Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:28:45 (2401322): wrapper (7.7.26015): starting
22:28:45 (2401322): wrapper: running run_atlas (--nthreads 12)
[2025-11-27 22:28:45] Arguments: --nthreads 12
[2025-11-27 22:28:45] Threads: 12
[2025-11-27 22:28:45] Checking for CVMFS
[2025-11-27 22:28:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 22:28:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 22:28:45] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 22:28:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 22:28:45] 2.13.3.0 4064 3214 199320 153385 0 89 40873194 46080001 7517 130560 0 13757800 99.911 4649442 23126 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-11-27 22:28:45] CVMFS is ok
[2025-11-27 22:28:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 22:28:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 22:28:45] Further information can be found at the LHC@home message board.
[2025-11-27 22:28:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 22:28:45] Checking for apptainer binary...
[2025-11-27 22:28:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 22:28:45] Running /usr/bin/apptainer --version
[2025-11-27 22:28:45] apptainer version 1.4.3-1.el9
[2025-11-27 22:28:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 22:28:45] mff2104.farm.particle.cz
[2025-11-27 22:28:45] apptainer works
[2025-11-27 22:28:45] Set ATHENA_PROC_NUMBER=12
[2025-11-27 22:28:45] Set ATHENA_CORE_NUMBER=12
[2025-11-27 22:28:45] Starting ATLAS job with PandaID=6896242862
[2025-11-27 22:28:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 03:59:37]  *** The last 200 lines of the pilot log: ***
[2025-11-28 03:59:37] 2025-11-28 02:58:44,941 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 03:59:37] 2025-11-28 02:58:45,332 | INFO     | time since job start (19787s) is within the limit (172800.0s)
[2025-11-28 03:59:37] 2025-11-28 02:58:45,605 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-28 03:59:37] 2025-11-28 02:58:45,620 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2737.068677083333
[2025-11-28 03:59:37] 2025-11-28 02:58:45,639 | INFO     | using path: /scratch/.boinc/slots/1/PanDA_Pilot-6896242862/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 03:59:37] 2025-11-28 02:58:45,640 | INFO     | extracted standard info from prmon json
[2025-11-28 03:59:37] 2025-11-28 02:58:45,640 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 03:59:37] 2025-11-28 02:58:45,640 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 03:59:37] 2025-11-28 02:58:45,646 | INFO     | fitting pss+swap vs Time
[2025-11-28 03:59:37] 2025-11-28 02:58:45,646 | INFO     | sum of square deviations: 10546510470.996908
[2025-11-28 03:59:37] 2025-11-28 02:58:45,649 | INFO     | sum of deviations: 213602838190.53394
[2025-11-28 03:59:37] 2025-11-28 02:58:45,649 | INFO     | mean x: 1764288821.4969137
[2025-11-28 03:59:37] 2025-11-28 02:58:45,650 | INFO     | mean y: 3475124.033950617
[2025-11-28 03:59:37] 2025-11-28 02:58:45,650 | INFO     | intersect: -35729396018.125984
[2025-11-28 03:59:37] 2025-11-28 02:58:45,650 | INFO     | chi2: 4.901416587463242
[2025-11-28 03:59:37] 2025-11-28 02:58:45,651 | INFO     | sum of square deviations: 10065837175.949823
[2025-11-28 03:59:37] 2025-11-28 02:58:45,653 | INFO     | sum of deviations: 324369043948.77124
[2025-11-28 03:59:37] 2025-11-28 02:58:45,653 | INFO     | mean x: 1764288669.0125391
[2025-11-28 03:59:37] 2025-11-28 02:58:45,653 | INFO     | mean y: 3510180.3072100314
[2025-11-28 03:59:37] 2025-11-28 02:58:45,654 | INFO     | intersect: -56850243642.03657
[2025-11-28 03:59:37] 2025-11-28 02:58:45,654 | INFO     | chi2: 2.429342737506626
[2025-11-28 03:59:37] 2025-11-28 02:58:45,654 | INFO     | current chi2=2.429342737506626 (change=50.43590573957013 %)
[2025-11-28 03:59:37] 2025-11-28 02:58:45,654 | INFO     | sum of square deviations: 9599904078.449013
[2025-11-28 03:59:37] 2025-11-28 02:58:45,657 | INFO     | sum of deviations: 326180988372.2006
[2025-11-28 03:59:37] 2025-11-28 02:58:45,657 | INFO     | mean x: 1764288516.512739
[2025-11-28 03:59:37] 2025-11-28 02:58:45,657 | INFO     | mean y: 3510737.8248407645
[2025-11-28 03:59:37] 2025-11-28 02:58:45,657 | INFO     | intersect: -59942647826.58703
[2025-11-28 03:59:37] 2025-11-28 02:58:45,658 | INFO     | chi2: 2.372365502622745
[2025-11-28 03:59:37] 2025-11-28 02:58:45,658 | INFO     | current chi2=2.372365502622745 (change=2.345376549970058 %)
[2025-11-28 03:59:37] 2025-11-28 02:58:45,658 | INFO     | right removable region: 313
[2025-11-28 03:59:37] 2025-11-28 02:58:45,659 | INFO     | sum of square deviations: 10065659666.971777
[2025-11-28 03:59:37] 2025-11-28 02:58:45,661 | INFO     | sum of deviations: 105949725896.20715
[2025-11-28 03:59:37] 2025-11-28 02:58:45,661 | INFO     | mean x: 1764288974.0094044
[2025-11-28 03:59:37] 2025-11-28 02:58:45,661 | INFO     | mean y: 3509141.9310344825
[2025-11-28 03:59:37] 2025-11-28 02:58:45,661 | INFO     | intersect: -18567149849.387024
[2025-11-28 03:59:37] 2025-11-28 02:58:45,662 | INFO     | chi2: 2.6533336119684687
[2025-11-28 03:59:37] 2025-11-28 02:58:45,662 | INFO     | current chi2=2.6533336119684687 (change=45.86598456545972 %)
[2025-11-28 03:59:37] 2025-11-28 02:58:45,662 | INFO     | sum of square deviations: 9599724434.47129
[2025-11-28 03:59:37] 2025-11-28 02:58:45,665 | INFO     | sum of deviations: 82173903184.96803
[2025-11-28 03:59:37] 2025-11-28 02:58:45,665 | INFO     | mean x: 1764289126.5095541
[2025-11-28 03:59:37] 2025-11-28 02:58:45,665 | INFO     | mean y: 3516907.8439490446
[2025-11-28 03:59:37] 2025-11-28 02:58:45,665 | INFO     | intersect: -15098846171.609665
[2025-11-28 03:59:37] 2025-11-28 02:58:45,666 | INFO     | chi2: 2.5967519834180277
[2025-11-28 03:59:37] 2025-11-28 02:58:45,666 | INFO     | current chi2=2.5967519834180277 (change=2.132473213892766 %)
[2025-11-28 03:59:37] 2025-11-28 02:58:45,666 | INFO     | left removable region: 20
[2025-11-28 03:59:37] 2025-11-28 02:58:45,666 | INFO     | sum of square deviations: 7799671921.781558
[2025-11-28 03:59:37] 2025-11-28 02:58:45,669 | INFO     | sum of deviations: 168159306707.75427
[2025-11-28 03:59:37] 2025-11-28 02:58:45,669 | INFO     | mean x: 1764289096.0273037
[2025-11-28 03:59:37] 2025-11-28 02:58:45,669 | INFO     | mean y: 3563950.0307167238
[2025-11-28 03:59:37] 2025-11-28 02:58:45,669 | INFO     | intersect: -38034142532.4024
[2025-11-28 03:59:37] 2025-11-28 02:58:45,670 | INFO     | chi2: 0.0210991312807631
[2025-11-28 03:59:37] 2025-11-28 02:58:45,670 | INFO     | current memory leak: 21.56 B/s (using 293 data points, chi2=0.02)
[2025-11-28 03:59:37] 2025-11-28 02:58:45,670 | INFO     | could have reported an average CPU frequency of 2725 MHz (14 samples)
[2025-11-28 03:59:37] 2025-11-28 02:58:45,671 | INFO     | ..............................
[2025-11-28 03:59:37] 2025-11-28 02:58:45,671 | INFO     | . Timing measurements:
[2025-11-28 03:59:37] 2025-11-28 02:58:45,671 | INFO     | . get job = 0 s
[2025-11-28 03:59:37] 2025-11-28 02:58:45,671 | INFO     | . initial setup = 1 s
[2025-11-28 03:59:37] 2025-11-28 02:58:45,671 | INFO     | . payload setup = 7 s
[2025-11-28 03:59:37] 2025-11-28 02:58:45,671 | INFO     | . stage-in = 0 s
[2025-11-28 03:59:37] 2025-11-28 02:58:45,671 | INFO     | . payload execution = 19748 s
[2025-11-28 03:59:37] 2025-11-28 02:58:45,671 | INFO     | . stage-out = 2 s
[2025-11-28 03:59:37] 2025-11-28 02:58:45,671 | INFO     | . log creation = 0 s
[2025-11-28 03:59:37] 2025-11-28 02:58:45,671 | INFO     | ..............................
[2025-11-28 03:59:37] 2025-11-28 02:58:46,076 | INFO     | 
[2025-11-28 03:59:37] 2025-11-28 02:58:46,076 | INFO     | job summary report
[2025-11-28 03:59:37] 2025-11-28 02:58:46,077 | INFO     | --------------------------------------------------
[2025-11-28 03:59:37] 2025-11-28 02:58:46,077 | INFO     | PanDA job id: 6896242862
[2025-11-28 03:59:37] 2025-11-28 02:58:46,077 | INFO     | task id: 47556173
[2025-11-28 03:59:37] 2025-11-28 02:58:46,077 | INFO     | errors: (none)
[2025-11-28 03:59:37] 2025-11-28 02:58:46,077 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 03:59:37] 2025-11-28 02:58:46,077 | INFO     | pilot state: finished 
[2025-11-28 03:59:37] 2025-11-28 02:58:46,077 | INFO     | transexitcode: 0
[2025-11-28 03:59:37] 2025-11-28 02:58:46,077 | INFO     | exeerrorcode: 0
[2025-11-28 03:59:37] 2025-11-28 02:58:46,077 | INFO     | exeerrordiag: 
[2025-11-28 03:59:37] 2025-11-28 02:58:46,077 | INFO     | exitcode: 0
[2025-11-28 03:59:37] 2025-11-28 02:58:46,077 | INFO     | exitmsg: OK
[2025-11-28 03:59:37] 2025-11-28 02:58:46,078 | INFO     | cpuconsumptiontime: 223835 s
[2025-11-28 03:59:37] 2025-11-28 02:58:46,078 | INFO     | nevents: 1000
[2025-11-28 03:59:37] 2025-11-28 02:58:46,078 | INFO     | neventsw: 0
[2025-11-28 03:59:37] 2025-11-28 02:58:46,078 | INFO     | pid: 2412865
[2025-11-28 03:59:37] 2025-11-28 02:58:46,078 | INFO     | pgrp: 2412865
[2025-11-28 03:59:37] 2025-11-28 02:58:46,078 | INFO     | corecount: 12
[2025-11-28 03:59:37] 2025-11-28 02:58:46,078 | INFO     | event service: False
[2025-11-28 03:59:37] 2025-11-28 02:58:46,078 | INFO     | sizes: {0: 2284136, 1: 2284335, 6: 2284597, 12: 2284625, 19759: 2318967, 19760: 2318966, 19762: 2328146, 19765: 2328202, 19770: 2328448}
[2025-11-28 03:59:37] 2025-11-28 02:58:46,078 | INFO     | --------------------------------------------------
[2025-11-28 03:59:37] 2025-11-28 02:58:46,078 | INFO     | 
[2025-11-28 03:59:37] 2025-11-28 02:58:46,078 | INFO     | executing command: ls -lF /scratch/.boinc/slots/1
[2025-11-28 03:59:37] 2025-11-28 02:58:46,105 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 03:59:37] 2025-11-28 02:58:46,106 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 03:59:37] 2025-11-28 02:58:46,106 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 03:59:37] 2025-11-28 02:58:46,106 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 03:59:37] 2025-11-28 02:58:46,106 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 03:59:37] 2025-11-28 02:58:46,106 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 03:59:37] 2025-11-28 02:58:46,106 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 03:59:37] 2025-11-28 02:58:46,106 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 03:59:37] 2025-11-28 02:58:46,106 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 03:59:37] 2025-11-28 02:58:46,106 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 03:59:37] 2025-11-28 02:58:46,107 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 03:59:37] 2025-11-28 02:58:46,107 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 03:59:37] 2025-11-28 02:58:46,107 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 03:59:37] 2025-11-28 02:58:46,107 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 03:59:37] 2025-11-28 02:58:46,107 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 03:59:37] 2025-11-28 02:58:46,107 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 03:59:37] 2025-11-28 02:58:46,107 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 03:59:37] 2025-11-28 02:58:46,107 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 03:59:37] 2025-11-28 02:58:46,107 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 03:59:37] 2025-11-28 02:58:46,107 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 03:59:37] 2025-11-28 02:58:46,108 | INFO     | job 6896242862 has completed (purged errors)
[2025-11-28 03:59:37] 2025-11-28 02:58:46,108 | INFO     | overall cleanup function is called
[2025-11-28 03:59:37] 2025-11-28 02:58:47,133 | INFO     | --- collectZombieJob: --- 10, [2412865]
[2025-11-28 03:59:37] 2025-11-28 02:58:47,133 | INFO     | zombie collector waiting for pid 2412865
[2025-11-28 03:59:37] 2025-11-28 02:58:47,133 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 03:59:37] 2025-11-28 02:58:47,133 | INFO     | collected zombie processes
[2025-11-28 03:59:37] 2025-11-28 02:58:47,133 | INFO     | will attempt to kill all subprocesses of pid=2412865
[2025-11-28 03:59:37] 2025-11-28 02:58:47,508 | INFO     | process IDs to be killed: [2412865] (in reverse order)
[2025-11-28 03:59:37] 2025-11-28 02:58:47,638 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 03:59:37] 2025-11-28 02:58:47,638 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 03:59:37] 2025-11-28 02:58:47,651 | INFO     | did not find any defunct processes belonging to 2412865
[2025-11-28 03:59:37] 2025-11-28 02:58:47,662 | INFO     | did not find any defunct processes belonging to 2412865
[2025-11-28 03:59:37] 2025-11-28 02:58:47,663 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 03:59:37] 2025-11-28 02:58:47,663 | INFO     | ready for new job
[2025-11-28 03:59:37] 2025-11-28 02:58:47,664 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 03:59:37] 2025-11-28 02:58:47,667 | INFO     | ***************************************
[2025-11-28 03:59:37] 2025-11-28 02:58:47,668 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 03:59:37] 2025-11-28 02:58:47,668 | INFO     | ***************************************
[2025-11-28 03:59:37] 2025-11-28 02:58:47,668 | INFO     | 
[2025-11-28 03:59:37] 2025-11-28 02:58:47,674 | INFO     | architecture information:
[2025-11-28 03:59:37] 2025-11-28 02:58:47,675 | INFO     | executing command: cat /etc/os-release
[2025-11-28 03:59:37] 2025-11-28 02:58:47,699 | INFO     | cat /etc/os-release:
[2025-11-28 03:59:37] NAME="CentOS Linux"
[2025-11-28 03:59:37] VERSION="7 (Core)"
[2025-11-28 03:59:37] ID="centos"
[2025-11-28 03:59:37] ID_LIKE="rhel fedora"
[2025-11-28 03:59:37] VERSION_ID="7"
[2025-11-28 03:59:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 03:59:37] ANSI_COLOR="0;31"
[2025-11-28 03:59:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 03:59:37] HOME_URL="https://www.centos.org/"
[2025-11-28 03:59:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 03:59:37] 
[2025-11-28 03:59:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 03:59:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 03:59:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 03:59:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 03:59:37] 
[2025-11-28 03:59:37] 2025-11-28 02:58:47,700 | INFO     | ***************************************
[2025-11-28 03:59:37] 2025-11-28 02:58:48,203 | INFO     | executing command: df -mP /scratch/.boinc/slots/1
[2025-11-28 03:59:37] 2025-11-28 02:58:48,228 | INFO     | sufficient remaining disk space (1673288220672 B)
[2025-11-28 03:59:37] 2025-11-28 02:58:48,272 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 03:59:37] 2025-11-28 02:58:48,273 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 03:59:37] 2025-11-28 02:58:48,273 | INFO     | update_server=False
[2025-11-28 03:59:37] 2025-11-28 02:58:48,273 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 03:59:37] 2025-11-28 02:58:48,273 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 03:59:37] 2025-11-28 02:58:48,449 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 03:59:37] 2025-11-28 02:58:48,450 | INFO     | aborting loop
[2025-11-28 03:59:37] 2025-11-28 02:58:48,505 | INFO     | all job control threads have been joined
[2025-11-28 03:59:37] 2025-11-28 02:58:48,552 | INFO     | all payload control threads have been joined
[2025-11-28 03:59:37] 2025-11-28 02:58:49,085 | INFO     | all data control threads have been joined
[2025-11-28 03:59:37] 2025-11-28 02:58:49,279 | INFO     | [job] retrieve thread has finished
[2025-11-28 03:59:37] 2025-11-28 02:58:49,317 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 03:59:37] 2025-11-28 02:58:49,318 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 03:59:37] 2025-11-28 02:58:49,456 | INFO     | [job] job monitor thread has finished
[2025-11-28 03:59:37] 2025-11-28 02:58:49,513 | INFO     | [job] control thread has finished
[2025-11-28 03:59:37] 2025-11-28 02:58:49,557 | INFO     | [payload] control thread has finished
[2025-11-28 03:59:37] 2025-11-28 02:58:49,576 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 03:59:37] 2025-11-28 02:58:49,619 | INFO     | [data] copytool_in thread has finished
[2025-11-28 03:59:37] 2025-11-28 02:58:49,701 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 03:59:37] 2025-11-28 02:58:50,052 | INFO     | [job] validate thread has finished
[2025-11-28 03:59:37] 2025-11-28 02:58:50,090 | INFO     | [data] control thread has finished
[2025-11-28 03:59:37] 2025-11-28 02:58:50,278 | INFO     | [data] copytool_out thread has finished
[2025-11-28 03:59:37] 2025-11-28 02:58:50,320 | INFO     | [payload] validate_post thread has finished
[2025-11-28 03:59:37] 2025-11-28 02:58:50,389 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 03:59:37] 2025-11-28 02:58:50,423 | INFO     | [payload] failed_post thread has finished
[2025-11-28 03:59:37] 2025-11-28 02:58:50,780 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 03:59:37] 2025-11-28 02:58:51,786 | INFO     | [job] queue monitor thread has finished
[2025-11-28 03:59:37] 2025-11-28 02:58:54,396 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 03:59:37] 2025-11-28 02:59:00,073 [wrapper] supervise_pilot (15 min periods counter: 23)
[2025-11-28 03:59:37] 2025-11-28 02:59:18,863 | INFO     | PID=2405533 has CPU usage=8.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 03:59:37] 2025-11-28 02:59:18,863 | INFO     | .. there are 9 such processes running
[2025-11-28 03:59:37] 2025-11-28 02:59:18,864 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 03:59:37] 2025-11-28 02:59:18,864 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 03:59:37] 2025-11-28 02:59:18,865 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 03:59:37] 2025-11-28 02:59:30,952 | INFO     | [monitor] cgroup control has ended
[2025-11-28 03:59:37] 2025-11-28 02:59:32,521 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139869877024576)>', '<ExcThread(monitor, started 139869527451392)>']
[2025-11-28 03:59:37] 2025-11-28 02:59:32,940 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 03:59:37] 2025-11-28 02:59:32,940 | INFO     | [monitor] control thread has ended
[2025-11-28 03:59:37] 2025-11-28 02:59:37,546 | INFO     | all workflow threads have been joined
[2025-11-28 03:59:37] 2025-11-28 02:59:37,547 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 03:59:37] 2025-11-28 02:59:37,547 | INFO     | traces error code: 0
[2025-11-28 03:59:37] 2025-11-28 02:59:37,548 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 03:59:37] 2025-11-28 02:59:37,725 [wrapper] ==== pilot stdout END ====
[2025-11-28 03:59:37] 2025-11-28 02:59:37,729 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 03:59:37] 2025-11-28 02:59:37,733 [wrapper] pilotpid: 2405533
[2025-11-28 03:59:37] 2025-11-28 02:59:37,737 [wrapper] Pilot exit status: 0
[2025-11-28 03:59:37] 2025-11-28 02:59:37,750 [wrapper] pandaids: 6896242862
[2025-11-28 03:59:37] 2025-11-28 02:59:37,839 [wrapper] cleanup supervisor_pilot 2903217 2405534
[2025-11-28 03:59:37] 2025-11-28 02:59:37,843 [wrapper] Test setup, not cleaning
[2025-11-28 03:59:37] 2025-11-28 02:59:37,847 [wrapper] apfmon messages muted
[2025-11-28 03:59:37] 2025-11-28 02:59:37,850 [wrapper] ==== wrapper stdout END ====
[2025-11-28 03:59:37] 2025-11-28 02:59:37,854 [wrapper] ==== wrapper stderr END ====
[2025-11-28 03:59:37]  *** Error codes and diagnostics ***
[2025-11-28 03:59:37]     "exeErrorCode": 0,
[2025-11-28 03:59:37]     "exeErrorDiag": "",
[2025-11-28 03:59:37]     "pilotErrorCode": 0,
[2025-11-28 03:59:37]     "pilotErrorDiag": "",
[2025-11-28 03:59:37]  *** Listing of results directory ***
[2025-11-28 03:59:37] total 1313868
[2025-11-28 03:59:37] -rw-r--r-- 1 boinc boinc    576529 Nov 24 21:01 pilot3.tar.gz
[2025-11-28 03:59:37] -rw-r--r-- 1 boinc boinc      5112 Nov 24 21:13 queuedata.json
[2025-11-28 03:59:37] -rwx------ 1 boinc boinc     36292 Nov 24 21:13 runpilot2-wrapper.sh
[2025-11-28 03:59:37] -rw-r--r-- 1 boinc boinc       100 Nov 27 22:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 03:59:37] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 22:28 run_atlas
[2025-11-28 03:59:37] -rw-r--r-- 1 boinc boinc       105 Nov 27 22:28 job.xml
[2025-11-28 03:59:37] -rw-r--r-- 2 boinc boinc 409643833 Nov 27 22:28 EVNT.47483658._003052.pool.root.1
[2025-11-28 03:59:37] -rw-r--r-- 1 boinc boinc      6665 Nov 27 22:28 init_data.xml
[2025-11-28 03:59:37] -rw-r--r-- 2 boinc boinc     15847 Nov 27 22:28 start_atlas.sh
[2025-11-28 03:59:37] drwxrwx--x 2 boinc boinc      4096 Nov 27 22:28 shared
[2025-11-28 03:59:37] -rw-r--r-- 2 boinc boinc    590101 Nov 27 22:28 input.tar.gz
[2025-11-28 03:59:37] -rw-r--r-- 1 boinc boinc         0 Nov 27 22:28 boinc_lockfile
[2025-11-28 03:59:37] -rw-r--r-- 1 boinc boinc      2781 Nov 27 22:28 pandaJob.out
[2025-11-28 03:59:37] -rw------- 1 boinc boinc    991540 Nov 27 22:28 agis_schedconf.cvmfs.json
[2025-11-28 03:59:37] drwx------ 5 boinc boinc      4096 Nov 27 22:28 pilot3
[2025-11-28 03:59:37] -rw-r--r-- 1 boinc boinc       533 Nov 28 03:50 boinc_task_state.xml
[2025-11-28 03:59:37] -rw------- 1 boinc boinc 922175698 Nov 28 03:58 HITS.47556173._000341.pool.root.1
[2025-11-28 03:59:37] -rw------- 1 boinc boinc      1034 Nov 28 03:58 memory_monitor_summary.json
[2025-11-28 03:59:37] -rw------- 1 boinc boinc   1516240 Nov 28 03:58 agis_ddmendpoints.agis.ALL.json
[2025-11-28 03:59:37] -rw------- 1 boinc boinc   2076288 Nov 28 03:58 log.47556173._000341.job.log.tgz.1
[2025-11-28 03:59:37] -rw------- 1 boinc boinc        95 Nov 28 03:58 pilot_heartbeat.json
[2025-11-28 03:59:37] -rw------- 1 boinc boinc      8595 Nov 28 03:58 heartbeat.json
[2025-11-28 03:59:37] -rw-r--r-- 1 boinc boinc      8192 Nov 28 03:59 boinc_mmap_file
[2025-11-28 03:59:37] -rw-r--r-- 1 boinc boinc        29 Nov 28 03:59 wrapper_checkpoint.txt
[2025-11-28 03:59:37] -rw------- 1 boinc boinc      4826 Nov 28 03:59 pilotlog.txt
[2025-11-28 03:59:37] -rw------- 1 boinc boinc   2754050 Nov 28 03:59 log.47556173._000341.job.log.1
[2025-11-28 03:59:37] -rw------- 1 boinc boinc       353 Nov 28 03:59 output.list
[2025-11-28 03:59:37] -rw-r--r-- 1 boinc boinc       620 Nov 28 03:59 runtime_log
[2025-11-28 03:59:37] -rw------- 1 boinc boinc   4853760 Nov 28 03:59 result.tar.gz
[2025-11-28 03:59:37] -rw------- 1 boinc boinc       671 Nov 28 03:59 v5PODmL7rh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmWuLKDmGXztSo.diag
[2025-11-28 03:59:37] -rw-r--r-- 1 boinc boinc      8881 Nov 28 03:59 runtime_log.err
[2025-11-28 03:59:37] -rw-r--r-- 1 boinc boinc     21356 Nov 28 03:59 stderr.txt
[2025-11-28 03:59:37] HITS file was successfully produced:
[2025-11-28 03:59:37] -rw------- 1 boinc boinc 922175698 Nov 28 03:58 shared/HITS.pool.root.1
[2025-11-28 03:59:37]  *** Contents of shared directory: ***
[2025-11-28 03:59:37] total 1305952
[2025-11-28 03:59:37] -rw-r--r-- 2 boinc boinc 409643833 Nov 27 22:28 ATLAS.root_0
[2025-11-28 03:59:37] -rw-r--r-- 2 boinc boinc     15847 Nov 27 22:28 start_atlas.sh
[2025-11-28 03:59:37] -rw-r--r-- 2 boinc boinc    590101 Nov 27 22:28 input.tar.gz
[2025-11-28 03:59:37] -rw------- 1 boinc boinc 922175698 Nov 28 03:58 HITS.pool.root.1
[2025-11-28 03:59:37] -rw------- 1 boinc boinc   4853760 Nov 28 03:59 result.tar.gz
03:59:39 (2401322): run_atlas exited; CPU time 223661.038560
03:59:39 (2401322): called boinc_finish(0)

</stderr_txt>
]]>

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