Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
03:04:36 (3463): wrapper (7.7.26015): starting
03:04:36 (3463): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 03:04:36] Arguments: --nthreads 8
[2025-11-27 03:04:36] Threads: 8
[2025-11-27 03:04:36] Checking for CVMFS
[2025-11-27 03:04:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 03:04:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 03:04:36] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 03:04:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 03:04:37] 2.11.2.0 8318 118926 143812 153354 0 89 13064923 18432001 1669 130560 0 85204633 99.973 5166270 31802 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 03:04:37] CVMFS is ok
[2025-11-27 03:04:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 03:04:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 03:04:37] Further information can be found at the LHC@home message board.
[2025-11-27 03:04:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 03:04:37] Checking for apptainer binary...
[2025-11-27 03:04:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 03:04:37] Running /usr/bin/apptainer --version
[2025-11-27 03:04:37] apptainer version 1.3.2-1.el7
[2025-11-27 03:04:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 03:04:38] c-206-28.aglt2.org
[2025-11-27 03:04:38] apptainer works
[2025-11-27 03:04:38] Set ATHENA_PROC_NUMBER=8
[2025-11-27 03:04:38] Set ATHENA_CORE_NUMBER=8
[2025-11-27 03:04:38] Starting ATLAS job with PandaID=6891571898
[2025-11-27 03:04:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
04:28:57 (24165): wrapper (7.7.26015): starting
04:28:57 (24165): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 04:28:57] Arguments: --nthreads 8
[2025-11-27 04:28:57] Threads: 8
[2025-11-27 04:28:57] This job has been restarted, cleaning up previous attempt
[2025-11-27 04:28:57] Checking for CVMFS
[2025-11-27 04:28:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 04:28:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 04:28:57] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 04:28:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 04:28:57] 2.11.2.0 8318 119010 124692 153358 3 49 13089847 18432001 1 130560 0 85398568 99.973 5171453 31812 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 04:28:57] CVMFS is ok
[2025-11-27 04:28:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 04:28:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 04:28:57] Further information can be found at the LHC@home message board.
[2025-11-27 04:28:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 04:28:57] Checking for apptainer binary...
[2025-11-27 04:28:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 04:28:57] Running /usr/bin/apptainer --version
[2025-11-27 04:28:58] apptainer version 1.3.2-1.el7
[2025-11-27 04:28:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 04:28:59] c-206-28.aglt2.org
[2025-11-27 04:28:59] apptainer works
[2025-11-27 04:28:59] Set ATHENA_PROC_NUMBER=8
[2025-11-27 04:28:59] Set ATHENA_CORE_NUMBER=8
[2025-11-27 04:28:59] Starting ATLAS job with PandaID=6891571898
[2025-11-27 04:28:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 23:59:23]  *** The last 200 lines of the pilot log: ***
[2025-11-27 23:59:23] 2025-11-28 04:58:49,889 | INFO     | time since job start (70178s) is within the limit (172800.0s)
[2025-11-27 23:59:23] 2025-11-28 04:58:51,297 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-27 23:59:23] 2025-11-28 04:58:51,300 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 1684.75
[2025-11-27 23:59:23] 2025-11-28 04:58:51,303 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6891571898/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 23:59:23] 2025-11-28 04:58:51,303 | INFO     | extracted standard info from prmon json
[2025-11-27 23:59:23] 2025-11-28 04:58:51,303 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 23:59:23] 2025-11-28 04:58:51,303 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 23:59:23] 2025-11-28 04:58:51,318 | INFO     | fitting pss+swap vs Time
[2025-11-27 23:59:23] 2025-11-28 04:58:51,319 | INFO     | sum of square deviations: 471595694826.108
[2025-11-27 23:59:23] 2025-11-28 04:58:51,341 | INFO     | sum of deviations: 2399539432699.819
[2025-11-27 23:59:23] 2025-11-28 04:58:51,341 | INFO     | mean x: 1764270823.3347826
[2025-11-27 23:59:23] 2025-11-28 04:58:51,342 | INFO     | mean y: 2864184.5095652174
[2025-11-27 23:59:23] 2025-11-28 04:58:51,342 | INFO     | intersect: -8973972239.144783
[2025-11-27 23:59:23] 2025-11-28 04:58:51,343 | INFO     | chi2: 4.742947693843337
[2025-11-27 23:59:23] 2025-11-28 04:58:51,344 | INFO     | sum of square deviations: 465471416975.1086
[2025-11-27 23:59:23] 2025-11-28 04:58:51,366 | INFO     | sum of deviations: 2703028290902.611
[2025-11-27 23:59:23] 2025-11-28 04:58:51,366 | INFO     | mean x: 1764270670.838428
[2025-11-27 23:59:23] 2025-11-28 04:58:51,366 | INFO     | mean y: 2871736.5222707423
[2025-11-27 23:59:23] 2025-11-28 04:58:51,366 | INFO     | intersect: -10242383637.21643
[2025-11-27 23:59:23] 2025-11-28 04:58:51,367 | INFO     | chi2: 2.5569800122044084
[2025-11-27 23:59:23] 2025-11-28 04:58:51,367 | INFO     | current chi2=2.5569800122044084 (change=46.088800103708934 %)
[2025-11-27 23:59:23] 2025-11-28 04:58:51,368 | INFO     | sum of square deviations: 459400395936.5795
[2025-11-27 23:59:23] 2025-11-28 04:58:51,390 | INFO     | sum of deviations: 2760722208200.3955
[2025-11-27 23:59:23] 2025-11-28 04:58:51,390 | INFO     | mean x: 1764270518.3421052
[2025-11-27 23:59:23] 2025-11-28 04:58:51,390 | INFO     | mean y: 2873181.5605263156
[2025-11-27 23:59:23] 2025-11-28 04:58:51,390 | INFO     | intersect: -10599339712.336653
[2025-11-27 23:59:23] 2025-11-28 04:58:51,391 | INFO     | chi2: 2.326451362300132
[2025-11-27 23:59:23] 2025-11-28 04:58:51,392 | INFO     | current chi2=2.326451362300132 (change=9.01566100649861 %)
[2025-11-27 23:59:23] 2025-11-28 04:58:51,392 | INFO     | right removable region: 1139
[2025-11-27 23:59:23] 2025-11-28 04:58:51,393 | INFO     | sum of square deviations: 465470901281.7851
[2025-11-27 23:59:23] 2025-11-28 04:58:51,415 | INFO     | sum of deviations: 2117676444417.4934
[2025-11-27 23:59:23] 2025-11-28 04:58:51,415 | INFO     | mean x: 1764270975.8375547
[2025-11-27 23:59:23] 2025-11-28 04:58:51,415 | INFO     | mean y: 2871193.2768558953
[2025-11-27 23:59:23] 2025-11-28 04:58:51,415 | INFO     | intersect: -8023742450.695863
[2025-11-27 23:59:23] 2025-11-28 04:58:51,416 | INFO     | chi2: 2.774913413626323
[2025-11-27 23:59:23] 2025-11-28 04:58:51,416 | INFO     | current chi2=2.774913413626323 (change=41.49390647448323 %)
[2025-11-27 23:59:23] 2025-11-28 04:58:51,417 | INFO     | sum of square deviations: 459399504485.3018
[2025-11-27 23:59:23] 2025-11-28 04:58:51,439 | INFO     | sum of deviations: 2023990180926.8982
[2025-11-27 23:59:23] 2025-11-28 04:58:51,440 | INFO     | mean x: 1764271128.3385966
[2025-11-27 23:59:23] 2025-11-28 04:58:51,440 | INFO     | mean y: 2873546.1842105263
[2025-11-27 23:59:23] 2025-11-28 04:58:51,440 | INFO     | intersect: -7770028699.8703165
[2025-11-27 23:59:23] 2025-11-28 04:58:51,441 | INFO     | chi2: 2.6823394341493967
[2025-11-27 23:59:23] 2025-11-28 04:58:51,441 | INFO     | current chi2=2.6823394341493967 (change=3.336103354516874 %)
[2025-11-27 23:59:23] 2025-11-28 04:58:51,441 | INFO     | left removable region: 20
[2025-11-27 23:59:23] 2025-11-28 04:58:51,442 | INFO     | sum of square deviations: 434476910946.8685
[2025-11-27 23:59:23] 2025-11-28 04:58:51,468 | INFO     | sum of deviations: 2241775001979.074
[2025-11-27 23:59:23] 2025-11-28 04:58:51,469 | INFO     | mean x: 1764271097.847185
[2025-11-27 23:59:23] 2025-11-28 04:58:51,469 | INFO     | mean y: 2886203.070598749
[2025-11-27 23:59:23] 2025-11-28 04:58:51,469 | INFO     | intersect: -9100241590.87484
[2025-11-27 23:59:23] 2025-11-28 04:58:51,470 | INFO     | chi2: 0.18725949404043735
[2025-11-27 23:59:23] 2025-11-28 04:58:51,470 | INFO     | current memory leak: 5.16 B/s (using 1119 data points, chi2=0.19)
[2025-11-27 23:59:23] 2025-11-28 04:58:51,471 | INFO     | could have reported an average CPU frequency of 2552 MHz (42 samples)
[2025-11-27 23:59:23] 2025-11-28 04:58:51,471 | INFO     | ..............................
[2025-11-27 23:59:23] 2025-11-28 04:58:51,471 | INFO     | . Timing measurements:
[2025-11-27 23:59:23] 2025-11-28 04:58:51,471 | INFO     | . get job = 0 s
[2025-11-27 23:59:23] 2025-11-28 04:58:51,472 | INFO     | . initial setup = 1 s
[2025-11-27 23:59:23] 2025-11-28 04:58:51,472 | INFO     | . payload setup = 6 s
[2025-11-27 23:59:23] 2025-11-28 04:58:51,472 | INFO     | . stage-in = 0 s
[2025-11-27 23:59:23] 2025-11-28 04:58:51,472 | INFO     | . payload execution = 70141 s
[2025-11-27 23:59:23] 2025-11-28 04:58:51,472 | INFO     | . stage-out = 3 s
[2025-11-27 23:59:23] 2025-11-28 04:58:51,472 | INFO     | . log creation = 0 s
[2025-11-27 23:59:23] 2025-11-28 04:58:51,472 | INFO     | ..............................
[2025-11-27 23:59:23] 2025-11-28 04:58:51,840 | INFO     | 
[2025-11-27 23:59:23] 2025-11-28 04:58:51,840 | INFO     | job summary report
[2025-11-27 23:59:23] 2025-11-28 04:58:51,841 | INFO     | --------------------------------------------------
[2025-11-27 23:59:23] 2025-11-28 04:58:51,841 | INFO     | PanDA job id: 6891571898
[2025-11-27 23:59:23] 2025-11-28 04:58:51,841 | INFO     | task id: 47493068
[2025-11-27 23:59:23] 2025-11-28 04:58:51,841 | INFO     | errors: (none)
[2025-11-27 23:59:23] 2025-11-28 04:58:51,841 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 23:59:23] 2025-11-28 04:58:51,841 | INFO     | pilot state: finished 
[2025-11-27 23:59:23] 2025-11-28 04:58:51,842 | INFO     | transexitcode: 0
[2025-11-27 23:59:23] 2025-11-28 04:58:51,842 | INFO     | exeerrorcode: 0
[2025-11-27 23:59:23] 2025-11-28 04:58:51,842 | INFO     | exeerrordiag: 
[2025-11-27 23:59:23] 2025-11-28 04:58:51,842 | INFO     | exitcode: 0
[2025-11-27 23:59:23] 2025-11-28 04:58:51,842 | INFO     | exitmsg: OK
[2025-11-27 23:59:23] 2025-11-28 04:58:51,842 | INFO     | cpuconsumptiontime: 540659 s
[2025-11-27 23:59:23] 2025-11-28 04:58:51,843 | INFO     | nevents: 1000
[2025-11-27 23:59:23] 2025-11-28 04:58:51,843 | INFO     | neventsw: 0
[2025-11-27 23:59:23] 2025-11-28 04:58:51,843 | INFO     | pid: 22994
[2025-11-27 23:59:23] 2025-11-28 04:58:51,843 | INFO     | pgrp: 22994
[2025-11-27 23:59:23] 2025-11-28 04:58:51,843 | INFO     | corecount: 8
[2025-11-27 23:59:23] 2025-11-28 04:58:51,843 | INFO     | event service: False
[2025-11-27 23:59:23] 2025-11-28 04:58:51,843 | INFO     | sizes: {0: 2283475, 1: 2284331, 5: 2284593, 12: 2284649, 70152: 2341100, 70156: 2350094, 70158: 2350278, 70165: 2350524}
[2025-11-27 23:59:23] 2025-11-28 04:58:51,844 | INFO     | --------------------------------------------------
[2025-11-27 23:59:23] 2025-11-28 04:58:51,844 | INFO     | 
[2025-11-27 23:59:23] 2025-11-28 04:58:51,844 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-27 23:59:23] 2025-11-28 04:58:51,865 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 23:59:23] 2025-11-28 04:58:51,866 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 23:59:23] 2025-11-28 04:58:51,866 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 23:59:23] 2025-11-28 04:58:51,866 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 23:59:23] 2025-11-28 04:58:51,866 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 23:59:23] 2025-11-28 04:58:51,866 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 23:59:23] 2025-11-28 04:58:51,866 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 23:59:23] 2025-11-28 04:58:51,866 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 23:59:23] 2025-11-28 04:58:51,866 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 23:59:23] 2025-11-28 04:58:51,867 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 23:59:23] 2025-11-28 04:58:51,867 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 23:59:23] 2025-11-28 04:58:51,867 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 23:59:23] 2025-11-28 04:58:51,867 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 23:59:23] 2025-11-28 04:58:51,867 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 23:59:23] 2025-11-28 04:58:51,867 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 23:59:23] 2025-11-28 04:58:51,867 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 23:59:23] 2025-11-28 04:58:51,867 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 23:59:23] 2025-11-28 04:58:51,867 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 23:59:23] 2025-11-28 04:58:51,867 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 23:59:23] 2025-11-28 04:58:51,868 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 23:59:23] 2025-11-28 04:58:51,868 | INFO     | job 6891571898 has completed (purged errors)
[2025-11-27 23:59:23] 2025-11-28 04:58:51,868 | INFO     | overall cleanup function is called
[2025-11-27 23:59:23] 2025-11-28 04:58:52,880 | INFO     | --- collectZombieJob: --- 10, [22994]
[2025-11-27 23:59:23] 2025-11-28 04:58:52,881 | INFO     | zombie collector waiting for pid 22994
[2025-11-27 23:59:23] 2025-11-28 04:58:52,881 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 23:59:23] 2025-11-28 04:58:52,881 | INFO     | collected zombie processes
[2025-11-27 23:59:23] 2025-11-28 04:58:52,881 | INFO     | will attempt to kill all subprocesses of pid=22994
[2025-11-27 23:59:23] 2025-11-28 04:58:52,990 | INFO     | process IDs to be killed: [22994] (in reverse order)
[2025-11-27 23:59:23] 2025-11-28 04:58:53,041 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 23:59:23] 2025-11-28 04:58:53,042 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 23:59:23] 2025-11-28 04:58:53,045 | INFO     | did not find any defunct processes belonging to 22994
[2025-11-27 23:59:23] 2025-11-28 04:58:53,047 | INFO     | did not find any defunct processes belonging to 22994
[2025-11-27 23:59:23] 2025-11-28 04:58:53,049 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 23:59:23] 2025-11-28 04:58:53,049 | INFO     | ready for new job
[2025-11-27 23:59:23] 2025-11-28 04:58:53,049 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 23:59:23] 2025-11-28 04:58:53,053 | INFO     | ***************************************
[2025-11-27 23:59:23] 2025-11-28 04:58:53,053 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 23:59:23] 2025-11-28 04:58:53,053 | INFO     | ***************************************
[2025-11-27 23:59:23] 2025-11-28 04:58:53,053 | INFO     | 
[2025-11-27 23:59:23] 2025-11-28 04:58:53,054 | INFO     | architecture information:
[2025-11-27 23:59:23] 2025-11-28 04:58:53,055 | INFO     | executing command: cat /etc/os-release
[2025-11-27 23:59:23] 2025-11-28 04:58:53,067 | INFO     | cat /etc/os-release:
[2025-11-27 23:59:23] NAME="CentOS Linux"
[2025-11-27 23:59:23] VERSION="7 (Core)"
[2025-11-27 23:59:23] ID="centos"
[2025-11-27 23:59:23] ID_LIKE="rhel fedora"
[2025-11-27 23:59:23] VERSION_ID="7"
[2025-11-27 23:59:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 23:59:23] ANSI_COLOR="0;31"
[2025-11-27 23:59:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 23:59:23] HOME_URL="https://www.centos.org/"
[2025-11-27 23:59:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 23:59:23] 
[2025-11-27 23:59:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 23:59:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 23:59:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 23:59:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 23:59:23] 
[2025-11-27 23:59:23] 2025-11-28 04:58:53,067 | INFO     | ***************************************
[2025-11-27 23:59:23] 2025-11-28 04:58:53,570 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-27 23:59:23] 2025-11-28 04:58:53,586 | INFO     | sufficient remaining disk space (25085083648 B)
[2025-11-27 23:59:23] 2025-11-28 04:58:53,587 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 23:59:23] 2025-11-28 04:58:53,587 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 23:59:23] 2025-11-28 04:58:53,587 | INFO     | update_server=False
[2025-11-27 23:59:23] 2025-11-28 04:58:53,587 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 23:59:23] 2025-11-28 04:58:53,588 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 23:59:23] 2025-11-28 04:58:53,588 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 23:59:23] 2025-11-28 04:58:53,588 | INFO     | aborting loop
[2025-11-27 23:59:23] 2025-11-28 04:58:53,664 | INFO     | all payload control threads have been joined
[2025-11-27 23:59:23] 2025-11-28 04:58:54,101 | INFO     | all data control threads have been joined
[2025-11-27 23:59:23] 2025-11-28 04:58:54,482 | INFO     | all job control threads have been joined
[2025-11-27 23:59:23] 2025-11-28 04:58:54,593 | INFO     | [job] retrieve thread has finished
[2025-11-27 23:59:23] 2025-11-28 04:58:54,594 | INFO     | [job] job monitor thread has finished
[2025-11-27 23:59:23] 2025-11-28 04:58:54,669 | INFO     | [payload] control thread has finished
[2025-11-27 23:59:23] 2025-11-28 04:58:55,106 | INFO     | [data] control thread has finished
[2025-11-27 23:59:23] 2025-11-28 04:58:55,231 | INFO     | [job] validate thread has finished
[2025-11-27 23:59:23] 2025-11-28 04:58:55,247 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 23:59:23] 2025-11-28 04:58:55,474 | INFO     | [payload] failed_post thread has finished
[2025-11-27 23:59:23] 2025-11-28 04:58:55,487 | INFO     | [job] control thread has finished
[2025-11-27 23:59:23] 2025-11-28 04:58:55,518 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 23:59:23] 2025-11-28 04:58:55,593 | INFO     | [data] copytool_out thread has finished
[2025-11-27 23:59:23] 2025-11-28 04:58:55,655 | INFO     | [payload] validate_post thread has finished
[2025-11-27 23:59:23] 2025-11-28 04:58:55,849 | INFO     | [data] copytool_in thread has finished
[2025-11-27 23:59:23] 2025-11-28 04:58:56,003 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 23:59:23] 2025-11-28 04:58:56,052 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 23:59:23] 2025-11-28 04:58:56,558 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 23:59:23] 2025-11-28 04:58:57,560 | INFO     | [job] queue monitor thread has finished
[2025-11-27 23:59:23] 2025-11-28 04:58:59,523 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 23:59:23] 2025-11-28 04:59:03,864 | INFO     | job.realtimelogging is not enabled
[2025-11-27 23:59:23] 2025-11-28 04:59:04,866 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 23:59:23] 2025-11-28 04:59:07,362 | INFO     | [monitor] cgroup control has ended
[2025-11-27 23:59:23] 2025-11-28 04:59:07,504 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140413864134464)>', '<ExcThread(monitor, started 140413352539904)>']
[2025-11-27 23:59:23] 2025-11-28 04:59:12,529 | INFO     | all workflow threads have been joined
[2025-11-27 23:59:23] 2025-11-28 04:59:12,530 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 23:59:23] 2025-11-28 04:59:12,530 | INFO     | traces error code: 0
[2025-11-27 23:59:23] 2025-11-28 04:59:12,530 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 23:59:23] 2025-11-28 04:59:18,338 [wrapper] supervise_pilot (15 min periods counter: 79)
[2025-11-27 23:59:23] 2025-11-28 04:59:23,144 | INFO     | PID=2915 has CPU usage=6.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-27 23:59:23] 2025-11-28 04:59:23,144 | INFO     | .. there are 2 such processes running
[2025-11-27 23:59:23] 2025-11-28 04:59:23,144 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 23:59:23] 2025-11-28 04:59:23,145 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 23:59:23] 2025-11-28 04:59:23,145 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 23:59:23] 2025-11-28 04:59:23,145 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 23:59:23] 2025-11-28 04:59:23,145 | INFO     | [monitor] control thread has ended
[2025-11-27 23:59:23] 2025-11-28 04:59:23,241 [wrapper] ==== pilot stdout END ====
[2025-11-27 23:59:23] 2025-11-28 04:59:23,244 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 23:59:23] 2025-11-28 04:59:23,248 [wrapper] pilotpid: 2915
[2025-11-27 23:59:23] 2025-11-28 04:59:23,251 [wrapper] Pilot exit status: 0
[2025-11-27 23:59:23] 2025-11-28 04:59:23,263 [wrapper] pandaids: 6891571898 6891571898
[2025-11-27 23:59:23] 2025-11-28 04:59:23,297 [wrapper] cleanup supervisor_pilot 25519 2918
[2025-11-27 23:59:23] 2025-11-28 04:59:23,301 [wrapper] Test setup, not cleaning
[2025-11-27 23:59:23] 2025-11-28 04:59:23,304 [wrapper] apfmon messages muted
[2025-11-27 23:59:23] 2025-11-28 04:59:23,307 [wrapper] ==== wrapper stdout END ====
[2025-11-27 23:59:23] 2025-11-28 04:59:23,310 [wrapper] ==== wrapper stderr END ====
[2025-11-27 23:59:23]  *** Error codes and diagnostics ***
[2025-11-27 23:59:23]     "exeErrorCode": 0,
[2025-11-27 23:59:23]     "exeErrorDiag": "",
[2025-11-27 23:59:23]     "pilotErrorCode": 0,
[2025-11-27 23:59:23]     "pilotErrorDiag": "",
[2025-11-27 23:59:23]  *** Listing of results directory ***
[2025-11-27 23:59:23] total 1710200
[2025-11-27 23:59:23] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-27 23:59:23] -rw-r--r-- 1 boincer umatlas    576529 Nov 18 10:47 pilot3.tar.gz
[2025-11-27 23:59:23] -rwx------ 1 boincer umatlas     36292 Nov 18 11:03 runpilot2-wrapper.sh
[2025-11-27 23:59:23] -rw-r--r-- 1 boincer umatlas      5112 Nov 18 11:03 queuedata.json
[2025-11-27 23:59:23] -rw-r--r-- 1 boincer umatlas       100 Nov 27 03:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 23:59:23] -rwxr-xr-x 1 boincer umatlas      7986 Nov 27 03:04 run_atlas
[2025-11-27 23:59:23] -rw-r--r-- 1 boincer umatlas       105 Nov 27 03:04 job.xml
[2025-11-27 23:59:23] -rw-r--r-- 3 boincer umatlas 406675968 Nov 27 03:04 EVNT.47493065._000309.pool.root.1
[2025-11-27 23:59:23] -rw-r--r-- 3 boincer umatlas 406675968 Nov 27 03:04 ATLAS.root_0
[2025-11-27 23:59:23] -rw-r--r-- 2 boincer umatlas     15120 Nov 27 03:04 start_atlas.sh
[2025-11-27 23:59:23] drwxrwx--x 2 boincer umatlas      4096 Nov 27 03:04 shared
[2025-11-27 23:59:23] -rw-r--r-- 2 boincer umatlas    590098 Nov 27 03:04 input.tar.gz
[2025-11-27 23:59:23] -rw-r--r-- 1 boincer umatlas         0 Nov 27 03:04 boinc_lockfile
[2025-11-27 23:59:23] -rw-r--r-- 1 boincer umatlas      2772 Nov 27 04:28 pandaJob.out
[2025-11-27 23:59:23] -rw------- 1 boincer umatlas    991551 Nov 27 04:29 agis_schedconf.cvmfs.json
[2025-11-27 23:59:23] -rw-r--r-- 1 boincer umatlas       533 Nov 27 23:49 boinc_task_state.xml
[2025-11-27 23:59:23] -rw-r--r-- 1 boincer umatlas      5954 Nov 27 23:55 init_data.xml
[2025-11-27 23:59:23] -rw------- 1 boincer umatlas 909902338 Nov 27 23:58 HITS.47493068._003090.pool.root.1
[2025-11-27 23:59:23] -rw------- 1 boincer umatlas        96 Nov 27 23:58 pilot_heartbeat.json
[2025-11-27 23:59:23] -rw------- 1 boincer umatlas      1066 Nov 27 23:58 memory_monitor_summary.json
[2025-11-27 23:59:23] -rw------- 1 boincer umatlas   1516240 Nov 27 23:58 agis_ddmendpoints.agis.ALL.json
[2025-11-27 23:59:23] -rw------- 1 boincer umatlas   2321227 Nov 27 23:58 log.47493068._003090.job.log.tgz.1
[2025-11-27 23:59:23] -rw------- 1 boincer umatlas      8649 Nov 27 23:58 heartbeat.json
[2025-11-27 23:59:23] -rw-r--r-- 1 boincer umatlas      8192 Nov 27 23:59 boinc_mmap_file
[2025-11-27 23:59:23] -rw-r--r-- 1 boincer umatlas        29 Nov 27 23:59 wrapper_checkpoint.txt
[2025-11-27 23:59:23] -rw------- 1 boincer umatlas       819 Nov 27 23:59 pilotlog.txt
[2025-11-27 23:59:23] -rw------- 1 boincer umatlas   9710524 Nov 27 23:59 log.47493068._003090.job.log.1
[2025-11-27 23:59:23] -rw------- 1 boincer umatlas       353 Nov 27 23:59 output.list
[2025-11-27 23:59:23] -rw-r--r-- 1 boincer umatlas       620 Nov 27 23:59 runtime_log
[2025-11-27 23:59:23] -rw------- 1 boincer umatlas  12052480 Nov 27 23:59 result.tar.gz
[2025-11-27 23:59:23] -rw-r--r-- 1 boincer umatlas      8789 Nov 27 23:59 runtime_log.err
[2025-11-27 23:59:23] -rw------- 1 boincer umatlas       793 Nov 27 23:59 3y0NDmQMdf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmDRFKDmqErQOn.diag
[2025-11-27 23:59:23] -rw-r--r-- 1 boincer umatlas     23381 Nov 27 23:59 stderr.txt
[2025-11-27 23:59:23] HITS file was successfully produced:
[2025-11-27 23:59:23] -rw------- 1 boincer umatlas 909902338 Nov 27 23:58 shared/HITS.pool.root.1
[2025-11-27 23:59:23]  *** Contents of shared directory: ***
[2025-11-27 23:59:23] total 1298104
[2025-11-27 23:59:23] -rw-r--r-- 3 boincer umatlas 406675968 Nov 27 03:04 ATLAS.root_0
[2025-11-27 23:59:23] -rw-r--r-- 2 boincer umatlas     15120 Nov 27 03:04 start_atlas.sh
[2025-11-27 23:59:23] -rw-r--r-- 2 boincer umatlas    590098 Nov 27 03:04 input.tar.gz
[2025-11-27 23:59:23] -rw------- 1 boincer umatlas 909902338 Nov 27 23:58 HITS.pool.root.1
[2025-11-27 23:59:23] -rw------- 1 boincer umatlas  12052480 Nov 27 23:59 result.tar.gz
23:59:24 (24165): run_atlas exited; CPU time 539247.781662
23:59:24 (24165): called boinc_finish(0)

</stderr_txt>
]]>

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