Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:47:37 (3437633): wrapper (7.7.26015): starting
15:47:37 (3437633): wrapper: running run_atlas (--nthreads 4)
[2025-11-30 15:47:38] Arguments: --nthreads 4
[2025-11-30 15:47:38] Threads: 4
[2025-11-30 15:47:38] Checking for CVMFS
[2025-11-30 15:47:38] No cvmfs_config command found, will try listing directly
[2025-11-30 15:47:38] CVMFS is ok
[2025-11-30 15:47:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-30 15:47:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-30 15:47:38] Further information can be found at the LHC@home message board.
[2025-11-30 15:47:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-30 15:47:38] Checking for apptainer binary...
[2025-11-30 15:47:38] which: no apptainer in ((null))
[2025-11-30 15:47:38] apptainer is not installed, using version from CVMFS
[2025-11-30 15:47:38] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-30 15:47:38] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot60/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut01.grid.cesnet.cz
[2025-11-30 15:47:38] apptainer works
[2025-11-30 15:47:38] Set ATHENA_PROC_NUMBER=4
[2025-11-30 15:47:38] Set ATHENA_CORE_NUMBER=4
[2025-11-30 15:47:38] Starting ATLAS job with PandaID=6897863664
[2025-11-30 15:47:38] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot60/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-01 10:11:49]  *** The last 200 lines of the pilot log: ***
[2025-12-01 10:11:49] 2025-12-01 09:08:46,395 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 10:11:49] 2025-12-01 09:08:47,919 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-01 10:11:49] 2025-12-01 09:08:47,929 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 2687.807984375
[2025-12-01 10:11:49] 2025-12-01 09:08:47,941 | INFO     | using path: /scratch/boinc/var/slot60/slots/0/PanDA_Pilot-6897863664/memory_monitor_summary.json (trf name=prmon)
[2025-12-01 10:11:49] 2025-12-01 09:08:47,942 | INFO     | extracted standard info from prmon json
[2025-12-01 10:11:49] 2025-12-01 09:08:47,942 | INFO     | extracted standard memory fields from prmon json
[2025-12-01 10:11:49] 2025-12-01 09:08:47,942 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-01 10:11:49] 2025-12-01 09:08:47,961 | INFO     | fitting pss+swap vs Time
[2025-12-01 10:11:49] 2025-12-01 09:08:47,962 | INFO     | sum of square deviations: 392787393407.17914
[2025-12-01 10:11:49] 2025-12-01 09:08:47,986 | INFO     | sum of deviations: 1302801263804.1863
[2025-12-01 10:11:49] 2025-12-01 09:08:47,986 | INFO     | mean x: 1764547085.5822551
[2025-12-01 10:11:49] 2025-12-01 09:08:47,986 | INFO     | mean y: 2285426.874306839
[2025-12-01 10:11:49] 2025-12-01 09:08:47,987 | INFO     | intersect: -5850382483.868621
[2025-12-01 10:11:49] 2025-12-01 09:08:47,988 | INFO     | chi2: 4.5041661730093665
[2025-12-01 10:11:49] 2025-12-01 09:08:47,989 | INFO     | sum of square deviations: 387367216599.6453
[2025-12-01 10:11:49] 2025-12-01 09:08:48,013 | INFO     | sum of deviations: 1540091111956.8167
[2025-12-01 10:11:49] 2025-12-01 09:08:48,013 | INFO     | mean x: 1764546933.082637
[2025-12-01 10:11:49] 2025-12-01 09:08:48,013 | INFO     | mean y: 2292100.754874652
[2025-12-01 10:11:49] 2025-12-01 09:08:48,014 | INFO     | intersect: -7013177799.166742
[2025-12-01 10:11:49] 2025-12-01 09:08:48,015 | INFO     | chi2: 2.1750143626831626
[2025-12-01 10:11:49] 2025-12-01 09:08:48,015 | INFO     | current chi2=2.1750143626831626 (change=51.71105418541938 %)
[2025-12-01 10:11:49] 2025-12-01 09:08:48,017 | INFO     | sum of square deviations: 381997133754.61096
[2025-12-01 10:11:49] 2025-12-01 09:08:48,040 | INFO     | sum of deviations: 1549258437017.4285
[2025-12-01 10:11:49] 2025-12-01 09:08:48,040 | INFO     | mean x: 1764546780.5830224
[2025-12-01 10:11:49] 2025-12-01 09:08:48,040 | INFO     | mean y: 2292358.5401119404
[2025-12-01 10:11:49] 2025-12-01 09:08:48,041 | INFO     | intersect: -7154146121.666654
[2025-12-01 10:11:49] 2025-12-01 09:08:48,042 | INFO     | chi2: 2.0959147315839965
[2025-12-01 10:11:49] 2025-12-01 09:08:48,042 | INFO     | current chi2=2.0959147315839965 (change=3.6367406329025984 %)
[2025-12-01 10:11:49] 2025-12-01 09:08:48,042 | INFO     | right removable region: 1071
[2025-12-01 10:11:49] 2025-12-01 09:08:48,044 | INFO     | sum of square deviations: 387367162309.6454
[2025-12-01 10:11:49] 2025-12-01 09:08:48,067 | INFO     | sum of deviations: 1092009326298.0455
[2025-12-01 10:11:49] 2025-12-01 09:08:48,067 | INFO     | mean x: 1764547238.082637
[2025-12-01 10:11:49] 2025-12-01 09:08:48,067 | INFO     | mean y: 2291349.280408542
[2025-12-01 10:11:49] 2025-12-01 09:08:48,068 | INFO     | intersect: -4972064321.940404
[2025-12-01 10:11:49] 2025-12-01 09:08:48,069 | INFO     | chi2: 2.5524555035189955
[2025-12-01 10:11:49] 2025-12-01 09:08:48,069 | INFO     | current chi2=2.5524555035189955 (change=43.331231453798146 %)
[2025-12-01 10:11:49] 2025-12-01 09:08:48,070 | INFO     | sum of square deviations: 381997156444.93896
[2025-12-01 10:11:49] 2025-12-01 09:08:48,094 | INFO     | sum of deviations: 1052205189037.971
[2025-12-01 10:11:49] 2025-12-01 09:08:48,094 | INFO     | mean x: 1764547390.5811567
[2025-12-01 10:11:49] 2025-12-01 09:08:48,094 | INFO     | mean y: 2292479.345149254
[2025-12-01 10:11:49] 2025-12-01 09:08:48,094 | INFO     | intersect: -4858125692.224471
[2025-12-01 10:11:49] 2025-12-01 09:08:48,096 | INFO     | chi2: 2.531232319494644
[2025-12-01 10:11:49] 2025-12-01 09:08:48,096 | INFO     | current chi2=2.531232319494644 (change=0.8314810579495693 %)
[2025-12-01 10:11:49] 2025-12-01 09:08:48,096 | INFO     | left removable region: 20
[2025-12-01 10:11:49] 2025-12-01 09:08:48,097 | INFO     | sum of square deviations: 359984737250.44525
[2025-12-01 10:11:49] 2025-12-01 09:08:48,120 | INFO     | sum of deviations: 1242377313992.8074
[2025-12-01 10:11:49] 2025-12-01 09:08:48,120 | INFO     | mean x: 1764547360.0789723
[2025-12-01 10:11:49] 2025-12-01 09:08:48,120 | INFO     | mean y: 2301000.303520457
[2025-12-01 10:11:49] 2025-12-01 09:08:48,121 | INFO     | intersect: -6087494990.416087
[2025-12-01 10:11:49] 2025-12-01 09:08:48,122 | INFO     | chi2: 0.10403527243684446
[2025-12-01 10:11:49] 2025-12-01 09:08:48,122 | INFO     | current memory leak: 3.45 B/s (using 1051 data points, chi2=0.10)
[2025-12-01 10:11:49] 2025-12-01 09:08:48,123 | INFO     | could have reported an average CPU frequency of 2668 MHz (39 samples)
[2025-12-01 10:11:49] 2025-12-01 09:08:48,124 | INFO     | ..............................
[2025-12-01 10:11:49] 2025-12-01 09:08:48,124 | INFO     | . Timing measurements:
[2025-12-01 10:11:49] 2025-12-01 09:08:48,124 | INFO     | . get job = 0 s
[2025-12-01 10:11:49] 2025-12-01 09:08:48,124 | INFO     | . initial setup = 1 s
[2025-12-01 10:11:49] 2025-12-01 09:08:48,124 | INFO     | . payload setup = 9 s
[2025-12-01 10:11:49] 2025-12-01 09:08:48,124 | INFO     | . stage-in = 0 s
[2025-12-01 10:11:49] 2025-12-01 09:08:48,124 | INFO     | . payload execution = 66013 s
[2025-12-01 10:11:49] 2025-12-01 09:08:48,124 | INFO     | . stage-out = 2 s
[2025-12-01 10:11:49] 2025-12-01 09:08:48,124 | INFO     | . log creation = 0 s
[2025-12-01 10:11:49] 2025-12-01 09:08:48,124 | INFO     | ..............................
[2025-12-01 10:11:49] 2025-12-01 09:08:48,226 | INFO     | time since job start (66055s) is within the limit (172800.0s)
[2025-12-01 10:11:49] 2025-12-01 09:08:48,713 | INFO     | 
[2025-12-01 10:11:49] 2025-12-01 09:08:48,713 | INFO     | job summary report
[2025-12-01 10:11:49] 2025-12-01 09:08:48,713 | INFO     | --------------------------------------------------
[2025-12-01 10:11:49] 2025-12-01 09:08:48,713 | INFO     | PanDA job id: 6897863664
[2025-12-01 10:11:49] 2025-12-01 09:08:48,713 | INFO     | task id: 47556161
[2025-12-01 10:11:49] 2025-12-01 09:08:48,713 | INFO     | errors: (none)
[2025-12-01 10:11:49] 2025-12-01 09:08:48,713 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-01 10:11:49] 2025-12-01 09:08:48,713 | INFO     | pilot state: finished 
[2025-12-01 10:11:49] 2025-12-01 09:08:48,713 | INFO     | transexitcode: 0
[2025-12-01 10:11:49] 2025-12-01 09:08:48,714 | INFO     | exeerrorcode: 0
[2025-12-01 10:11:49] 2025-12-01 09:08:48,714 | INFO     | exeerrordiag: 
[2025-12-01 10:11:49] 2025-12-01 09:08:48,714 | INFO     | exitcode: 0
[2025-12-01 10:11:49] 2025-12-01 09:08:48,714 | INFO     | exitmsg: OK
[2025-12-01 10:11:49] 2025-12-01 09:08:48,714 | INFO     | cpuconsumptiontime: 256568 s
[2025-12-01 10:11:49] 2025-12-01 09:08:48,714 | INFO     | nevents: 1000
[2025-12-01 10:11:49] 2025-12-01 09:08:48,714 | INFO     | neventsw: 0
[2025-12-01 10:11:49] 2025-12-01 09:08:48,714 | INFO     | pid: 3459020
[2025-12-01 10:11:49] 2025-12-01 09:08:48,714 | INFO     | pgrp: 3459020
[2025-12-01 10:11:49] 2025-12-01 09:08:48,714 | INFO     | corecount: 4
[2025-12-01 10:11:49] 2025-12-01 09:08:48,714 | INFO     | event service: False
[2025-12-01 10:11:49] 2025-12-01 09:08:48,714 | INFO     | sizes: {0: 2284276, 6: 2284538, 11: 2284566, 66026: 2339999, 66028: 2349015, 66032: 2349071, 66036: 2349445}
[2025-12-01 10:11:49] 2025-12-01 09:08:48,714 | INFO     | --------------------------------------------------
[2025-12-01 10:11:49] 2025-12-01 09:08:48,714 | INFO     | 
[2025-12-01 10:11:49] 2025-12-01 09:08:48,715 | INFO     | executing command: ls -lF /scratch/boinc/var/slot60/slots/0
[2025-12-01 10:11:49] 2025-12-01 09:08:48,736 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-01 10:11:49] 2025-12-01 09:08:48,737 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-01 10:11:49] 2025-12-01 09:08:48,737 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-01 10:11:49] 2025-12-01 09:08:48,737 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-01 10:11:49] 2025-12-01 09:08:48,737 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-01 10:11:49] 2025-12-01 09:08:48,737 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-01 10:11:49] 2025-12-01 09:08:48,737 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-01 10:11:49] 2025-12-01 09:08:48,737 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-01 10:11:49] 2025-12-01 09:08:48,738 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-01 10:11:49] 2025-12-01 09:08:48,738 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-01 10:11:49] 2025-12-01 09:08:48,738 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-01 10:11:49] 2025-12-01 09:08:48,738 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-01 10:11:49] 2025-12-01 09:08:48,738 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-01 10:11:49] 2025-12-01 09:08:48,738 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-01 10:11:49] 2025-12-01 09:08:48,738 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-01 10:11:49] 2025-12-01 09:08:48,738 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-01 10:11:49] 2025-12-01 09:08:48,738 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-01 10:11:49] 2025-12-01 09:08:48,738 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-01 10:11:49] 2025-12-01 09:08:48,739 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-01 10:11:49] 2025-12-01 09:08:48,739 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-01 10:11:49] 2025-12-01 09:08:48,739 | INFO     | job 6897863664 has completed (purged errors)
[2025-12-01 10:11:49] 2025-12-01 09:08:48,739 | INFO     | overall cleanup function is called
[2025-12-01 10:11:49] 2025-12-01 09:08:49,753 | INFO     | --- collectZombieJob: --- 10, [3459020]
[2025-12-01 10:11:49] 2025-12-01 09:08:49,753 | INFO     | zombie collector waiting for pid 3459020
[2025-12-01 10:11:49] 2025-12-01 09:08:49,753 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-01 10:11:49] 2025-12-01 09:08:49,753 | INFO     | collected zombie processes
[2025-12-01 10:11:49] 2025-12-01 09:08:49,754 | INFO     | will attempt to kill all subprocesses of pid=3459020
[2025-12-01 10:11:49] 2025-12-01 09:08:50,136 | INFO     | process IDs to be killed: [3459020] (in reverse order)
[2025-12-01 10:11:49] 2025-12-01 09:08:50,251 | WARNING  | found no corresponding commands to process id(s)
[2025-12-01 10:11:49] 2025-12-01 09:08:50,251 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-01 10:11:49] 2025-12-01 09:08:50,265 | INFO     | did not find any defunct processes belonging to 3459020
[2025-12-01 10:11:49] 2025-12-01 09:08:50,279 | INFO     | did not find any defunct processes belonging to 3459020
[2025-12-01 10:11:49] 2025-12-01 09:08:50,280 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-01 10:11:49] 2025-12-01 09:08:50,281 | INFO     | ready for new job
[2025-12-01 10:11:49] 2025-12-01 09:08:50,281 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-01 10:11:49] 2025-12-01 09:08:50,286 | INFO     | ***************************************
[2025-12-01 10:11:49] 2025-12-01 09:08:50,287 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-01 10:11:49] 2025-12-01 09:08:50,287 | INFO     | ***************************************
[2025-12-01 10:11:49] 2025-12-01 09:08:50,287 | INFO     | 
[2025-12-01 10:11:49] 2025-12-01 09:08:50,291 | INFO     | architecture information:
[2025-12-01 10:11:49] 2025-12-01 09:08:50,291 | INFO     | executing command: cat /etc/os-release
[2025-12-01 10:11:49] 2025-12-01 09:08:50,307 | INFO     | cat /etc/os-release:
[2025-12-01 10:11:49] NAME="CentOS Linux"
[2025-12-01 10:11:49] VERSION="7 (Core)"
[2025-12-01 10:11:49] ID="centos"
[2025-12-01 10:11:49] ID_LIKE="rhel fedora"
[2025-12-01 10:11:49] VERSION_ID="7"
[2025-12-01 10:11:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-01 10:11:49] ANSI_COLOR="0;31"
[2025-12-01 10:11:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-01 10:11:49] HOME_URL="https://www.centos.org/"
[2025-12-01 10:11:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-01 10:11:49] 
[2025-12-01 10:11:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-01 10:11:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-01 10:11:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-01 10:11:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-01 10:11:49] 
[2025-12-01 10:11:49] 2025-12-01 09:08:50,308 | INFO     | ***************************************
[2025-12-01 10:11:49] 2025-12-01 09:08:50,810 | INFO     | executing command: df -mP /scratch/boinc/var/slot60/slots/0
[2025-12-01 10:11:49] 2025-12-01 09:08:50,826 | INFO     | sufficient remaining disk space (603371601920 B)
[2025-12-01 10:11:49] 2025-12-01 09:08:50,826 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-01 10:11:49] 2025-12-01 09:08:50,827 | INFO     | current server update state: UPDATING_FINAL
[2025-12-01 10:11:49] 2025-12-01 09:08:50,827 | INFO     | update_server=False
[2025-12-01 10:11:49] 2025-12-01 09:08:50,827 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-01 10:11:49] 2025-12-01 09:08:50,827 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-01 10:11:49] 2025-12-01 09:08:50,827 | INFO     | aborting loop
[2025-12-01 10:11:49] 2025-12-01 09:08:50,857 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-01 10:11:49] 2025-12-01 09:08:50,861 | INFO     | all data control threads have been joined
[2025-12-01 10:11:49] 2025-12-01 09:08:51,020 | INFO     | all payload control threads have been joined
[2025-12-01 10:11:49] 2025-12-01 09:08:51,557 | INFO     | all job control threads have been joined
[2025-12-01 10:11:49] 2025-12-01 09:08:51,832 | INFO     | [job] retrieve thread has finished
[2025-12-01 10:11:49] 2025-12-01 09:08:51,833 | INFO     | [job] job monitor thread has finished
[2025-12-01 10:11:49] 2025-12-01 09:08:51,867 | INFO     | [data] control thread has finished
[2025-12-01 10:11:49] 2025-12-01 09:08:52,025 | INFO     | [payload] control thread has finished
[2025-12-01 10:11:49] 2025-12-01 09:08:52,126 | INFO     | [data] copytool_in thread has finished
[2025-12-01 10:11:49] 2025-12-01 09:08:52,189 | INFO     | [payload] execute_payloads thread has finished
[2025-12-01 10:11:49] 2025-12-01 09:08:52,320 | INFO     | [payload] failed_post thread has finished
[2025-12-01 10:11:49] 2025-12-01 09:08:52,367 | INFO     | [job] create_data_payload thread has finished
[2025-12-01 10:11:49] 2025-12-01 09:08:52,562 | INFO     | [job] control thread has finished
[2025-12-01 10:11:49] 2025-12-01 09:08:52,684 | INFO     | [job] validate thread has finished
[2025-12-01 10:11:49] 2025-12-01 09:08:52,831 | INFO     | [payload] validate_pre thread has finished
[2025-12-01 10:11:49] 2025-12-01 09:08:52,862 | INFO     | [data] copytool_out thread has finished
[2025-12-01 10:11:49] 2025-12-01 09:08:53,178 | INFO     | [payload] validate_post thread has finished
[2025-12-01 10:11:49] 2025-12-01 09:08:53,236 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-01 10:11:49] 2025-12-01 09:08:54,241 | INFO     | [job] queue monitor thread has finished
[2025-12-01 10:11:49] 2025-12-01 09:08:54,242 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-01 10:11:49] 2025-12-01 09:08:58,247 | INFO     | [data] queue_monitor thread has finished
[2025-12-01 10:11:49] 2025-12-01 09:09:01,835 | INFO     | job.realtimelogging is not enabled
[2025-12-01 10:11:49] 2025-12-01 09:09:02,840 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-01 10:11:49] 2025-12-01 09:09:21,775 | INFO     | PID=3445159 has CPU usage=8.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-01 10:11:49] 2025-12-01 09:09:21,776 | INFO     | .. there are 5 such processes running
[2025-12-01 10:11:49] 2025-12-01 09:09:21,776 | INFO     | found 0 job(s) in 20 queues
[2025-12-01 10:11:49] 2025-12-01 09:09:21,776 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-01 10:11:49] 2025-12-01 09:09:21,777 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-01 10:11:49] 2025-12-01 09:09:43,377 | INFO     | [monitor] cgroup control has ended
[2025-12-01 10:11:49] 2025-12-01 09:09:45,320 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22521258866496)>', '<ExcThread(monitor, started 22521015392000)>']
[2025-12-01 10:11:49] 2025-12-01 09:09:45,896 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-01 10:11:49] 2025-12-01 09:09:45,896 | INFO     | [monitor] control thread has ended
[2025-12-01 10:11:49] 2025-12-01 09:09:50,345 | INFO     | all workflow threads have been joined
[2025-12-01 10:11:49] 2025-12-01 09:09:50,345 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-01 10:11:49] 2025-12-01 09:09:50,345 | INFO     | traces error code: 0
[2025-12-01 10:11:49] 2025-12-01 09:09:50,346 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-01 10:11:49] 2025-12-01 09:09:50,531 [wrapper] ==== pilot stdout END ====
[2025-12-01 10:11:49] 2025-12-01 09:09:50,534 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-01 10:11:49] 2025-12-01 09:09:50,537 [wrapper] pilotpid: 3445159
[2025-12-01 10:11:49] 2025-12-01 09:09:50,539 [wrapper] Pilot exit status: 0
[2025-12-01 10:11:49] 2025-12-01 09:09:50,549 [wrapper] pandaids: 6897863664
[2025-12-01 10:11:49] 2025-12-01 09:09:50,627 [wrapper] cleanup supervisor_pilot  264814 3445160
[2025-12-01 10:11:49] 2025-12-01 09:09:50,630 [wrapper] Test setup, not cleaning
[2025-12-01 10:11:49] 2025-12-01 09:09:50,633 [wrapper] apfmon messages muted
[2025-12-01 10:11:49] 2025-12-01 09:09:50,635 [wrapper] ==== wrapper stdout END ====
[2025-12-01 10:11:49] 2025-12-01 09:09:50,638 [wrapper] ==== wrapper stderr END ====
[2025-12-01 10:11:49]  *** Error codes and diagnostics ***
[2025-12-01 10:11:49]     "exeErrorCode": 0,
[2025-12-01 10:11:49]     "exeErrorDiag": "",
[2025-12-01 10:11:49]     "pilotErrorCode": 0,
[2025-12-01 10:11:49]     "pilotErrorDiag": "",
[2025-12-01 10:11:49]  *** Listing of results directory ***
[2025-12-01 10:11:49] total 1336628
[2025-12-01 10:11:49] -rw-r--r-- 1 boinc boinc    576529 Nov 25 17:48 pilot3.tar.gz
[2025-12-01 10:11:49] -rwx------ 1 boinc boinc     36292 Nov 25 18:01 runpilot2-wrapper.sh
[2025-12-01 10:11:49] -rw-r--r-- 1 boinc boinc      5112 Nov 25 18:02 queuedata.json
[2025-12-01 10:11:49] -rw-r--r-- 1 boinc boinc       100 Nov 30 15:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-01 10:11:49] -rwxr-xr-x 1 boinc boinc      7986 Nov 30 15:47 run_atlas
[2025-12-01 10:11:49] -rw-r--r-- 1 boinc boinc       105 Nov 30 15:47 job.xml
[2025-12-01 10:11:49] -rw-r--r-- 2 boinc boinc 411026669 Nov 30 15:47 EVNT.47483658._002332.pool.root.1
[2025-12-01 10:11:49] -rw-r--r-- 1 boinc boinc      6634 Nov 30 15:47 init_data.xml
[2025-12-01 10:11:49] -rw-r--r-- 2 boinc boinc     15847 Nov 30 15:47 start_atlas.sh
[2025-12-01 10:11:49] drwxrwx--x 2 boinc boinc      4096 Nov 30 15:47 shared
[2025-12-01 10:11:49] -rw-r--r-- 2 boinc boinc    590109 Nov 30 15:47 input.tar.gz
[2025-12-01 10:11:49] -rw-r--r-- 1 boinc boinc         0 Nov 30 15:47 boinc_lockfile
[2025-12-01 10:11:49] -rw-r--r-- 1 boinc boinc      2786 Nov 30 15:47 pandaJob.out
[2025-12-01 10:11:49] -rw------- 1 boinc boinc    991799 Nov 30 15:47 agis_schedconf.cvmfs.json
[2025-12-01 10:11:49] drwx------ 5 boinc boinc      4096 Nov 30 15:47 pilot3
[2025-12-01 10:11:49] -rw-r--r-- 1 boinc boinc       531 Dec  1 10:01 boinc_task_state.xml
[2025-12-01 10:11:49] -rw------- 1 boinc boinc 931851125 Dec  1 10:07 HITS.47556161._003143.pool.root.1
[2025-12-01 10:11:49] -rw------- 1 boinc boinc      1046 Dec  1 10:08 memory_monitor_summary.json
[2025-12-01 10:11:49] -rw------- 1 boinc boinc   1516240 Dec  1 10:08 agis_ddmendpoints.agis.ALL.json
[2025-12-01 10:11:49] -rw------- 1 boinc boinc   1793722 Dec  1 10:08 log.47556161._003143.job.log.tgz.1
[2025-12-01 10:11:49] -rw------- 1 boinc boinc      8626 Dec  1 10:08 heartbeat.json
[2025-12-01 10:11:49] -rw------- 1 boinc boinc        95 Dec  1 10:09 pilot_heartbeat.json
[2025-12-01 10:11:49] -rw------- 1 boinc boinc      4905 Dec  1 10:09 pilotlog.txt
[2025-12-01 10:11:49] -rw------- 1 boinc boinc   9161574 Dec  1 10:09 log.47556161._003143.job.log.1
[2025-12-01 10:11:49] -rw------- 1 boinc boinc       353 Dec  1 10:09 output.list
[2025-12-01 10:11:49] -rw-r--r-- 1 boinc boinc       620 Dec  1 10:09 runtime_log
[2025-12-01 10:11:49] -rw------- 1 boinc boinc  10977280 Dec  1 10:09 result.tar.gz
[2025-12-01 10:11:49] -rw-r--r-- 1 boinc boinc      9206 Dec  1 10:09 runtime_log.err
[2025-12-01 10:11:49] -rw------- 1 boinc boinc       671 Dec  1 10:09 EuJODmXbBi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmSdMKDmNOcGem.diag
[2025-12-01 10:11:49] -rw-r--r-- 1 boinc boinc      8192 Dec  1 10:11 boinc_mmap_file
[2025-12-01 10:11:49] -rw-r--r-- 1 boinc boinc        28 Dec  1 10:11 wrapper_checkpoint.txt
[2025-12-01 10:11:49] -rw-r--r-- 1 boinc boinc     21088 Dec  1 10:11 stderr.txt
[2025-12-01 10:11:49] HITS file was successfully produced:
[2025-12-01 10:11:49] -rw------- 1 boinc boinc 931851125 Dec  1 10:07 shared/HITS.pool.root.1
[2025-12-01 10:11:49]  *** Contents of shared directory: ***
[2025-12-01 10:11:49] total 1322732
[2025-12-01 10:11:49] -rw-r--r-- 2 boinc boinc 411026669 Nov 30 15:47 ATLAS.root_0
[2025-12-01 10:11:49] -rw-r--r-- 2 boinc boinc     15847 Nov 30 15:47 start_atlas.sh
[2025-12-01 10:11:49] -rw-r--r-- 2 boinc boinc    590109 Nov 30 15:47 input.tar.gz
[2025-12-01 10:11:49] -rw------- 1 boinc boinc 931851125 Dec  1 10:07 HITS.pool.root.1
[2025-12-01 10:11:49] -rw------- 1 boinc boinc  10977280 Dec  1 10:09 result.tar.gz
10:11:51 (3437633): run_atlas exited; CPU time 259100.039226
10:11:51 (3437633): called boinc_finish(0)

</stderr_txt>
]]>

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