Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:57:12 (3336201): wrapper (7.7.26015): starting
08:57:12 (3336201): wrapper: running run_atlas (--nthreads 3)
[2025-11-27 08:57:12] Arguments: --nthreads 3
[2025-11-27 08:57:12] Threads: 3
[2025-11-27 08:57:12] Checking for CVMFS
[2025-11-27 08:57:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 08:57:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 08:57:12] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 08:57:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 08:57:13] 2.9.2.0 3252557 18 50740 153353 1 88 35931359 36864000 0 130560 0 250425 100.000 2 222 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-27 08:57:13] CVMFS is ok
[2025-11-27 08:57:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 08:57:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 08:57:13] Further information can be found at the LHC@home message board.
[2025-11-27 08:57:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 08:57:13] Checking for apptainer binary...
[2025-11-27 08:57:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 08:57:13] Running /usr/bin/apptainer --version
[2025-11-27 08:57:13] apptainer version 1.4.1-1.1
[2025-11-27 08:57:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 08:57:13] thA335
[2025-11-27 08:57:13] apptainer works
[2025-11-27 08:57:13] Set ATHENA_PROC_NUMBER=3
[2025-11-27 08:57:13] Set ATHENA_CORE_NUMBER=3
[2025-11-27 08:57:13] Starting ATLAS job with PandaID=6897510714
[2025-11-27 08:57:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 09:01:32]  *** The last 200 lines of the pilot log: ***
[2025-11-27 09:01:32] 2025-11-27 08:00:44,578 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 09:01:32] 2025-11-27 08:00:44,578 | INFO     | update_server=False
[2025-11-27 09:01:32] 2025-11-27 08:00:44,578 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 09:01:32] 2025-11-27 08:00:44,578 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 09:01:32] 2025-11-27 08:00:44,578 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 09:01:32] 2025-11-27 08:00:44,578 | INFO     | aborting loop
[2025-11-27 09:01:32] 2025-11-27 08:00:44,752 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 09:01:32] 2025-11-27 08:00:44,888 | INFO     | all job control threads have been joined
[2025-11-27 09:01:32] 2025-11-27 08:00:44,981 | INFO     | all data control threads have been joined
[2025-11-27 09:01:32] 2025-11-27 08:00:45,474 | INFO     | all payload control threads have been joined
[2025-11-27 09:01:32] 2025-11-27 08:00:45,583 | INFO     | [job] retrieve thread has finished
[2025-11-27 09:01:32] 2025-11-27 08:00:45,584 | INFO     | [job] queue monitor thread has finished
[2025-11-27 09:01:32] 2025-11-27 08:00:45,585 | INFO     | [job] job monitor thread has finished
[2025-11-27 09:01:32] 2025-11-27 08:00:45,641 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 09:01:32] 2025-11-27 08:00:45,642 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 09:01:32] 2025-11-27 08:00:45,894 | INFO     | [job] control thread has finished
[2025-11-27 09:01:32] 2025-11-27 08:00:45,986 | INFO     | [data] control thread has finished
[2025-11-27 09:01:32] 2025-11-27 08:00:46,048 | INFO     | [data] copytool_in thread has finished
[2025-11-27 09:01:32] 2025-11-27 08:00:46,298 | INFO     | [payload] validate_post thread has finished
[2025-11-27 09:01:32] 2025-11-27 08:00:46,374 | INFO     | [job] validate thread has finished
[2025-11-27 09:01:32] 2025-11-27 08:00:46,465 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 09:01:32] 2025-11-27 08:00:46,480 | INFO     | [payload] control thread has finished
[2025-11-27 09:01:32] 2025-11-27 08:00:46,522 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 09:01:32] 2025-11-27 08:00:46,758 | INFO     | [data] copytool_out thread has finished
[2025-11-27 09:01:32] 2025-11-27 08:00:46,844 | INFO     | [payload] failed_post thread has finished
[2025-11-27 09:01:32] 2025-11-27 08:00:47,046 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 09:01:32] 2025-11-27 08:00:51,053 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 09:01:32] 2025-11-27 08:01:14,708 | INFO     | PID=3339934 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 09:01:32] 2025-11-27 08:01:14,708 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 09:01:32] 2025-11-27 08:01:14,708 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 09:01:32] 2025-11-27 08:01:14,708 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 09:01:32] 2025-11-27 08:01:25,132 | INFO     | [monitor] cgroup control has ended
[2025-11-27 09:01:32] 2025-11-27 08:01:26,906 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139825047140160)>', '<ExcThread(monitor, started 139824203822848)>']
[2025-11-27 09:01:32] 2025-11-27 08:01:27,776 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 09:01:32] 2025-11-27 08:01:27,777 | INFO     | [monitor] control thread has ended
[2025-11-27 09:01:32] 2025-11-27 08:01:31,932 | INFO     | all workflow threads have been joined
[2025-11-27 09:01:32] 2025-11-27 08:01:31,932 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 09:01:32] 2025-11-27 08:01:31,933 | INFO     | traces error code: 0
[2025-11-27 09:01:32] 2025-11-27 08:01:31,933 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 09:01:32] 2025-11-27 08:01:31,986 [wrapper] ==== pilot stdout END ====
[2025-11-27 09:01:32] 2025-11-27 08:01:31,989 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 09:01:32] 2025-11-27 08:01:31,992 [wrapper] pilotpid: 3339934
[2025-11-27 09:01:32] 2025-11-27 08:01:31,995 [wrapper] Pilot exit status: 0
[2025-11-27 09:01:32] 2025-11-27 08:01:32,002 [wrapper] pandaids: 6897510714
[2025-11-27 09:01:32] 2025-11-27 08:01:32,019 [wrapper] cleanup supervisor_pilot 3339940 3339935
[2025-11-27 09:01:32] 2025-11-27 08:01:32,022 [wrapper] Test setup, not cleaning
[2025-11-27 09:01:32] 2025-11-27 08:01:32,025 [wrapper] apfmon messages muted
[2025-11-27 09:01:32] 2025-11-27 08:01:32,027 [wrapper] ==== wrapper stdout END ====
[2025-11-27 09:01:32] 2025-11-27 08:01:32,030 [wrapper] ==== wrapper stderr END ====
[2025-11-27 09:01:32]  *** Error codes and diagnostics ***
[2025-11-27 09:01:32]     "exeErrorCode": 65,
[2025-11-27 09:01:32]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-27 09:01:32]     "pilotErrorCode": 1305,
[2025-11-27 09:01:32]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-27 09:01:32]  *** Listing of results directory ***
[2025-11-27 09:01:32] total 406200
[2025-11-27 09:01:32] -rw-r--r-- 1 boinc boinc    576529 Nov 25 17:48 pilot3.tar.gz
[2025-11-27 09:01:32] -rwx------ 1 boinc boinc     36292 Nov 25 18:01 runpilot2-wrapper.sh
[2025-11-27 09:01:32] -rw-r--r-- 1 boinc boinc      5112 Nov 25 18:02 queuedata.json
[2025-11-27 09:01:32] -rw-r--r-- 1 boinc boinc       100 Nov 27 08:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 09:01:32] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 08:57 run_atlas
[2025-11-27 09:01:32] -rw-r--r-- 1 boinc boinc       105 Nov 27 08:57 job.xml
[2025-11-27 09:01:32] -rw-r--r-- 2 boinc boinc 411754204 Nov 27 08:57 EVNT.47483658._002295.pool.root.1
[2025-11-27 09:01:32] -rw-r--r-- 2 boinc boinc    590108 Nov 27 08:57 input.tar.gz
[2025-11-27 09:01:32] -rw-r--r-- 2 boinc boinc     15847 Nov 27 08:57 start_atlas.sh
[2025-11-27 09:01:32] drwxrwx--x 2 boinc boinc      4096 Nov 27 08:57 shared
[2025-11-27 09:01:32] -rw-r--r-- 1 boinc boinc         0 Nov 27 08:57 boinc_setup_complete
[2025-11-27 09:01:32] -rw-r--r-- 1 boinc boinc      6196 Nov 27 08:57 init_data.xml
[2025-11-27 09:01:32] -rw-r--r-- 1 boinc boinc         0 Nov 27 08:57 boinc_lockfile
[2025-11-27 09:01:32] -rw-r--r-- 1 boinc boinc      2786 Nov 27 08:57 pandaJob.out
[2025-11-27 09:01:32] -rw------- 1 boinc boinc    991570 Nov 27 08:57 agis_schedconf.cvmfs.json
[2025-11-27 09:01:32] -rw------- 1 boinc boinc   1516240 Nov 27 08:57 agis_ddmendpoints.agis.ALL.json
[2025-11-27 09:01:32] drwx------ 5 boinc boinc      4096 Nov 27 08:57 pilot3
[2025-11-27 09:01:32] -rw-r--r-- 1 boinc boinc       524 Nov 27 08:58 boinc_task_state.xml
[2025-11-27 09:01:32] -rw------- 1 boinc boinc       954 Nov 27 08:58 memory_monitor_summary.json
[2025-11-27 09:01:32] -rw------- 1 boinc boinc     56081 Nov 27 08:58 log.47556161._002786.job.log.tgz.1
[2025-11-27 09:01:32] -rw------- 1 boinc boinc        95 Nov 27 09:00 pilot_heartbeat.json
[2025-11-27 09:01:32] -rw------- 1 boinc boinc      8402 Nov 27 09:00 heartbeat.json
[2025-11-27 09:01:32] -rw-r--r-- 1 boinc boinc        23 Nov 27 09:01 wrapper_checkpoint.txt
[2025-11-27 09:01:32] -rw-r--r-- 1 boinc boinc      8192 Nov 27 09:01 boinc_mmap_file
[2025-11-27 09:01:32] -rw------- 1 boinc boinc      4752 Nov 27 09:01 pilotlog.txt
[2025-11-27 09:01:32] -rw------- 1 boinc boinc     93741 Nov 27 09:01 log.47556161._002786.job.log.1
[2025-11-27 09:01:32] -rw------- 1 boinc boinc       186 Nov 27 09:01 output.list
[2025-11-27 09:01:32] -rw-r--r-- 1 boinc boinc       620 Nov 27 09:01 runtime_log
[2025-11-27 09:01:32] -rw------- 1 boinc boinc    174080 Nov 27 09:01 result.tar.gz
[2025-11-27 09:01:32] -rw-r--r-- 1 boinc boinc      8744 Nov 27 09:01 runtime_log.err
[2025-11-27 09:01:32] -rw------- 1 boinc boinc       649 Nov 27 09:01 UdxLDmJbBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmmgJKDmtivlsm.diag
[2025-11-27 09:01:32] -rw-r--r-- 1 boinc boinc      7886 Nov 27 09:01 stderr.txt
[2025-11-27 09:01:32] No HITS result produced
[2025-11-27 09:01:32]  *** Contents of shared directory: ***
[2025-11-27 09:01:32] total 402876
[2025-11-27 09:01:32] -rw-r--r-- 2 boinc boinc 411754204 Nov 27 08:57 ATLAS.root_0
[2025-11-27 09:01:32] -rw-r--r-- 2 boinc boinc    590108 Nov 27 08:57 input.tar.gz
[2025-11-27 09:01:32] -rw-r--r-- 2 boinc boinc     15847 Nov 27 08:57 start_atlas.sh
[2025-11-27 09:01:32] -rw------- 1 boinc boinc    174080 Nov 27 09:01 result.tar.gz
09:01:33 (3336201): run_atlas exited; CPU time 32.017328
09:01:33 (3336201): called boinc_finish(0)

</stderr_txt>
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