Stderr output

<core_client_version>7.24.5</core_client_version>
<![CDATA[
<stderr_txt>
06:37:48 (341803): wrapper (7.7.26015): starting
06:37:48 (341803): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 06:37:48] Arguments: --nthreads 8
[2025-11-27 06:37:48] Threads: 8
[2025-11-27 06:37:48] Checking for CVMFS
[2025-11-27 06:37:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 06:37:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 06:37:49] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 06:37:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 06:37:49] 2.11.3.0 1658007 5695 89816 153366 1 89 3389902 4096000 2530 130560 0 9379087 99.921 678492 715 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-27 06:37:49] CVMFS is ok
[2025-11-27 06:37:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 06:37:49] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-27 06:37:49] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-27 06:37:49] Further information can be found at the LHC@home message board.
[2025-11-27 06:37:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 06:37:49] Checking for apptainer binary...
[2025-11-27 06:37:49] apptainer is not installed, using version from CVMFS
[2025-11-27 06:37:49] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 06:37:49] officedc-System-Product-Name
[2025-11-27 06:37:49] apptainer works
[2025-11-27 06:37:49] Set ATHENA_PROC_NUMBER=8
[2025-11-27 06:37:49] Set ATHENA_CORE_NUMBER=8
[2025-11-27 06:37:49] Starting ATLAS job with PandaID=6898212797
[2025-11-27 06:37:49] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 12:21:45]  *** The last 200 lines of the pilot log: ***
[2025-11-27 12:21:45] 2025-11-27 19:21:12,306 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 12:21:45] 2025-11-27 19:21:12,646 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 12:21:45] 2025-11-27 19:21:12,649 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 3943.63975
[2025-11-27 12:21:45] 2025-11-27 19:21:12,653 | INFO     | using path: /var/lib/boinc-client/slots/1/PanDA_Pilot-6898212797/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 12:21:45] 2025-11-27 19:21:12,654 | INFO     | extracted standard info from prmon json
[2025-11-27 12:21:45] 2025-11-27 19:21:12,654 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 12:21:45] 2025-11-27 19:21:12,654 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 12:21:45] 2025-11-27 19:21:12,657 | INFO     | fitting pss+swap vs Time
[2025-11-27 12:21:45] 2025-11-27 19:21:12,658 | INFO     | sum of square deviations: 11973721748.958544
[2025-11-27 12:21:45] 2025-11-27 19:21:12,660 | INFO     | sum of deviations: 196688495145.349
[2025-11-27 12:21:45] 2025-11-27 19:21:12,660 | INFO     | mean x: 1764260978.7278106
[2025-11-27 12:21:45] 2025-11-27 19:21:12,660 | INFO     | mean y: 2841061.079881657
[2025-11-27 12:21:45] 2025-11-27 19:21:12,660 | INFO     | intersect: -28978109409.045753
[2025-11-27 12:21:45] 2025-11-27 19:21:12,660 | INFO     | chi2: 5.690161303434447
[2025-11-27 12:21:45] 2025-11-27 19:21:12,661 | INFO     | sum of square deviations: 11450191231.195175
[2025-11-27 12:21:45] 2025-11-27 19:21:12,663 | INFO     | sum of deviations: 295217541772.66956
[2025-11-27 12:21:45] 2025-11-27 19:21:12,663 | INFO     | mean x: 1764260826.2312312
[2025-11-27 12:21:45] 2025-11-27 19:21:12,663 | INFO     | mean y: 2869677.147147147
[2025-11-27 12:21:45] 2025-11-27 19:21:12,663 | INFO     | intersect: -45484645216.64886
[2025-11-27 12:21:45] 2025-11-27 19:21:12,663 | INFO     | chi2: 2.929876695627966
[2025-11-27 12:21:45] 2025-11-27 19:21:12,663 | INFO     | current chi2=2.929876695627966 (change=48.509777853581035 %)
[2025-11-27 12:21:45] 2025-11-27 19:21:12,664 | INFO     | sum of square deviations: 10942149375.923792
[2025-11-27 12:21:45] 2025-11-27 19:21:12,665 | INFO     | sum of deviations: 292823604403.22565
[2025-11-27 12:21:45] 2025-11-27 19:21:12,666 | INFO     | mean x: 1764260673.734756
[2025-11-27 12:21:45] 2025-11-27 19:21:12,666 | INFO     | mean y: 2868937.9451219514
[2025-11-27 12:21:45] 2025-11-27 19:21:12,666 | INFO     | intersect: -47210631064.76884
[2025-11-27 12:21:45] 2025-11-27 19:21:12,666 | INFO     | chi2: 2.888846329165252
[2025-11-27 12:21:45] 2025-11-27 19:21:12,666 | INFO     | current chi2=2.888846329165252 (change=1.4004127383224214 %)
[2025-11-27 12:21:45] 2025-11-27 19:21:12,666 | INFO     | right removable region: 327
[2025-11-27 12:21:45] 2025-11-27 19:21:12,666 | INFO     | sum of square deviations: 11450144261.195171
[2025-11-27 12:21:45] 2025-11-27 19:21:12,668 | INFO     | sum of deviations: 88469369233.55858
[2025-11-27 12:21:45] 2025-11-27 19:21:12,668 | INFO     | mean x: 1764261131.2312312
[2025-11-27 12:21:45] 2025-11-27 19:21:12,668 | INFO     | mean y: 2872535.3693693695
[2025-11-27 12:21:45] 2025-11-27 19:21:12,668 | INFO     | intersect: -13628664839.428694
[2025-11-27 12:21:45] 2025-11-27 19:21:12,669 | INFO     | chi2: 2.9334360740226253
[2025-11-27 12:21:45] 2025-11-27 19:21:12,669 | INFO     | current chi2=2.9334360740226253 (change=48.44722464630181 %)
[2025-11-27 12:21:45] 2025-11-27 19:21:12,669 | INFO     | sum of square deviations: 10942075870.390266
[2025-11-27 12:21:45] 2025-11-27 19:21:12,671 | INFO     | sum of deviations: 70192637978.12189
[2025-11-27 12:21:45] 2025-11-27 19:21:12,671 | INFO     | mean x: 1764261283.7317073
[2025-11-27 12:21:45] 2025-11-27 19:21:12,671 | INFO     | mean y: 2878009.6036585364
[2025-11-27 12:21:45] 2025-11-27 19:21:12,671 | INFO     | intersect: -11314732565.81812
[2025-11-27 12:21:45] 2025-11-27 19:21:12,672 | INFO     | chi2: 2.8904636855722377
[2025-11-27 12:21:45] 2025-11-27 19:21:12,672 | INFO     | current chi2=2.8904636855722377 (change=1.464916479037484 %)
[2025-11-27 12:21:45] 2025-11-27 19:21:12,672 | INFO     | left removable region: 20
[2025-11-27 12:21:45] 2025-11-27 19:21:12,672 | INFO     | sum of square deviations: 8972093801.18565
[2025-11-27 12:21:45] 2025-11-27 19:21:12,674 | INFO     | sum of deviations: 144893017323.57986
[2025-11-27 12:21:45] 2025-11-27 19:21:12,674 | INFO     | mean x: 1764261253.247557
[2025-11-27 12:21:45] 2025-11-27 19:21:12,674 | INFO     | mean y: 2914672.4397394136
[2025-11-27 12:21:45] 2025-11-27 19:21:12,674 | INFO     | intersect: -28488666222.126694
[2025-11-27 12:21:45] 2025-11-27 19:21:12,674 | INFO     | chi2: 0.022667932371121934
[2025-11-27 12:21:45] 2025-11-27 19:21:12,674 | INFO     | current memory leak: 16.15 B/s (using 307 data points, chi2=0.02)
[2025-11-27 12:21:45] 2025-11-27 19:21:12,675 | INFO     | could have reported an average CPU frequency of 3958 MHz (15 samples)
[2025-11-27 12:21:45] 2025-11-27 19:21:12,675 | INFO     | ..............................
[2025-11-27 12:21:45] 2025-11-27 19:21:12,675 | INFO     | . Timing measurements:
[2025-11-27 12:21:45] 2025-11-27 19:21:12,675 | INFO     | . get job = 0 s
[2025-11-27 12:21:45] 2025-11-27 19:21:12,675 | INFO     | . initial setup = 4 s
[2025-11-27 12:21:45] 2025-11-27 19:21:12,675 | INFO     | . payload setup = 3 s
[2025-11-27 12:21:45] 2025-11-27 19:21:12,675 | INFO     | . stage-in = 0 s
[2025-11-27 12:21:45] 2025-11-27 19:21:12,675 | INFO     | . payload execution = 20561 s
[2025-11-27 12:21:45] 2025-11-27 19:21:12,675 | INFO     | . stage-out = 3 s
[2025-11-27 12:21:45] 2025-11-27 19:21:12,675 | INFO     | . log creation = 0 s
[2025-11-27 12:21:45] 2025-11-27 19:21:12,675 | INFO     | ..............................
[2025-11-27 12:21:45] 2025-11-27 19:21:12,738 | INFO     | 
[2025-11-27 12:21:45] 2025-11-27 19:21:12,738 | INFO     | job summary report
[2025-11-27 12:21:45] 2025-11-27 19:21:12,738 | INFO     | --------------------------------------------------
[2025-11-27 12:21:45] 2025-11-27 19:21:12,738 | INFO     | PanDA job id: 6898212797
[2025-11-27 12:21:45] 2025-11-27 19:21:12,738 | INFO     | task id: 47556161
[2025-11-27 12:21:45] 2025-11-27 19:21:12,738 | INFO     | errors: (none)
[2025-11-27 12:21:45] 2025-11-27 19:21:12,738 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 12:21:45] 2025-11-27 19:21:12,738 | INFO     | pilot state: finished 
[2025-11-27 12:21:45] 2025-11-27 19:21:12,738 | INFO     | transexitcode: 0
[2025-11-27 12:21:45] 2025-11-27 19:21:12,738 | INFO     | exeerrorcode: 0
[2025-11-27 12:21:45] 2025-11-27 19:21:12,738 | INFO     | exeerrordiag: 
[2025-11-27 12:21:45] 2025-11-27 19:21:12,738 | INFO     | exitcode: 0
[2025-11-27 12:21:45] 2025-11-27 19:21:12,738 | INFO     | exitmsg: OK
[2025-11-27 12:21:45] 2025-11-27 19:21:12,738 | INFO     | cpuconsumptiontime: 154575 s
[2025-11-27 12:21:45] 2025-11-27 19:21:12,739 | INFO     | nevents: 1000
[2025-11-27 12:21:45] 2025-11-27 19:21:12,739 | INFO     | neventsw: 0
[2025-11-27 12:21:45] 2025-11-27 19:21:12,739 | INFO     | pid: 352365
[2025-11-27 12:21:45] 2025-11-27 19:21:12,739 | INFO     | pgrp: 352365
[2025-11-27 12:21:45] 2025-11-27 19:21:12,739 | INFO     | corecount: 8
[2025-11-27 12:21:45] 2025-11-27 19:21:12,739 | INFO     | event service: False
[2025-11-27 12:21:45] 2025-11-27 19:21:12,739 | INFO     | sizes: {0: 2284271, 3: 2284533, 11: 2284561, 20568: 2319164, 20573: 2328172, 20575: 2328228, 20579: 2328602}
[2025-11-27 12:21:45] 2025-11-27 19:21:12,739 | INFO     | --------------------------------------------------
[2025-11-27 12:21:45] 2025-11-27 19:21:12,739 | INFO     | 
[2025-11-27 12:21:45] 2025-11-27 19:21:12,739 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/1
[2025-11-27 12:21:45] 2025-11-27 19:21:12,756 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 12:21:45] 2025-11-27 19:21:12,756 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 12:21:45] 2025-11-27 19:21:12,756 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 12:21:45] 2025-11-27 19:21:12,756 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 12:21:45] 2025-11-27 19:21:12,756 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 12:21:45] 2025-11-27 19:21:12,756 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 12:21:45] 2025-11-27 19:21:12,756 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 12:21:45] 2025-11-27 19:21:12,756 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 12:21:45] 2025-11-27 19:21:12,756 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 12:21:45] 2025-11-27 19:21:12,756 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 12:21:45] 2025-11-27 19:21:12,756 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 12:21:45] 2025-11-27 19:21:12,756 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 12:21:45] 2025-11-27 19:21:12,757 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 12:21:45] 2025-11-27 19:21:12,757 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 12:21:45] 2025-11-27 19:21:12,757 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 12:21:45] 2025-11-27 19:21:12,757 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 12:21:45] 2025-11-27 19:21:12,757 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 12:21:45] 2025-11-27 19:21:12,757 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 12:21:45] 2025-11-27 19:21:12,757 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 12:21:45] 2025-11-27 19:21:12,757 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 12:21:45] 2025-11-27 19:21:12,757 | INFO     | job 6898212797 has completed (purged errors)
[2025-11-27 12:21:45] 2025-11-27 19:21:12,757 | INFO     | overall cleanup function is called
[2025-11-27 12:21:45] 2025-11-27 19:21:13,771 | INFO     | --- collectZombieJob: --- 10, [352365]
[2025-11-27 12:21:45] 2025-11-27 19:21:13,771 | INFO     | zombie collector waiting for pid 352365
[2025-11-27 12:21:45] 2025-11-27 19:21:13,771 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 12:21:45] 2025-11-27 19:21:13,772 | INFO     | collected zombie processes
[2025-11-27 12:21:45] 2025-11-27 19:21:13,772 | INFO     | will attempt to kill all subprocesses of pid=352365
[2025-11-27 12:21:45] 2025-11-27 19:21:13,903 | INFO     | process IDs to be killed: [352365] (in reverse order)
[2025-11-27 12:21:45] 2025-11-27 19:21:13,957 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 12:21:45] 2025-11-27 19:21:13,957 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 12:21:45] 2025-11-27 19:21:13,961 | INFO     | did not find any defunct processes belonging to 352365
[2025-11-27 12:21:45] 2025-11-27 19:21:13,964 | INFO     | did not find any defunct processes belonging to 352365
[2025-11-27 12:21:45] 2025-11-27 19:21:13,964 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 12:21:45] 2025-11-27 19:21:13,965 | INFO     | ready for new job
[2025-11-27 12:21:45] 2025-11-27 19:21:13,965 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 12:21:45] 2025-11-27 19:21:13,967 | INFO     | ***************************************
[2025-11-27 12:21:45] 2025-11-27 19:21:13,967 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 12:21:45] 2025-11-27 19:21:13,967 | INFO     | ***************************************
[2025-11-27 12:21:45] 2025-11-27 19:21:13,967 | INFO     | 
[2025-11-27 12:21:45] 2025-11-27 19:21:13,968 | INFO     | architecture information:
[2025-11-27 12:21:45] 2025-11-27 19:21:13,969 | INFO     | executing command: cat /etc/os-release
[2025-11-27 12:21:45] 2025-11-27 19:21:13,980 | INFO     | cat /etc/os-release:
[2025-11-27 12:21:45] NAME="CentOS Linux"
[2025-11-27 12:21:45] VERSION="7 (Core)"
[2025-11-27 12:21:45] ID="centos"
[2025-11-27 12:21:45] ID_LIKE="rhel fedora"
[2025-11-27 12:21:45] VERSION_ID="7"
[2025-11-27 12:21:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 12:21:45] ANSI_COLOR="0;31"
[2025-11-27 12:21:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 12:21:45] HOME_URL="https://www.centos.org/"
[2025-11-27 12:21:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 12:21:45] 
[2025-11-27 12:21:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 12:21:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 12:21:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 12:21:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 12:21:45] 
[2025-11-27 12:21:45] 2025-11-27 19:21:13,981 | INFO     | ***************************************
[2025-11-27 12:21:45] 2025-11-27 19:21:14,483 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/1
[2025-11-27 12:21:45] 2025-11-27 19:21:14,498 | INFO     | sufficient remaining disk space (379944173568 B)
[2025-11-27 12:21:45] 2025-11-27 19:21:14,498 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 12:21:45] 2025-11-27 19:21:14,498 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 12:21:45] 2025-11-27 19:21:14,498 | INFO     | update_server=False
[2025-11-27 12:21:45] 2025-11-27 19:21:14,498 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 12:21:45] 2025-11-27 19:21:14,499 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 12:21:45] 2025-11-27 19:21:14,499 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 12:21:45] 2025-11-27 19:21:14,750 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 12:21:45] 2025-11-27 19:21:14,809 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 12:21:45] 2025-11-27 19:21:14,809 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 12:21:45] 2025-11-27 19:21:14,809 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 12:21:45] 2025-11-27 19:21:14,810 | INFO     | will abort loop
[2025-11-27 12:21:45] 2025-11-27 19:21:15,300 | INFO     | all data control threads have been joined
[2025-11-27 12:21:45] 2025-11-27 19:21:15,503 | INFO     | [job] retrieve thread has finished
[2025-11-27 12:21:45] 2025-11-27 19:21:15,506 | INFO     | [job] queue monitor thread has finished
[2025-11-27 12:21:45] 2025-11-27 19:21:15,747 | INFO     | all job control threads have been joined
[2025-11-27 12:21:45] 2025-11-27 19:21:15,814 | INFO     | [job] job monitor thread has finished
[2025-11-27 12:21:45] 2025-11-27 19:21:15,877 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 12:21:45] 2025-11-27 19:21:15,893 | INFO     | all payload control threads have been joined
[2025-11-27 12:21:45] 2025-11-27 19:21:16,119 | INFO     | [job] validate thread has finished
[2025-11-27 12:21:45] 2025-11-27 19:21:16,252 | INFO     | [data] copytool_in thread has finished
[2025-11-27 12:21:45] 2025-11-27 19:21:16,305 | INFO     | [data] control thread has finished
[2025-11-27 12:21:45] 2025-11-27 19:21:16,377 | INFO     | [payload] validate_post thread has finished
[2025-11-27 12:21:45] 2025-11-27 19:21:16,442 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 12:21:45] 2025-11-27 19:21:16,504 | INFO     | [data] copytool_out thread has finished
[2025-11-27 12:21:45] 2025-11-27 19:21:16,512 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 12:21:45] 2025-11-27 19:21:16,753 | INFO     | [job] control thread has finished
[2025-11-27 12:21:45] 2025-11-27 19:21:16,898 | INFO     | [payload] control thread has finished
[2025-11-27 12:21:45] 2025-11-27 19:21:16,910 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 12:21:45] 2025-11-27 19:21:16,947 | INFO     | [payload] failed_post thread has finished
[2025-11-27 12:21:45] 2025-11-27 19:21:18,755 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 12:21:45] 2025-11-27 19:21:32,804 | INFO     | [monitor] cgroup control has ended
[2025-11-27 12:21:45] 2025-11-27 19:21:34,410 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 128781406271296)>', '<ExcThread(monitor, started 128780366509824)>']
[2025-11-27 12:21:45] 2025-11-27 19:21:39,435 | INFO     | all workflow threads have been joined
[2025-11-27 12:21:45] 2025-11-27 19:21:39,435 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 12:21:45] 2025-11-27 19:21:39,436 | INFO     | traces error code: 0
[2025-11-27 12:21:45] 2025-11-27 19:21:39,436 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 12:21:45] 2025-11-27 19:21:45,139 | INFO     | PID=345660 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 12:21:45] 2025-11-27 19:21:45,139 | INFO     | .. there are 4 such processes running
[2025-11-27 12:21:45] 2025-11-27 19:21:45,140 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 12:21:45] 2025-11-27 19:21:45,140 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 12:21:45] 2025-11-27 19:21:45,140 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 12:21:45] 2025-11-27 19:21:45,140 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 12:21:45] 2025-11-27 19:21:45,140 | INFO     | [monitor] control thread has ended
[2025-11-27 12:21:45] 2025-11-27 19:21:45,214 [wrapper] ==== pilot stdout END ====
[2025-11-27 12:21:45] 2025-11-27 19:21:45,216 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 12:21:45] 2025-11-27 19:21:45,218 [wrapper] pilotpid: 345660
[2025-11-27 12:21:45] 2025-11-27 19:21:45,220 [wrapper] Pilot exit status: 0
[2025-11-27 12:21:45] 2025-11-27 19:21:45,227 [wrapper] pandaids: 6898212797
[2025-11-27 12:21:45] 2025-11-27 19:21:45,257 [wrapper] cleanup supervisor_pilot  502270 345661
[2025-11-27 12:21:45] 2025-11-27 19:21:45,260 [wrapper] Test setup, not cleaning
[2025-11-27 12:21:45] 2025-11-27 19:21:45,261 [wrapper] apfmon messages muted
[2025-11-27 12:21:45] 2025-11-27 19:21:45,263 [wrapper] ==== wrapper stdout END ====
[2025-11-27 12:21:45] 2025-11-27 19:21:45,265 [wrapper] ==== wrapper stderr END ====
[2025-11-27 12:21:45]  *** Error codes and diagnostics ***
[2025-11-27 12:21:45]     "exeErrorCode": 0,
[2025-11-27 12:21:45]     "exeErrorDiag": "",
[2025-11-27 12:21:45]     "pilotErrorCode": 0,
[2025-11-27 12:21:45]     "pilotErrorDiag": "",
[2025-11-27 12:21:45]  *** Listing of results directory ***
[2025-11-27 12:21:45] total 1311000
[2025-11-27 12:21:45] -rw-r--r-- 1 boinc boinc    576529 Nov 25 20:33 pilot3.tar.gz
[2025-11-27 12:21:45] -rw-r--r-- 1 boinc boinc      5112 Nov 25 21:21 queuedata.json
[2025-11-27 12:21:45] -rwx------ 1 boinc boinc     36292 Nov 25 21:25 runpilot2-wrapper.sh
[2025-11-27 12:21:45] -rw-r--r-- 1 boinc boinc       100 Nov 27 06:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 12:21:45] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 06:37 run_atlas
[2025-11-27 12:21:45] -rw-r--r-- 1 boinc boinc       105 Nov 27 06:37 job.xml
[2025-11-27 12:21:45] -rw-r--r-- 1 boinc boinc      9772 Nov 27 06:37 init_data.xml
[2025-11-27 12:21:45] -rw-r--r-- 2 boinc boinc 408715365 Nov 27 06:37 EVNT.47483658._002483.pool.root.1
[2025-11-27 12:21:45] -rw-r--r-- 2 boinc boinc     15847 Nov 27 06:37 start_atlas.sh
[2025-11-27 12:21:45] drwxrwx--x 2 boinc boinc      4096 Nov 27 06:37 shared
[2025-11-27 12:21:45] -rw-r--r-- 2 boinc boinc    590104 Nov 27 06:37 input.tar.gz
[2025-11-27 12:21:45] -rw-r--r-- 1 boinc boinc         0 Nov 27 06:37 boinc_lockfile
[2025-11-27 12:21:45] -rw-r--r-- 1 boinc boinc      2785 Nov 27 06:37 pandaJob.out
[2025-11-27 12:21:45] -rw------- 1 boinc boinc    991588 Nov 27 06:37 agis_schedconf.cvmfs.json
[2025-11-27 12:21:45] drwx------ 5 boinc boinc      4096 Nov 27 06:37 pilot3
[2025-11-27 12:21:45] -rw-r--r-- 1 boinc boinc       533 Nov 27 12:15 boinc_task_state.xml
[2025-11-27 12:21:45] -rw------- 1 boinc boinc 920605273 Nov 27 12:20 HITS.47556161._004652.pool.root.1
[2025-11-27 12:21:45] -rw------- 1 boinc boinc      1036 Nov 27 12:20 memory_monitor_summary.json
[2025-11-27 12:21:45] -rw------- 1 boinc boinc   1516240 Nov 27 12:21 agis_ddmendpoints.agis.ALL.json
[2025-11-27 12:21:45] -rw------- 1 boinc boinc   1648152 Nov 27 12:21 log.47556161._004652.job.log.tgz.1
[2025-11-27 12:21:45] -rw------- 1 boinc boinc      8604 Nov 27 12:21 heartbeat.json
[2025-11-27 12:21:45] -rw-r--r-- 1 boinc boinc        29 Nov 27 12:21 wrapper_checkpoint.txt
[2025-11-27 12:21:45] -rw------- 1 boinc boinc       821 Nov 27 12:21 pilotlog.txt
[2025-11-27 12:21:45] -rw------- 1 boinc boinc        95 Nov 27 12:21 pilot_heartbeat.json
[2025-11-27 12:21:45] -rw-r--r-- 1 boinc boinc      8192 Nov 27 12:21 boinc_mmap_file
[2025-11-27 12:21:45] -rw------- 1 boinc boinc   2965367 Nov 27 12:21 log.47556161._004652.job.log.1
[2025-11-27 12:21:45] -rw------- 1 boinc boinc       353 Nov 27 12:21 output.list
[2025-11-27 12:21:45] -rw-r--r-- 1 boinc boinc       620 Nov 27 12:21 runtime_log
[2025-11-27 12:21:45] -rw------- 1 boinc boinc   4628480 Nov 27 12:21 result.tar.gz
[2025-11-27 12:21:45] -rw-r--r-- 1 boinc boinc      8968 Nov 27 12:21 runtime_log.err
[2025-11-27 12:21:45] -rw------- 1 boinc boinc       664 Nov 27 12:21 HIYKDmyGMi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmIvJKDmD7TOWo.diag
[2025-11-27 12:21:45] -rw-r--r-- 1 boinc boinc     21422 Nov 27 12:21 stderr.txt
[2025-11-27 12:21:45] HITS file was successfully produced:
[2025-11-27 12:21:45] -rw------- 1 boinc boinc 920605273 Nov 27 12:20 shared/HITS.pool.root.1
[2025-11-27 12:21:45]  *** Contents of shared directory: ***
[2025-11-27 12:21:45] total 1303296
[2025-11-27 12:21:45] -rw-r--r-- 2 boinc boinc 408715365 Nov 27 06:37 ATLAS.root_0
[2025-11-27 12:21:45] -rw-r--r-- 2 boinc boinc     15847 Nov 27 06:37 start_atlas.sh
[2025-11-27 12:21:45] -rw-r--r-- 2 boinc boinc    590104 Nov 27 06:37 input.tar.gz
[2025-11-27 12:21:45] -rw------- 1 boinc boinc 920605273 Nov 27 12:20 HITS.pool.root.1
[2025-11-27 12:21:45] -rw------- 1 boinc boinc   4628480 Nov 27 12:21 result.tar.gz
12:21:46 (341803): run_atlas exited; CPU time 154433.808304
12:21:46 (341803): called boinc_finish(0)

</stderr_txt>
]]>

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