Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-27 00:58:20 (18224): vboxwrapper version 26210
2025-11-27 00:58:20 (18224): BOINC client version: 8.2.4
2025-11-27 00:58:21 (18224): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-11-27 00:58:21 (18224): Successfully copied 'init_data.xml' to the shared directory.
2025-11-27 00:58:21 (18224): Create VM. (boinc_04d00e2969ef7eaf, slot#7)
2025-11-27 00:58:22 (18224): Setting Memory Size for VM. (4800MB)
2025-11-27 00:58:22 (18224): Setting CPU Count for VM. (8)
2025-11-27 00:58:22 (18224): Setting Chipset Options for VM.
2025-11-27 00:58:22 (18224): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-27 00:58:23 (18224): Setting Boot Options for VM.
2025-11-27 00:58:23 (18224): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-27 00:58:23 (18224): Enabling VM Network Access.
2025-11-27 00:58:24 (18224): Disabling USB Support for VM.
2025-11-27 00:58:24 (18224): Disabling COM Port Support for VM.
2025-11-27 00:58:24 (18224): Disabling LPT Port Support for VM.
2025-11-27 00:58:24 (18224): Disabling Audio Support for VM.
2025-11-27 00:58:25 (18224): Disabling Clipboard Support for VM.
2025-11-27 00:58:25 (18224): Disabling Drag and Drop Support for VM.
2025-11-27 00:58:25 (18224): Adding storage controller(s) to VM.
2025-11-27 00:58:25 (18224): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-27 00:58:27 (18224): Adding VirtualBox Guest Additions to VM.
2025-11-27 00:58:28 (18224): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-27 00:58:28 (18224): forwarding host port 59374 to guest port 80
2025-11-27 00:58:28 (18224): Enabling remote desktop for VM.
2025-11-27 00:58:29 (18224): Required extension pack not installed, remote desktop not enabled.
2025-11-27 00:58:29 (18224): Enabling shared directory for VM.
2025-11-27 00:58:29 (18224): Starting VM using VBoxManage interface. (boinc_04d00e2969ef7eaf, slot#7)
2025-11-27 00:58:35 (18224): Successfully started VM. (PID = '5556')
2025-11-27 00:58:35 (18224): Reporting VM Process ID to BOINC.
2025-11-27 00:58:35 (18224): Guest Log: BIOS: VirtualBox 7.0.6
2025-11-27 00:58:35 (18224): Guest Log: CPUID EDX: 0x178bfbff
2025-11-27 00:58:35 (18224): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-27 00:58:35 (18224): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-27 00:58:35 (18224): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-27 00:58:35 (18224): Detected: Web Application Enabled (http://localhost:59374)
2025-11-27 00:58:35 (18224): Preference change detected
2025-11-27 00:58:35 (18224): Setting CPU throttle for VM. (100%)
2025-11-27 00:58:35 (18224): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-27 00:58:37 (18224): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-27 00:58:37 (18224): Guest Log: BIOS: Booting from Hard Disk...
2025-11-27 00:58:40 (18224): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-27 00:58:40 (18224): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-27 00:58:40 (18224): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-27 00:58:40 (18224): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-27 00:58:40 (18224): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-27 00:58:40 (18224): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-27 00:58:40 (18224): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-27 00:58:40 (18224): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-27 00:58:40 (18224): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-27 00:58:40 (18224): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-27 00:58:40 (18224): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-27 00:58:40 (18224): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-27 00:58:40 (18224): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-27 00:58:40 (18224): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-27 00:58:40 (18224): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-27 00:58:40 (18224): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-27 00:58:40 (18224): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-27 00:58:40 (18224): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-27 00:58:40 (18224): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-27 00:58:40 (18224): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-27 00:58:40 (18224): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-27 00:58:40 (18224): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-27 00:58:40 (18224): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-27 00:58:40 (18224): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-27 00:58:40 (18224): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-27 00:58:40 (18224): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-27 00:58:40 (18224): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-27 00:58:40 (18224): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-27 00:58:40 (18224): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-27 00:58:40 (18224): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-27 00:58:40 (18224): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-27 00:58:40 (18224): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-27 00:58:46 (18224): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-27 00:58:46 (18224): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-27 00:58:50 (18224): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-27 00:58:50 (18224): Guest Log: 00:00:00.000259 main     Log opened 2025-11-27T00:58:48.257741000Z
2025-11-27 00:58:50 (18224): Guest Log: 00:00:00.000475 main     OS Product: Linux
2025-11-27 00:58:50 (18224): Guest Log: 00:00:00.000514 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-27 00:58:50 (18224): Guest Log: 00:00:00.000545 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-27 00:58:50 (18224): Guest Log: 00:00:00.000567 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-27 00:58:50 (18224): Guest Log: 00:00:00.000568 main     Process ID: 1372
2025-11-27 00:58:50 (18224): Guest Log: 00:00:00.000568 main     Package type: LINUX_64BITS_GENERIC
2025-11-27 00:58:50 (18224): Guest Log: 00:00:00.001113 main     5.2.32 r132073 started. Verbose level = 0
2025-11-27 00:58:50 (18224): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-27 00:58:50 (18224): Guest Log: [INFO] Mounting shared directory
2025-11-27 00:58:50 (18224): Guest Log: [INFO] Checking for init_data.xml
2025-11-27 00:59:00 (18224): Guest Log: 00:00:10.012379 timesync vgsvcTimeSyncWorker: Radical guest time change: 21 611 521 588 000ns (GuestNow=1 764 226 739 781 651 000 ns GuestLast=1 764 205 128 260 063 000 ns fSetTimeLastLoop=true )
2025-11-27 00:59:49 (18224): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-27 00:59:49 (18224): Guest Log: [INFO] Detected branch: prod
2025-11-27 00:59:49 (18224): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-27 00:59:49 (18224): Guest Log: Copying input files
2025-11-27 00:59:50 (18224): Guest Log: Copied input files into RunAtlas.
2025-11-27 00:59:50 (18224): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-27 00:59:50 (18224): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-27 00:59:50 (18224): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-27 00:59:50 (18224): Guest Log: Further information can be found at the LHC@home message board.
2025-11-27 01:00:00 (18224): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-27 01:00:00 (18224): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-27 01:00:00 (18224): Guest Log: 2.6.3.0 1679 0 32212 153350 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-11-27 01:00:01 (18224): Guest Log: copied the webapp to /var/www
2025-11-27 01:00:01 (18224): Guest Log: ATHENA_PROC_NUMBER=8
2025-11-27 01:00:01 (18224): Guest Log: ATHENA_CORE_NUMBER=8
2025-11-27 01:00:02 (18224): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-27 01:00:02 (18224): Guest Log:  *** Starting ATLAS job. (PandaID=6898212808 taskID=47556161) ***
2025-11-27 02:41:36 (18224): Preference change detected
2025-11-27 02:41:36 (18224): Setting CPU throttle for VM. (100%)
2025-11-27 02:41:36 (18224): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-27 02:46:26 (18224): Status Report: Elapsed Time: '6000.000000'
2025-11-27 02:46:26 (18224): Status Report: CPU Time: '32747.453125'
2025-11-27 04:39:30 (18224): Status Report: Elapsed Time: '12000.000000'
2025-11-27 04:39:30 (18224): Status Report: CPU Time: '87824.437500'
2025-11-27 06:33:22 (18224): Status Report: Elapsed Time: '18000.642298'
2025-11-27 06:33:22 (18224): Status Report: CPU Time: '143312.765625'
2025-11-27 08:26:43 (18224): Status Report: Elapsed Time: '24001.103235'
2025-11-27 08:26:43 (18224): Status Report: CPU Time: '198603.640625'
2025-11-27 09:35:30 (18224): Guest Log:  *** Job finished ***
2025-11-27 09:35:30 (18224): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-27 09:35:30 (18224): Guest Log: 2025-11-27 15:34:53,152 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-27 09:35:30 (18224): Guest Log: 2025-11-27 15:34:53,152 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-27 09:35:30 (18224): Guest Log: 2025-11-27 15:35:12,003 | INFO     | [monitor] cgroup control has ended
2025-11-27 09:35:30 (18224): Guest Log: 2025-11-27 15:35:13,637 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140119526979392)>', '<ExcThread(monitor, started 140118878844672)>']
2025-11-27 09:35:30 (18224): Guest Log: 2025-11-27 15:35:14,414 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-27 09:35:30 (18224): Guest Log: 2025-11-27 15:35:14,414 | INFO     | [monitor] control thread has ended
2025-11-27 09:35:30 (18224): Guest Log: 2025-11-27 15:35:18,664 | INFO     | all workflow threads have been joined
2025-11-27 09:35:30 (18224): Guest Log: 2025-11-27 15:35:18,664 | INFO     | end of generic workflow (traces error code: 0)
2025-11-27 09:35:30 (18224): Guest Log: 2025-11-27 15:35:18,665 | INFO     | traces error code: 0
2025-11-27 09:35:30 (18224): Guest Log: 2025-11-27 15:35:18,665 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-27 09:35:30 (18224): Guest Log: 2025-11-27 15:35:18,770 [wrapper] ==== pilot stdout END ====
2025-11-27 09:35:30 (18224): Guest Log: 2025-11-27 15:35:18,773 [wrapper] ==== wrapper stdout RESUME ====
2025-11-27 09:35:30 (18224): Guest Log: 2025-11-27 15:35:18,776 [wrapper] pilotpid: 6213
2025-11-27 09:35:30 (18224): Guest Log: 2025-11-27 15:35:18,778 [wrapper] Pilot exit status: 0
2025-11-27 09:35:30 (18224): Guest Log: 2025-11-27 15:35:18,797 [wrapper] pandaids: 6898212808
2025-11-27 09:35:30 (18224): Guest Log: 2025-11-27 15:35:18,825 [wrapper] cleanup supervisor_pilot  6308 6214
2025-11-27 09:35:30 (18224): Guest Log: 2025-11-27 15:35:18,829 [wrapper] Test setup, not cleaning
2025-11-27 09:35:30 (18224): Guest Log: 2025-11-27 15:35:18,832 [wrapper] apfmon messages muted
2025-11-27 09:35:30 (18224): Guest Log: 2025-11-27 15:35:18,834 [wrapper] ==== wrapper stdout END ====
2025-11-27 09:35:30 (18224): Guest Log: 2025-11-27 15:35:18,837 [wrapper] ==== wrapper stderr END ====
2025-11-27 09:35:30 (18224): Guest Log:  *** Error codes and diagnostics ***
2025-11-27 09:35:30 (18224): Guest Log:     "exeErrorCode": 0,
2025-11-27 09:35:30 (18224): Guest Log:     "exeErrorDiag": "",
2025-11-27 09:35:30 (18224): Guest Log:     "pilotErrorCode": 0,
2025-11-27 09:35:30 (18224): Guest Log:     "pilotErrorDiag": "",
2025-11-27 09:35:30 (18224): Guest Log:  *** Listing of results directory ***
2025-11-27 09:35:30 (18224): Guest Log: total 913620
2025-11-27 09:35:30 (18224): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 26 03:33 pilot3.tar.gz
2025-11-27 09:35:30 (18224): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 26 04:21 queuedata.json
2025-11-27 09:35:30 (18224): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 26 04:25 runpilot2-wrapper.sh
2025-11-27 09:35:30 (18224): Guest Log: -rwxr-xr-x. 1 atlas atlas    590107 Nov 27 06:59 input.tar.gz
2025-11-27 09:35:30 (18224): Guest Log: -rwxr-xr-x. 1 atlas atlas      8627 Nov 27 06:59 init_data.xml
2025-11-27 09:35:30 (18224): Guest Log: -rwxr-xr-x. 1 atlas atlas     15847 Nov 27 06:59 start_atlas.sh
2025-11-27 09:35:30 (18224): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 27 06:59 EVNT.47483658._002484.pool.root.1 -> /data/./ATLAS.root_0
2025-11-27 09:35:30 (18224): Guest Log: -rw-r--r--. 1 atlas atlas      2785 Nov 27 07:00 pandaJob.out
2025-11-27 09:35:30 (18224): Guest Log: -rw-------. 1 atlas atlas    991554 Nov 27 07:07 agis_schedconf.cvmfs.json
2025-11-27 09:35:30 (18224): Guest Log: drwx------. 5 atlas atlas      4096 Nov 27 07:08 pilot3
2025-11-27 09:35:30 (18224): Guest Log: -rw-------. 1 atlas atlas 920638170 Nov 27 15:33 HITS.47556161._004663.pool.root.1
2025-11-27 09:35:30 (18224): Guest Log: -rw-------. 1 atlas atlas        95 Nov 27 15:33 pilot_heartbeat.json
2025-11-27 09:35:30 (18224): Guest Log: -rw-------. 1 atlas atlas      1046 Nov 27 15:34 memory_monitor_summary.json
2025-11-27 09:35:30 (18224): Guest Log: -rw-------. 1 atlas atlas   1516240 Nov 27 15:34 agis_ddmendpoints.agis.ALL.json
2025-11-27 09:35:30 (18224): Guest Log: -rw-------. 1 atlas atlas   1765916 Nov 27 15:34 log.47556161._004663.job.log.tgz.1
2025-11-27 09:35:30 (18224): Guest Log: -rw-------. 1 atlas atlas      8658 Nov 27 15:34 heartbeat.json
2025-11-27 09:35:30 (18224): Guest Log: -rw-------. 1 atlas atlas      4805 Nov 27 15:35 pilotlog.txt
2025-11-27 09:35:30 (18224): Guest Log: -rw-------. 1 atlas atlas   3760456 Nov 27 15:35 log.47556161._004663.job.log.1
2025-11-27 09:35:30 (18224): Guest Log: -rw-------. 1 atlas atlas       353 Nov 27 15:35 output.list
2025-11-27 09:35:30 (18224): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 27 15:35 runtime_log
2025-11-27 09:35:30 (18224): Guest Log: -rw-------. 1 atlas atlas   5550080 Nov 27 15:35 result.tar.gz
2025-11-27 09:35:30 (18224): Guest Log: -rw-r--r--. 1 atlas atlas      8780 Nov 27 15:35 runtime_log.err
2025-11-27 09:35:30 (18224): Guest Log: -rw-------. 1 atlas atlas       671 Nov 27 15:35 BCmKDmyGMi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmSvJKDmVNYVHn.diag
2025-11-27 09:35:30 (18224): Guest Log: Looking for outputfile HITS.47556161._004663.pool.root.1
2025-11-27 09:35:30 (18224): Guest Log: HITS file was successfully produced
2025-11-27 09:35:30 (18224): Guest Log: -rw-------. 1 atlas atlas 920638170 Nov 27 15:33 /home/atlas/RunAtlas/HITS.47556161._004663.pool.root.1
2025-11-27 09:35:33 (18224): Guest Log: Successfully finished the ATLAS job!
2025-11-27 09:35:33 (18224): Guest Log: Copying the results back to the shared directory!
2025-11-27 09:35:33 (18224): Guest Log:  *** Contents of shared directory: ***
2025-11-27 09:35:33 (18224): Guest Log: total 1302144
2025-11-27 09:35:33 (18224): Guest Log: -rwxrwxrwx. 1 root root 406577273 Nov 27 06:58 ATLAS.root_0
2025-11-27 09:35:33 (18224): Guest Log: -rwxrwxrwx. 1 root root 920638170 Nov 27  2025 HITS.pool.root.1
2025-11-27 09:35:33 (18224): Guest Log: -rwxrwxrwx. 1 root root      8627 Nov 27 06:58 init_data.xml
2025-11-27 09:35:33 (18224): Guest Log: -rwxrwxrwx. 1 root root    590107 Nov 27 06:58 input.tar.gz
2025-11-27 09:35:33 (18224): Guest Log: -rwxrwxrwx. 1 root root   5550080 Nov 27  2025 result.tar.gz
2025-11-27 09:35:33 (18224): Guest Log: -rwxrwxrwx. 1 root root     15847 Nov 27 06:58 start_atlas.sh
2025-11-27 09:35:33 (18224): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-27 09:35:33 (18224): VM Completion File Detected.
2025-11-27 09:35:33 (18224): Powering off VM.
2025-11-27 09:35:34 (18224): Successfully stopped VM.
2025-11-27 09:35:34 (18224): Deregistering VM. (boinc_04d00e2969ef7eaf, slot#7)
2025-11-27 09:35:34 (18224): Removing network bandwidth throttle group from VM.
2025-11-27 09:35:35 (18224): Removing VM from VirtualBox.
2025-11-27 09:35:40 (18224): called boinc_finish(0)

</stderr_txt>
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