Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:12:01 (293422): wrapper (7.7.26015): starting
10:12:01 (293422): wrapper: running run_atlas (--nthreads 4)
[2025-12-01 10:12:01] Arguments: --nthreads 4
[2025-12-01 10:12:01] Threads: 4
[2025-12-01 10:12:01] Checking for CVMFS
[2025-12-01 10:12:01] No cvmfs_config command found, will try listing directly
[2025-12-01 10:12:01] CVMFS is ok
[2025-12-01 10:12:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-01 10:12:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-01 10:12:01] Further information can be found at the LHC@home message board.
[2025-12-01 10:12:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 10:12:01] Checking for apptainer binary...
[2025-12-01 10:12:01] which: no apptainer in ((null))
[2025-12-01 10:12:01] apptainer is not installed, using version from CVMFS
[2025-12-01 10:12:01] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 10:12:01] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot60/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut01.grid.cesnet.cz
[2025-12-01 10:12:01] apptainer works
[2025-12-01 10:12:01] Set ATHENA_PROC_NUMBER=4
[2025-12-01 10:12:01] Set ATHENA_CORE_NUMBER=4
[2025-12-01 10:12:01] Starting ATLAS job with PandaID=6895368134
[2025-12-01 10:12:01] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot60/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 04:21:27]  *** The last 200 lines of the pilot log: ***
[2025-12-02 04:21:27] 2025-12-02 03:16:05,164 | INFO     | monitor loop #4626: job 0:6895368134 is in state 'finished'
[2025-12-02 04:21:27] 2025-12-02 03:16:05,164 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 04:21:27] 2025-12-02 03:16:05,842 | INFO     | time since job start (65033s) is within the limit (172800.0s)
[2025-12-02 04:21:27] 2025-12-02 03:16:05,951 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-02 04:21:27] 2025-12-02 03:16:05,967 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 2546.341906250001
[2025-12-02 04:21:27] 2025-12-02 03:16:05,984 | INFO     | using path: /scratch/boinc/var/slot60/slots/0/PanDA_Pilot-6895368134/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 04:21:27] 2025-12-02 03:16:05,986 | INFO     | extracted standard info from prmon json
[2025-12-02 04:21:27] 2025-12-02 03:16:05,986 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 04:21:27] 2025-12-02 03:16:05,986 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 04:21:27] 2025-12-02 03:16:06,015 | INFO     | fitting pss+swap vs Time
[2025-12-02 04:21:27] 2025-12-02 03:16:06,017 | INFO     | sum of square deviations: 375620892342.46497
[2025-12-02 04:21:27] 2025-12-02 03:16:06,050 | INFO     | sum of deviations: 1010558339695.1664
[2025-12-02 04:21:27] 2025-12-02 03:16:06,051 | INFO     | mean x: 1764612842.5056286
[2025-12-02 04:21:27] 2025-12-02 03:16:06,051 | INFO     | mean y: 2279689.138836773
[2025-12-02 04:21:27] 2025-12-02 03:16:06,051 | INFO     | intersect: -4745177815.704685
[2025-12-02 04:21:27] 2025-12-02 03:16:06,054 | INFO     | chi2: 4.956991871818102
[2025-12-02 04:21:27] 2025-12-02 03:16:06,056 | INFO     | sum of square deviations: 370360172279.96625
[2025-12-02 04:21:27] 2025-12-02 03:16:06,084 | INFO     | sum of deviations: 1257116007318.7805
[2025-12-02 04:21:27] 2025-12-02 03:16:06,084 | INFO     | mean x: 1764612690.005655
[2025-12-02 04:21:27] 2025-12-02 03:16:06,084 | INFO     | mean y: 2286831.8699340243
[2025-12-02 04:21:27] 2025-12-02 03:16:06,085 | INFO     | intersect: -5987349812.015915
[2025-12-02 04:21:27] 2025-12-02 03:16:06,086 | INFO     | chi2: 2.3615563808126177
[2025-12-02 04:21:27] 2025-12-02 03:16:06,086 | INFO     | current chi2=2.3615563808126177 (change=52.35908305118004 %)
[2025-12-02 04:21:27] 2025-12-02 03:16:06,088 | INFO     | sum of square deviations: 365148801979.9661
[2025-12-02 04:21:27] 2025-12-02 03:16:06,115 | INFO     | sum of deviations: 1336649403450.3538
[2025-12-02 04:21:27] 2025-12-02 03:16:06,116 | INFO     | mean x: 1764612537.5056818
[2025-12-02 04:21:27] 2025-12-02 03:16:06,116 | INFO     | mean y: 2289159.1079545454
[2025-12-02 04:21:27] 2025-12-02 03:16:06,116 | INFO     | intersect: -6457182384.516041
[2025-12-02 04:21:27] 2025-12-02 03:16:06,118 | INFO     | chi2: 2.04771114231045
[2025-12-02 04:21:27] 2025-12-02 03:16:06,119 | INFO     | current chi2=2.04771114231045 (change=13.289762677365024 %)
[2025-12-02 04:21:27] 2025-12-02 03:16:06,119 | INFO     | right removable region: 1055
[2025-12-02 04:21:27] 2025-12-02 03:16:06,121 | INFO     | sum of square deviations: 370360168619.96625
[2025-12-02 04:21:27] 2025-12-02 03:16:06,153 | INFO     | sum of deviations: 807956932945.4385
[2025-12-02 04:21:27] 2025-12-02 03:16:06,153 | INFO     | mean x: 1764612995.005655
[2025-12-02 04:21:27] 2025-12-02 03:16:06,153 | INFO     | mean y: 2285554.0933081997
[2025-12-02 04:21:27] 2025-12-02 03:16:06,153 | INFO     | intersect: -3847295000.405802
[2025-12-02 04:21:27] 2025-12-02 03:16:06,155 | INFO     | chi2: 3.1067639091713657
[2025-12-02 04:21:27] 2025-12-02 03:16:06,155 | INFO     | current chi2=3.1067639091713657 (change=37.32562026510078 %)
[2025-12-02 04:21:27] 2025-12-02 03:16:06,157 | INFO     | sum of square deviations: 365148794659.9662
[2025-12-02 04:21:27] 2025-12-02 03:16:06,186 | INFO     | sum of deviations: 768165552818.7212
[2025-12-02 04:21:27] 2025-12-02 03:16:06,186 | INFO     | mean x: 1764613147.5056818
[2025-12-02 04:21:27] 2025-12-02 03:16:06,186 | INFO     | mean y: 2286718.1297348486
[2025-12-02 04:21:27] 2025-12-02 03:16:06,186 | INFO     | intersect: -3709939787.30668
[2025-12-02 04:21:27] 2025-12-02 03:16:06,188 | INFO     | chi2: 3.078055222441492
[2025-12-02 04:21:27] 2025-12-02 03:16:06,189 | INFO     | current chi2=3.078055222441492 (change=0.9240704337115522 %)
[2025-12-02 04:21:27] 2025-12-02 03:16:06,189 | INFO     | left removable region: 20
[2025-12-02 04:21:27] 2025-12-02 03:16:06,190 | INFO     | sum of square deviations: 343794683015.9652
[2025-12-02 04:21:27] 2025-12-02 03:16:06,218 | INFO     | sum of deviations: 1049900703827.5533
[2025-12-02 04:21:27] 2025-12-02 03:16:06,219 | INFO     | mean x: 1764613117.0057971
[2025-12-02 04:21:27] 2025-12-02 03:16:06,219 | INFO     | mean y: 2298608.741062802
[2025-12-02 04:21:27] 2025-12-02 03:16:06,219 | INFO     | intersect: -5386582153.68098
[2025-12-02 04:21:27] 2025-12-02 03:16:06,221 | INFO     | chi2: 0.08066697450562647
[2025-12-02 04:21:27] 2025-12-02 03:16:06,222 | INFO     | current memory leak: 3.05 B/s (using 1035 data points, chi2=0.08)
[2025-12-02 04:21:27] 2025-12-02 03:16:06,223 | INFO     | could have reported an average CPU frequency of 2542 MHz (39 samples)
[2025-12-02 04:21:27] 2025-12-02 03:16:06,223 | INFO     | ..............................
[2025-12-02 04:21:27] 2025-12-02 03:16:06,224 | INFO     | . Timing measurements:
[2025-12-02 04:21:27] 2025-12-02 03:16:06,224 | INFO     | . get job = 0 s
[2025-12-02 04:21:27] 2025-12-02 03:16:06,224 | INFO     | . initial setup = 1 s
[2025-12-02 04:21:27] 2025-12-02 03:16:06,224 | INFO     | . payload setup = 6 s
[2025-12-02 04:21:27] 2025-12-02 03:16:06,224 | INFO     | . stage-in = 0 s
[2025-12-02 04:21:27] 2025-12-02 03:16:06,224 | INFO     | . payload execution = 64994 s
[2025-12-02 04:21:27] 2025-12-02 03:16:06,225 | INFO     | . stage-out = 2 s
[2025-12-02 04:21:27] 2025-12-02 03:16:06,225 | INFO     | . log creation = 0 s
[2025-12-02 04:21:27] 2025-12-02 03:16:06,225 | INFO     | ..............................
[2025-12-02 04:21:27] 2025-12-02 03:16:06,360 | INFO     | 
[2025-12-02 04:21:27] 2025-12-02 03:16:06,360 | INFO     | job summary report
[2025-12-02 04:21:27] 2025-12-02 03:16:06,360 | INFO     | --------------------------------------------------
[2025-12-02 04:21:27] 2025-12-02 03:16:06,361 | INFO     | PanDA job id: 6895368134
[2025-12-02 04:21:27] 2025-12-02 03:16:06,361 | INFO     | task id: 47556137
[2025-12-02 04:21:27] 2025-12-02 03:16:06,361 | INFO     | errors: (none)
[2025-12-02 04:21:27] 2025-12-02 03:16:06,361 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 04:21:27] 2025-12-02 03:16:06,361 | INFO     | pilot state: finished 
[2025-12-02 04:21:27] 2025-12-02 03:16:06,361 | INFO     | transexitcode: 0
[2025-12-02 04:21:27] 2025-12-02 03:16:06,361 | INFO     | exeerrorcode: 0
[2025-12-02 04:21:27] 2025-12-02 03:16:06,361 | INFO     | exeerrordiag: 
[2025-12-02 04:21:27] 2025-12-02 03:16:06,361 | INFO     | exitcode: 0
[2025-12-02 04:21:27] 2025-12-02 03:16:06,361 | INFO     | exitmsg: OK
[2025-12-02 04:21:27] 2025-12-02 03:16:06,361 | INFO     | cpuconsumptiontime: 255278 s
[2025-12-02 04:21:27] 2025-12-02 03:16:06,361 | INFO     | nevents: 1000
[2025-12-02 04:21:27] 2025-12-02 03:16:06,361 | INFO     | neventsw: 0
[2025-12-02 04:21:27] 2025-12-02 03:16:06,361 | INFO     | pid: 304225
[2025-12-02 04:21:27] 2025-12-02 03:16:06,362 | INFO     | pgrp: 304225
[2025-12-02 04:21:27] 2025-12-02 03:16:06,362 | INFO     | corecount: 4
[2025-12-02 04:21:27] 2025-12-02 03:16:06,362 | INFO     | event service: False
[2025-12-02 04:21:27] 2025-12-02 03:16:06,362 | INFO     | sizes: {0: 2284325, 5: 2284587, 11: 2284643, 65005: 2339487, 65009: 2348503, 65011: 2348559, 65018: 2348933}
[2025-12-02 04:21:27] 2025-12-02 03:16:06,362 | INFO     | --------------------------------------------------
[2025-12-02 04:21:27] 2025-12-02 03:16:06,362 | INFO     | 
[2025-12-02 04:21:27] 2025-12-02 03:16:06,362 | INFO     | executing command: ls -lF /scratch/boinc/var/slot60/slots/0
[2025-12-02 04:21:27] 2025-12-02 03:16:06,383 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 04:21:27] 2025-12-02 03:16:06,384 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 04:21:27] 2025-12-02 03:16:06,384 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 04:21:27] 2025-12-02 03:16:06,384 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 04:21:27] 2025-12-02 03:16:06,384 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 04:21:27] 2025-12-02 03:16:06,384 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 04:21:27] 2025-12-02 03:16:06,384 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 04:21:27] 2025-12-02 03:16:06,384 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 04:21:27] 2025-12-02 03:16:06,384 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 04:21:27] 2025-12-02 03:16:06,385 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 04:21:27] 2025-12-02 03:16:06,385 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 04:21:27] 2025-12-02 03:16:06,385 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 04:21:27] 2025-12-02 03:16:06,385 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 04:21:27] 2025-12-02 03:16:06,385 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 04:21:27] 2025-12-02 03:16:06,385 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 04:21:27] 2025-12-02 03:16:06,385 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 04:21:27] 2025-12-02 03:16:06,385 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 04:21:27] 2025-12-02 03:16:06,385 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 04:21:27] 2025-12-02 03:16:06,385 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 04:21:27] 2025-12-02 03:16:06,385 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 04:21:27] 2025-12-02 03:16:06,386 | INFO     | job 6895368134 has completed (purged errors)
[2025-12-02 04:21:27] 2025-12-02 03:16:06,386 | INFO     | overall cleanup function is called
[2025-12-02 04:21:27] 2025-12-02 03:16:07,404 | INFO     | --- collectZombieJob: --- 10, [304225]
[2025-12-02 04:21:27] 2025-12-02 03:16:07,404 | INFO     | zombie collector waiting for pid 304225
[2025-12-02 04:21:27] 2025-12-02 03:16:07,404 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 04:21:27] 2025-12-02 03:16:07,404 | INFO     | collected zombie processes
[2025-12-02 04:21:27] 2025-12-02 03:16:07,404 | INFO     | will attempt to kill all subprocesses of pid=304225
[2025-12-02 04:21:27] 2025-12-02 03:16:07,766 | INFO     | process IDs to be killed: [304225] (in reverse order)
[2025-12-02 04:21:27] 2025-12-02 03:16:07,895 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 04:21:27] 2025-12-02 03:16:07,895 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 04:21:27] 2025-12-02 03:16:07,911 | INFO     | did not find any defunct processes belonging to 304225
[2025-12-02 04:21:27] 2025-12-02 03:16:07,926 | INFO     | did not find any defunct processes belonging to 304225
[2025-12-02 04:21:27] 2025-12-02 03:16:07,928 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 04:21:27] 2025-12-02 03:16:07,928 | INFO     | ready for new job
[2025-12-02 04:21:27] 2025-12-02 03:16:07,928 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 04:21:27] 2025-12-02 03:16:07,934 | INFO     | ***************************************
[2025-12-02 04:21:27] 2025-12-02 03:16:07,934 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 04:21:27] 2025-12-02 03:16:07,934 | INFO     | ***************************************
[2025-12-02 04:21:27] 2025-12-02 03:16:07,934 | INFO     | 
[2025-12-02 04:21:27] 2025-12-02 03:16:07,939 | INFO     | architecture information:
[2025-12-02 04:21:27] 2025-12-02 03:16:07,939 | INFO     | executing command: cat /etc/os-release
[2025-12-02 04:21:27] 2025-12-02 03:16:07,955 | INFO     | cat /etc/os-release:
[2025-12-02 04:21:27] NAME="CentOS Linux"
[2025-12-02 04:21:27] VERSION="7 (Core)"
[2025-12-02 04:21:27] ID="centos"
[2025-12-02 04:21:27] ID_LIKE="rhel fedora"
[2025-12-02 04:21:27] VERSION_ID="7"
[2025-12-02 04:21:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 04:21:27] ANSI_COLOR="0;31"
[2025-12-02 04:21:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 04:21:27] HOME_URL="https://www.centos.org/"
[2025-12-02 04:21:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 04:21:27] 
[2025-12-02 04:21:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 04:21:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 04:21:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 04:21:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 04:21:27] 
[2025-12-02 04:21:27] 2025-12-02 03:16:07,956 | INFO     | ***************************************
[2025-12-02 04:21:27] 2025-12-02 03:16:08,459 | INFO     | executing command: df -mP /scratch/boinc/var/slot60/slots/0
[2025-12-02 04:21:27] 2025-12-02 03:16:08,475 | INFO     | sufficient remaining disk space (575610552320 B)
[2025-12-02 04:21:27] 2025-12-02 03:16:08,475 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 04:21:27] 2025-12-02 03:16:08,475 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 04:21:27] 2025-12-02 03:16:08,476 | INFO     | update_server=False
[2025-12-02 04:21:27] 2025-12-02 03:16:08,476 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 04:21:27] 2025-12-02 03:16:08,678 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 04:21:27] 2025-12-02 03:16:08,678 | INFO     | aborting loop
[2025-12-02 04:21:27] 2025-12-02 03:16:09,039 | INFO     | all data control threads have been joined
[2025-12-02 04:21:27] 2025-12-02 03:16:09,265 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 04:21:27] 2025-12-02 03:16:09,415 | INFO     | all payload control threads have been joined
[2025-12-02 04:21:27] 2025-12-02 03:16:09,419 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 04:21:27] 2025-12-02 03:16:09,438 | INFO     | all job control threads have been joined
[2025-12-02 04:21:27] 2025-12-02 03:16:09,481 | INFO     | [job] retrieve thread has finished
[2025-12-02 04:21:27] 2025-12-02 03:16:09,634 | INFO     | [payload] validate_post thread has finished
[2025-12-02 04:21:27] 2025-12-02 03:16:09,683 | INFO     | [job] job monitor thread has finished
[2025-12-02 04:21:27] 2025-12-02 03:16:09,731 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 04:21:27] 2025-12-02 03:16:10,044 | INFO     | [data] control thread has finished
[2025-12-02 04:21:27] 2025-12-02 03:16:10,053 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 04:21:27] 2025-12-02 03:16:10,219 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 04:21:27] 2025-12-02 03:16:10,249 | INFO     | [data] copytool_in thread has finished
[2025-12-02 04:21:27] 2025-12-02 03:16:10,280 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 04:21:27] 2025-12-02 03:16:10,420 | INFO     | [payload] control thread has finished
[2025-12-02 04:21:27] 2025-12-02 03:16:10,443 | INFO     | [job] control thread has finished
[2025-12-02 04:21:27] 2025-12-02 03:16:10,494 | INFO     | [payload] failed_post thread has finished
[2025-12-02 04:21:27] 2025-12-02 03:16:10,541 | INFO     | [job] validate thread has finished
[2025-12-02 04:21:27] 2025-12-02 03:16:11,367 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 04:21:27] 2025-12-02 03:16:11,424 | INFO     | [data] copytool_out thread has finished
[2025-12-02 04:21:27] 2025-12-02 03:16:12,372 | INFO     | [job] queue monitor thread has finished
[2025-12-02 04:21:27] 2025-12-02 03:16:13,271 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 04:21:27] 2025-12-02 03:16:39,442 | INFO     | PID=297292 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-02 04:21:27] 2025-12-02 03:16:39,442 | INFO     | .. there are 4 such processes running
[2025-12-02 04:21:27] 2025-12-02 03:16:39,443 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 04:21:27] 2025-12-02 03:16:39,443 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 04:21:27] 2025-12-02 03:16:39,443 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 04:21:27] 2025-12-02 03:16:59,072 | INFO     | [monitor] cgroup control has ended
[2025-12-02 04:21:27] 2025-12-02 03:17:00,967 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22708632508224)>', '<ExcThread(monitor, started 22708395935488)>']
[2025-12-02 04:21:27] 2025-12-02 03:17:01,550 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 04:21:27] 2025-12-02 03:17:01,550 | INFO     | [monitor] control thread has ended
[2025-12-02 04:21:27] 2025-12-02 03:17:05,992 | INFO     | all workflow threads have been joined
[2025-12-02 04:21:27] 2025-12-02 03:17:05,992 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 04:21:27] 2025-12-02 03:17:05,992 | INFO     | traces error code: 0
[2025-12-02 04:21:27] 2025-12-02 03:17:05,993 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 04:21:27] 2025-12-02 03:17:06,141 [wrapper] ==== pilot stdout END ====
[2025-12-02 04:21:27] 2025-12-02 03:17:06,144 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 04:21:27] 2025-12-02 03:17:06,147 [wrapper] pilotpid: 297292
[2025-12-02 04:21:27] 2025-12-02 03:17:06,149 [wrapper] Pilot exit status: 0
[2025-12-02 04:21:27] 2025-12-02 03:17:06,160 [wrapper] pandaids: 6895368134
[2025-12-02 04:21:27] 2025-12-02 03:17:06,244 [wrapper] cleanup supervisor_pilot 1573919 297293
[2025-12-02 04:21:27] 2025-12-02 03:17:06,247 [wrapper] Test setup, not cleaning
[2025-12-02 04:21:27] 2025-12-02 03:17:06,250 [wrapper] apfmon messages muted
[2025-12-02 04:21:27] 2025-12-02 03:17:06,253 [wrapper] ==== wrapper stdout END ====
[2025-12-02 04:21:27] 2025-12-02 03:17:06,255 [wrapper] ==== wrapper stderr END ====
[2025-12-02 04:21:27]  *** Error codes and diagnostics ***
[2025-12-02 04:21:27]     "exeErrorCode": 0,
[2025-12-02 04:21:27]     "exeErrorDiag": "",
[2025-12-02 04:21:27]     "pilotErrorCode": 0,
[2025-12-02 04:21:27]     "pilotErrorDiag": "",
[2025-12-02 04:21:27]  *** Listing of results directory ***
[2025-12-02 04:21:27] total 1320560
[2025-12-02 04:21:27] -rw-r--r-- 1 boinc boinc    576529 Nov 23 20:15 pilot3.tar.gz
[2025-12-02 04:21:27] -rw-r--r-- 1 boinc boinc      5112 Nov 23 20:27 queuedata.json
[2025-12-02 04:21:27] -rwx------ 1 boinc boinc     36292 Nov 23 20:27 runpilot2-wrapper.sh
[2025-12-02 04:21:27] -rw-r--r-- 1 boinc boinc       100 Dec  1 10:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 04:21:27] -rwxr-xr-x 1 boinc boinc      7986 Dec  1 10:11 run_atlas
[2025-12-02 04:21:27] -rw-r--r-- 1 boinc boinc       105 Dec  1 10:11 job.xml
[2025-12-02 04:21:27] -rw-r--r-- 2 boinc boinc 407664356 Dec  1 10:12 EVNT.47483658._000865.pool.root.1
[2025-12-02 04:21:27] -rw-r--r-- 1 boinc boinc      6634 Dec  1 10:12 init_data.xml
[2025-12-02 04:21:27] -rw-r--r-- 2 boinc boinc     15847 Dec  1 10:12 start_atlas.sh
[2025-12-02 04:21:27] drwxrwx--x 2 boinc boinc      4096 Dec  1 10:12 shared
[2025-12-02 04:21:27] -rw-r--r-- 2 boinc boinc    590107 Dec  1 10:12 input.tar.gz
[2025-12-02 04:21:27] -rw-r--r-- 1 boinc boinc         0 Dec  1 10:12 boinc_lockfile
[2025-12-02 04:21:27] -rw-r--r-- 1 boinc boinc      2785 Dec  1 10:12 pandaJob.out
[2025-12-02 04:21:27] -rw------- 1 boinc boinc    992513 Dec  1 10:12 agis_schedconf.cvmfs.json
[2025-12-02 04:21:27] drwx------ 5 boinc boinc      4096 Dec  1 10:12 pilot3
[2025-12-02 04:21:27] -rw-r--r-- 1 boinc boinc       531 Dec  2 04:04 boinc_task_state.xml
[2025-12-02 04:21:27] -rw------- 1 boinc boinc 918931055 Dec  2 04:15 HITS.47556137._008517.pool.root.1
[2025-12-02 04:21:27] -rw------- 1 boinc boinc      1056 Dec  2 04:15 memory_monitor_summary.json
[2025-12-02 04:21:27] -rw------- 1 boinc boinc   1516240 Dec  2 04:15 agis_ddmendpoints.agis.ALL.json
[2025-12-02 04:21:27] -rw------- 1 boinc boinc   1795533 Dec  2 04:15 log.47556137._008517.job.log.tgz.1
[2025-12-02 04:21:27] -rw------- 1 boinc boinc      8659 Dec  2 04:16 heartbeat.json
[2025-12-02 04:21:27] -rw------- 1 boinc boinc        95 Dec  2 04:16 pilot_heartbeat.json
[2025-12-02 04:21:27] -rw------- 1 boinc boinc      4832 Dec  2 04:17 pilotlog.txt
[2025-12-02 04:21:27] -rw------- 1 boinc boinc   9072733 Dec  2 04:17 log.47556137._008517.job.log.1
[2025-12-02 04:21:27] -rw------- 1 boinc boinc       353 Dec  2 04:17 output.list
[2025-12-02 04:21:27] -rw-r--r-- 1 boinc boinc       620 Dec  2 04:17 runtime_log
[2025-12-02 04:21:27] -rw------- 1 boinc boinc  10885120 Dec  2 04:17 result.tar.gz
[2025-12-02 04:21:27] -rw-r--r-- 1 boinc boinc      9206 Dec  2 04:17 runtime_log.err
[2025-12-02 04:21:27] -rw------- 1 boinc boinc       674 Dec  2 04:17 ByhLDmavUh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmzhIKDmBZtFFm.diag
[2025-12-02 04:21:27] -rw-r--r-- 1 boinc boinc        28 Dec  2 04:21 wrapper_checkpoint.txt
[2025-12-02 04:21:27] -rw-r--r-- 1 boinc boinc      8192 Dec  2 04:21 boinc_mmap_file
[2025-12-02 04:21:27] -rw-r--r-- 1 boinc boinc     21097 Dec  2 04:21 stderr.txt
[2025-12-02 04:21:27] HITS file was successfully produced:
[2025-12-02 04:21:27] -rw------- 1 boinc boinc 918931055 Dec  2 04:15 shared/HITS.pool.root.1
[2025-12-02 04:21:27]  *** Contents of shared directory: ***
[2025-12-02 04:21:27] total 1306744
[2025-12-02 04:21:27] -rw-r--r-- 2 boinc boinc 407664356 Dec  1 10:12 ATLAS.root_0
[2025-12-02 04:21:27] -rw-r--r-- 2 boinc boinc     15847 Dec  1 10:12 start_atlas.sh
[2025-12-02 04:21:27] -rw-r--r-- 2 boinc boinc    590107 Dec  1 10:12 input.tar.gz
[2025-12-02 04:21:27] -rw------- 1 boinc boinc 918931055 Dec  2 04:15 HITS.pool.root.1
[2025-12-02 04:21:27] -rw------- 1 boinc boinc  10885120 Dec  2 04:17 result.tar.gz
04:21:29 (293422): run_atlas exited; CPU time 257992.436687
04:21:29 (293422): called boinc_finish(0)

</stderr_txt>
]]>

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