Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:33:04 (3502799): wrapper (7.7.26015): starting
09:33:04 (3502799): wrapper: running run_atlas (--nthreads 3)
[2025-11-27 09:33:04] Arguments: --nthreads 3
[2025-11-27 09:33:04] Threads: 3
[2025-11-27 09:33:04] Checking for CVMFS
[2025-11-27 09:33:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 09:33:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 09:33:04] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 09:33:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 09:33:04] 2.9.2.0 3252557 54 60108 153356 2 88 35947675 36864001 0 130560 0 751281 99.999 3954 19194 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-27 09:33:04] CVMFS is ok
[2025-11-27 09:33:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 09:33:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 09:33:04] Further information can be found at the LHC@home message board.
[2025-11-27 09:33:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 09:33:05] Checking for apptainer binary...
[2025-11-27 09:33:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 09:33:05] Running /usr/bin/apptainer --version
[2025-11-27 09:33:05] apptainer version 1.4.1-1.1
[2025-11-27 09:33:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 09:33:05] thA335
[2025-11-27 09:33:05] apptainer works
[2025-11-27 09:33:05] Set ATHENA_PROC_NUMBER=3
[2025-11-27 09:33:05] Set ATHENA_CORE_NUMBER=3
[2025-11-27 09:33:05] Starting ATLAS job with PandaID=6891584729
[2025-11-27 09:33:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 09:37:23]  *** The last 200 lines of the pilot log: ***
[2025-11-27 09:37:23] 2025-11-27 08:36:36,076 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 09:37:23] 2025-11-27 08:36:36,076 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 09:37:23] 2025-11-27 08:36:36,076 | INFO     | aborting loop
[2025-11-27 09:37:23] 2025-11-27 08:36:36,253 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 09:37:23] 2025-11-27 08:36:36,274 | INFO     | all job control threads have been joined
[2025-11-27 09:37:23] 2025-11-27 08:36:36,384 | INFO     | all data control threads have been joined
[2025-11-27 09:37:23] 2025-11-27 08:36:36,844 | INFO     | all payload control threads have been joined
[2025-11-27 09:37:23] 2025-11-27 08:36:37,081 | INFO     | [job] queue monitor thread has finished
[2025-11-27 09:37:23] 2025-11-27 08:36:37,082 | INFO     | [job] job monitor thread has finished
[2025-11-27 09:37:23] 2025-11-27 08:36:37,083 | INFO     | [job] retrieve thread has finished
[2025-11-27 09:37:23] 2025-11-27 08:36:37,280 | INFO     | [job] control thread has finished
[2025-11-27 09:37:23] 2025-11-27 08:36:37,389 | INFO     | [data] copytool_in thread has finished
[2025-11-27 09:37:23] 2025-11-27 08:36:37,390 | INFO     | [data] control thread has finished
[2025-11-27 09:37:23] 2025-11-27 08:36:37,691 | INFO     | [payload] validate_post thread has finished
[2025-11-27 09:37:23] 2025-11-27 08:36:37,755 | INFO     | [job] validate thread has finished
[2025-11-27 09:37:23] 2025-11-27 08:36:37,834 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 09:37:23] 2025-11-27 08:36:37,850 | INFO     | [payload] control thread has finished
[2025-11-27 09:37:23] 2025-11-27 08:36:37,853 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 09:37:23] 2025-11-27 08:36:37,905 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 09:37:23] 2025-11-27 08:36:38,075 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 09:37:23] 2025-11-27 08:36:38,259 | INFO     | [data] copytool_out thread has finished
[2025-11-27 09:37:23] 2025-11-27 08:36:38,445 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 09:37:23] 2025-11-27 08:36:38,538 | INFO     | [payload] failed_post thread has finished
[2025-11-27 09:37:23] 2025-11-27 08:36:42,451 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 09:37:23] 2025-11-27 08:37:16,511 | INFO     | [monitor] cgroup control has ended
[2025-11-27 09:37:23] 2025-11-27 08:37:18,300 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140596116174656)>', '<ExcThread(monitor, started 140595343386368)>']
[2025-11-27 09:37:23] 2025-11-27 08:37:19,303 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 09:37:23] 2025-11-27 08:37:19,303 | INFO     | [monitor] control thread has ended
[2025-11-27 09:37:23] 2025-11-27 08:37:23,325 | INFO     | all workflow threads have been joined
[2025-11-27 09:37:23] 2025-11-27 08:37:23,326 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 09:37:23] 2025-11-27 08:37:23,326 | INFO     | traces error code: 0
[2025-11-27 09:37:23] 2025-11-27 08:37:23,327 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 09:37:23] 2025-11-27 08:37:23,370 [wrapper] ==== pilot stdout END ====
[2025-11-27 09:37:23] 2025-11-27 08:37:23,373 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 09:37:23] 2025-11-27 08:37:23,376 [wrapper] pilotpid: 3506598
[2025-11-27 09:37:23] 2025-11-27 08:37:23,379 [wrapper] Pilot exit status: 0
[2025-11-27 09:37:23] 2025-11-27 08:37:23,386 [wrapper] pandaids: 6891584729
[2025-11-27 09:37:23] 2025-11-27 08:37:23,402 [wrapper] cleanup supervisor_pilot 3506604 3506599
[2025-11-27 09:37:23] 2025-11-27 08:37:23,405 [wrapper] Test setup, not cleaning
[2025-11-27 09:37:23] 2025-11-27 08:37:23,408 [wrapper] apfmon messages muted
[2025-11-27 09:37:23] 2025-11-27 08:37:23,411 [wrapper] ==== wrapper stdout END ====
[2025-11-27 09:37:23] 2025-11-27 08:37:23,413 [wrapper] ==== wrapper stderr END ====
[2025-11-27 09:37:23]  *** Error codes and diagnostics ***
[2025-11-27 09:37:23]     "exeErrorCode": 65,
[2025-11-27 09:37:23]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-27 09:37:23]     "pilotErrorCode": 1305,
[2025-11-27 09:37:23]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-27 09:37:23]  *** Listing of results directory ***
[2025-11-27 09:37:23] total 404320
[2025-11-27 09:37:23] -rw-r--r-- 1 boinc boinc    576529 Nov 18 17:45 pilot3.tar.gz
[2025-11-27 09:37:23] -rwx------ 1 boinc boinc     36292 Nov 18 18:21 runpilot2-wrapper.sh
[2025-11-27 09:37:23] -rw-r--r-- 1 boinc boinc      5112 Nov 18 18:21 queuedata.json
[2025-11-27 09:37:23] -rw-r--r-- 1 boinc boinc       100 Nov 27 09:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 09:37:23] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 09:33 run_atlas
[2025-11-27 09:37:23] -rw-r--r-- 1 boinc boinc       105 Nov 27 09:33 job.xml
[2025-11-27 09:37:23] -rw-r--r-- 2 boinc boinc 409823490 Nov 27 09:33 EVNT.47493065._000470.pool.root.1
[2025-11-27 09:37:23] -rw-r--r-- 2 boinc boinc    590097 Nov 27 09:33 input.tar.gz
[2025-11-27 09:37:23] -rw-r--r-- 2 boinc boinc     15120 Nov 27 09:33 start_atlas.sh
[2025-11-27 09:37:23] drwxrwx--x 2 boinc boinc      4096 Nov 27 09:33 shared
[2025-11-27 09:37:23] -rw-r--r-- 1 boinc boinc         0 Nov 27 09:33 boinc_setup_complete
[2025-11-27 09:37:23] -rw-r--r-- 1 boinc boinc      6196 Nov 27 09:33 init_data.xml
[2025-11-27 09:37:23] -rw-r--r-- 1 boinc boinc         0 Nov 27 09:33 boinc_lockfile
[2025-11-27 09:37:23] -rw-r--r-- 1 boinc boinc      2772 Nov 27 09:33 pandaJob.out
[2025-11-27 09:37:23] -rw------- 1 boinc boinc    991573 Nov 27 09:33 agis_schedconf.cvmfs.json
[2025-11-27 09:37:23] -rw------- 1 boinc boinc   1516240 Nov 27 09:33 agis_ddmendpoints.agis.ALL.json
[2025-11-27 09:37:23] drwx------ 5 boinc boinc      4096 Nov 27 09:33 pilot3
[2025-11-27 09:37:23] -rw-r--r-- 1 boinc boinc       523 Nov 27 09:34 boinc_task_state.xml
[2025-11-27 09:37:23] -rw------- 1 boinc boinc       951 Nov 27 09:34 memory_monitor_summary.json
[2025-11-27 09:37:23] -rw------- 1 boinc boinc     56101 Nov 27 09:34 log.47493068._004693.job.log.tgz.1
[2025-11-27 09:37:23] -rw------- 1 boinc boinc        95 Nov 27 09:36 pilot_heartbeat.json
[2025-11-27 09:37:23] -rw------- 1 boinc boinc      8412 Nov 27 09:36 heartbeat.json
[2025-11-27 09:37:23] -rw-r--r-- 1 boinc boinc      8192 Nov 27 09:37 boinc_mmap_file
[2025-11-27 09:37:23] -rw-r--r-- 1 boinc boinc        23 Nov 27 09:37 wrapper_checkpoint.txt
[2025-11-27 09:37:23] -rw------- 1 boinc boinc      4556 Nov 27 09:37 pilotlog.txt
[2025-11-27 09:37:23] -rw------- 1 boinc boinc     94214 Nov 27 09:37 log.47493068._004693.job.log.1
[2025-11-27 09:37:23] -rw------- 1 boinc boinc       186 Nov 27 09:37 output.list
[2025-11-27 09:37:23] -rw-r--r-- 1 boinc boinc       620 Nov 27 09:37 runtime_log
[2025-11-27 09:37:23] -rw------- 1 boinc boinc    174080 Nov 27 09:37 result.tar.gz
[2025-11-27 09:37:23] -rw-r--r-- 1 boinc boinc      8624 Nov 27 09:37 runtime_log.err
[2025-11-27 09:37:23] -rw------- 1 boinc boinc       649 Nov 27 09:37 FtgKDmWZef8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm5ZFKDmLtYvFo.diag
[2025-11-27 09:37:23] -rw-r--r-- 1 boinc boinc      6997 Nov 27 09:37 stderr.txt
[2025-11-27 09:37:23] No HITS result produced
[2025-11-27 09:37:23]  *** Contents of shared directory: ***
[2025-11-27 09:37:23] total 400992
[2025-11-27 09:37:23] -rw-r--r-- 2 boinc boinc 409823490 Nov 27 09:33 ATLAS.root_0
[2025-11-27 09:37:23] -rw-r--r-- 2 boinc boinc    590097 Nov 27 09:33 input.tar.gz
[2025-11-27 09:37:23] -rw-r--r-- 2 boinc boinc     15120 Nov 27 09:33 start_atlas.sh
[2025-11-27 09:37:23] -rw------- 1 boinc boinc    174080 Nov 27 09:37 result.tar.gz
09:37:25 (3502799): run_atlas exited; CPU time 32.127740
09:37:25 (3502799): called boinc_finish(0)

</stderr_txt>
]]>

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