc       105 Nov 27 08:48 job.xml
[2025-11-27 08:52:46] -rw-r--r-- 2 boinc boinc 410885065 Nov 27 08:48 EVNT.47483658._002279.pool.root.1
[2025-11-27 08:52:46] -rw-r--r-- 2 boinc boinc    590109 Nov 27 08:48 input.tar.gz
[2025-11-27 08:52:46] -rw-r--r-- 2 boinc boinc     15847 Nov 27 08:48 start_atlas.sh
[2025-11-27 08:52:46] drwxrwx--x 2 boinc boinc      4096 Nov 27 08:48 shared
[2025-11-27 08:52:46] -rw-r--r-- 1 boinc boinc         0 Nov 27 08:48 boinc_setup_complete
[2025-11-27 08:52:46] -rw-r--r-- 1 boinc boinc      6196 Nov 27 08:48 init_data.xml
[2025-11-27 08:52:46] -rw-r--r-- 1 boinc boinc         0 Nov 27 08:48 boinc_lockfile
[2025-11-27 08:52:46] -rw-r--r-- 1 boinc boinc      2786 Nov 27 08:48 pandaJob.out
[2025-11-27 08:52:46] -rw------- 1 boinc boinc    991570 Nov 27 08:48 agis_schedconf.cvmfs.json
[2025-11-27 08:52:46] -rw------- 1 boinc boinc   1516240 Nov 27 08:48 agis_ddmendpoints.agis.ALL.json
[2025-11-27 08:52:46] drwx------ 5 boinc boinc      4096 Nov 27 08:48 pilot3
[2025-11-27 08:52:46] -rw-r--r-- 1 boinc boinc       522 Nov 27 08:49 boinc_task_state.xml
[2025-11-27 08:52:46] -rw------- 1 boinc boinc       948 Nov 27 08:49 memory_monitor_summary.json
[2025-11-27 08:52:46] -rw------- 1 boinc boinc     56109 Nov 27 08:49 log.47556161._002622.job.log.tgz.1
[2025-11-27 08:52:46] -rw------- 1 boinc boinc        95 Nov 27 08:51 pilot_heartbeat.json
[2025-11-27 08:52:46] -rw------- 1 boinc boinc      8402 Nov 27 08:51 heartbeat.json
[2025-11-27 08:52:46] -rw-r--r-- 1 boinc boinc      8192 Nov 27 08:52 boinc_mmap_file
[2025-11-27 08:52:46] -rw-r--r-- 1 boinc boinc        22 Nov 27 08:52 wrapper_checkpoint.txt
[2025-11-27 08:52:46] -rw------- 1 boinc boinc      4752 Nov 27 08:52 pilotlog.txt
[2025-11-27 08:52:46] -rw------- 1 boinc boinc     93756 Nov 27 08:52 log.47556161._002622.job.log.1
[2025-11-27 08:52:46] -rw------- 1 boinc boinc       186 Nov 27 08:52 output.list
[2025-11-27 08:52:46] -rw-r--r-- 1 boinc boinc       620 Nov 27 08:52 runtime_log
[2025-11-27 08:52:46] -rw------- 1 boinc boinc    174080 Nov 27 08:52 result.tar.gz
[2025-11-27 08:52:46] -rw-r--r-- 1 boinc boinc      8744 Nov 27 08:52 runtime_log.err
[2025-11-27 08:52:46] -rw------- 1 boinc boinc       649 Nov 27 08:52 GmQODm5aBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm0fJKDmiA6R3n.diag
[2025-11-27 08:52:46] -rw-r--r-- 1 boinc boinc      7885 Nov 27 08:52 stderr.txt
[2025-11-27 08:52:46] No HITS result produced
[2025-11-27 08:52:46]  *** Contents of shared directory: ***
[2025-11-27 08:52:46] total 402028
[2025-11-27 08:52:46] -rw-r--r-- 2 boinc boinc 410885065 Nov 27 08:48 ATLAS.root_0
[2025-11-27 08:52:46] -rw-r--r-- 2 boinc boinc    590109 Nov 27 08:48 input.tar.gz
[2025-11-27 08:52:46] -rw-r--r-- 2 boinc boinc     15847 Nov 27 08:48 start_atlas.sh
[2025-11-27 08:52:46] -rw------- 1 boinc boinc    174080 Nov 27 08:52 result.tar.gz
08:52:47 (3294588): run_atlas exited; CPU time 31.317428
08:52:47 (3294588): called boinc_finish(0)

</stderr_txt>
]]>

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