Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
04:00:20 (635709): wrapper (7.7.26015): starting
04:00:20 (635709): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 04:00:20] Arguments: --nthreads 8
[2025-11-27 04:00:20] Threads: 8
[2025-11-27 04:00:20] Checking for CVMFS
[2025-11-27 04:00:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 04:00:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 04:00:21] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 04:00:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 04:00:22] 2.13.2.0 7693 35002 180028 153357 3 173 30348895 39288833 7524 16776704 0 30680719 99.646 27147013 31835 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 04:00:22] CVMFS is ok
[2025-11-27 04:00:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 04:00:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 04:00:22] Further information can be found at the LHC@home message board.
[2025-11-27 04:00:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 04:00:22] Checking for apptainer binary...
[2025-11-27 04:00:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 04:00:22] Running /usr/bin/apptainer --version
[2025-11-27 04:00:22] apptainer version 1.4.4-1.el9
[2025-11-27 04:00:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 04:00:23] c-210-18.aglt2.org
[2025-11-27 04:00:23] apptainer works
[2025-11-27 04:00:23] Set ATHENA_PROC_NUMBER=8
[2025-11-27 04:00:23] Set ATHENA_CORE_NUMBER=8
[2025-11-27 04:00:23] Starting ATLAS job with PandaID=6898215313
[2025-11-27 04:00:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 11:52:02]  *** The last 200 lines of the pilot log: ***
[2025-11-28 11:52:02] 2025-11-28 16:51:05,650 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 11:52:02] 2025-11-28 16:51:05,843 | INFO     | time since job start (114573s) is within the limit (172800.0s)
[2025-11-28 11:52:02] 2025-11-28 16:51:07,850 | INFO     | time since job start (114575s) is within the limit (172800.0s)
[2025-11-28 11:52:02] 2025-11-28 16:51:08,155 | INFO     | monitor loop #7344: job 0:6898215313 is in state 'finished'
[2025-11-28 11:52:02] 2025-11-28 16:51:08,156 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 11:52:02] 2025-11-28 16:51:09,858 | INFO     | time since job start (114577s) is within the limit (172800.0s)
[2025-11-28 11:52:02] 2025-11-28 16:51:10,659 | INFO     | monitor loop #7345: job 0:6898215313 is in state 'finished'
[2025-11-28 11:52:02] 2025-11-28 16:51:10,661 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 11:52:02] 2025-11-28 16:51:11,865 | INFO     | time since job start (114579s) is within the limit (172800.0s)
[2025-11-28 11:52:02] 2025-11-28 16:51:13,166 | INFO     | monitor loop #7346: job 0:6898215313 is in state 'finished'
[2025-11-28 11:52:02] 2025-11-28 16:51:13,167 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 11:52:02] 2025-11-28 16:51:13,872 | INFO     | time since job start (114581s) is within the limit (172800.0s)
[2025-11-28 11:52:02] 2025-11-28 16:51:15,434 | INFO     | PID=639504 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-28 11:52:02] 2025-11-28 16:51:15,434 | INFO     | .. there are 6 such processes running
[2025-11-28 11:52:02] 2025-11-28 16:51:15,460 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-28 11:52:02] 2025-11-28 16:51:15,472 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2599.9835249999996
[2025-11-28 11:52:02] 2025-11-28 16:51:15,480 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6898215313/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 11:52:02] 2025-11-28 16:51:15,481 | INFO     | extracted standard info from prmon json
[2025-11-28 11:52:02] 2025-11-28 16:51:15,481 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 11:52:02] 2025-11-28 16:51:15,482 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 11:52:02] 2025-11-28 16:51:15,604 | INFO     | fitting pss+swap vs Time
[2025-11-28 11:52:02] 2025-11-28 16:51:15,608 | INFO     | sum of square deviations: 2047348496453.4624
[2025-11-28 11:52:02] 2025-11-28 16:51:15,674 | INFO     | monitor loop #7347: job 0:6898215313 is in state 'finished'
[2025-11-28 11:52:02] 2025-11-28 16:51:15,683 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 11:52:02] 2025-11-28 16:51:15,814 | INFO     | sum of deviations: 7231433368558.41
[2025-11-28 11:52:02] 2025-11-28 16:51:15,814 | INFO     | mean x: 1764291437.607143
[2025-11-28 11:52:02] 2025-11-28 16:51:15,815 | INFO     | mean y: 2973226.147121535
[2025-11-28 11:52:02] 2025-11-28 16:51:15,815 | INFO     | intersect: -6228675169.753702
[2025-11-28 11:52:02] 2025-11-28 16:51:15,817 | INFO     | chi2: 18.902054826535128
[2025-11-28 11:52:02] 2025-11-28 16:51:15,821 | INFO     | sum of square deviations: 2031024940288.8953
[2025-11-28 11:52:02] 2025-11-28 16:51:15,911 | INFO     | sum of deviations: 7929867897436.427
[2025-11-28 11:52:02] 2025-11-28 16:51:15,912 | INFO     | mean x: 1764291285.1181188
[2025-11-28 11:52:02] 2025-11-28 16:51:15,912 | INFO     | mean y: 2979749.789951897
[2025-11-28 11:52:02] 2025-11-28 16:51:15,912 | INFO     | intersect: -6885461916.315334
[2025-11-28 11:52:02] 2025-11-28 16:51:15,914 | INFO     | chi2: 15.244983015824959
[2025-11-28 11:52:02] 2025-11-28 16:51:15,915 | INFO     | current chi2=15.244983015824959 (change=19.347482822747345 %)
[2025-11-28 11:52:02] 2025-11-28 16:51:15,915 | INFO     | right removable region: 1870
[2025-11-28 11:52:02] 2025-11-28 16:51:15,917 | INFO     | sum of square deviations: 2031020240238.8962
[2025-11-28 11:52:02] 2025-11-28 16:51:15,999 | INFO     | sum of deviations: 6466841075240.855
[2025-11-28 11:52:02] 2025-11-28 16:51:15,999 | INFO     | mean x: 1764291590.1181188
[2025-11-28 11:52:02] 2025-11-28 16:51:15,999 | INFO     | mean y: 2980366.5708177444
[2025-11-28 11:52:02] 2025-11-28 16:51:15,999 | INFO     | intersect: -5614587148.332844
[2025-11-28 11:52:02] 2025-11-28 16:51:16,002 | INFO     | chi2: 14.914553243485935
[2025-11-28 11:52:02] 2025-11-28 16:51:16,002 | INFO     | current chi2=14.914553243485935 (change=21.095598439654555 %)
[2025-11-28 11:52:02] 2025-11-28 16:51:16,002 | INFO     | left removable region: 10
[2025-11-28 11:52:02] 2025-11-28 16:51:16,005 | INFO     | sum of square deviations: 1995409716781.2412
[2025-11-28 11:52:02] 2025-11-28 16:51:16,087 | INFO     | sum of deviations: 6731448465677.552
[2025-11-28 11:52:02] 2025-11-28 16:51:16,088 | INFO     | mean x: 1764291559.6424732
[2025-11-28 11:52:02] 2025-11-28 16:51:16,088 | INFO     | mean y: 2993386.4865591396
[2025-11-28 11:52:02] 2025-11-28 16:51:16,088 | INFO     | intersect: -5948785645.300718
[2025-11-28 11:52:02] 2025-11-28 16:51:16,091 | INFO     | chi2: 8.605600541282877
[2025-11-28 11:52:02] 2025-11-28 16:51:16,091 | INFO     | current memory leak: 3.37 B/s (using 1860 data points, chi2=8.61)
[2025-11-28 11:52:02] 2025-11-28 16:51:16,093 | INFO     | could have reported an average CPU frequency of 2599 MHz (66 samples)
[2025-11-28 11:52:02] 2025-11-28 16:51:16,094 | INFO     | ..............................
[2025-11-28 11:52:02] 2025-11-28 16:51:16,094 | INFO     | . Timing measurements:
[2025-11-28 11:52:02] 2025-11-28 16:51:16,094 | INFO     | . get job = 0 s
[2025-11-28 11:52:02] 2025-11-28 16:51:16,094 | INFO     | . initial setup = 5 s
[2025-11-28 11:52:02] 2025-11-28 16:51:16,094 | INFO     | . payload setup = 46 s
[2025-11-28 11:52:02] 2025-11-28 16:51:16,094 | INFO     | . stage-in = 0 s
[2025-11-28 11:52:02] 2025-11-28 16:51:16,094 | INFO     | . payload execution = 114413 s
[2025-11-28 11:52:02] 2025-11-28 16:51:16,094 | INFO     | . stage-out = 10 s
[2025-11-28 11:52:02] 2025-11-28 16:51:16,094 | INFO     | . log creation = 4 s
[2025-11-28 11:52:02] 2025-11-28 16:51:16,095 | INFO     | ..............................
[2025-11-28 11:52:02] 2025-11-28 16:51:16,435 | INFO     | time since job start (114584s) is within the limit (172800.0s)
[2025-11-28 11:52:02] 2025-11-28 16:51:16,660 | INFO     | 
[2025-11-28 11:52:02] 2025-11-28 16:51:16,661 | INFO     | job summary report
[2025-11-28 11:52:02] 2025-11-28 16:51:16,662 | INFO     | --------------------------------------------------
[2025-11-28 11:52:02] 2025-11-28 16:51:16,662 | INFO     | PanDA job id: 6898215313
[2025-11-28 11:52:02] 2025-11-28 16:51:16,662 | INFO     | task id: 47556161
[2025-11-28 11:52:02] 2025-11-28 16:51:16,662 | INFO     | errors: (none)
[2025-11-28 11:52:02] 2025-11-28 16:51:16,685 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 11:52:02] 2025-11-28 16:51:16,685 | INFO     | pilot state: finished 
[2025-11-28 11:52:02] 2025-11-28 16:51:16,686 | INFO     | transexitcode: 0
[2025-11-28 11:52:02] 2025-11-28 16:51:16,686 | INFO     | exeerrorcode: 0
[2025-11-28 11:52:02] 2025-11-28 16:51:16,686 | INFO     | exeerrordiag: 
[2025-11-28 11:52:02] 2025-11-28 16:51:16,686 | INFO     | exitcode: 0
[2025-11-28 11:52:02] 2025-11-28 16:51:16,686 | INFO     | exitmsg: OK
[2025-11-28 11:52:02] 2025-11-28 16:51:16,686 | INFO     | cpuconsumptiontime: 306187 s
[2025-11-28 11:52:02] 2025-11-28 16:51:16,686 | INFO     | nevents: 1000
[2025-11-28 11:52:02] 2025-11-28 16:51:16,686 | INFO     | neventsw: 0
[2025-11-28 11:52:02] 2025-11-28 16:51:16,686 | INFO     | pid: 646379
[2025-11-28 11:52:02] 2025-11-28 16:51:16,687 | INFO     | pgrp: 646379
[2025-11-28 11:52:02] 2025-11-28 16:51:16,687 | INFO     | corecount: 8
[2025-11-28 11:52:02] 2025-11-28 16:51:16,687 | INFO     | event service: False
[2025-11-28 11:52:02] 2025-11-28 16:51:16,687 | INFO     | sizes: {0: 2283436, 1: 2284121, 2: 2284320, 13: 2284320, 24: 2284376, 34: 2284404, 36: 2284822, 46: 2284850, 114464: 2365000, 114465: 2364999, 114476: 2374077, 114
[2025-11-28 11:52:02] 2025-11-28 16:51:16,687 | INFO     | --------------------------------------------------
[2025-11-28 11:52:02] 2025-11-28 16:51:16,687 | INFO     | 
[2025-11-28 11:52:02] 2025-11-28 16:51:16,687 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-28 11:52:02] 2025-11-28 16:51:16,833 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 11:52:02] 2025-11-28 16:51:16,833 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 11:52:02] 2025-11-28 16:51:16,833 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 11:52:02] 2025-11-28 16:51:16,833 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 11:52:02] 2025-11-28 16:51:16,834 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 11:52:02] 2025-11-28 16:51:16,834 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 11:52:02] 2025-11-28 16:51:16,834 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 11:52:02] 2025-11-28 16:51:16,834 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 11:52:02] 2025-11-28 16:51:16,834 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 11:52:02] 2025-11-28 16:51:16,834 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 11:52:02] 2025-11-28 16:51:16,834 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 11:52:02] 2025-11-28 16:51:16,834 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 11:52:02] 2025-11-28 16:51:16,834 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 11:52:02] 2025-11-28 16:51:16,835 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 11:52:02] 2025-11-28 16:51:16,835 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 11:52:02] 2025-11-28 16:51:16,835 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 11:52:02] 2025-11-28 16:51:16,835 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 11:52:02] 2025-11-28 16:51:16,835 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 11:52:02] 2025-11-28 16:51:16,835 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 11:52:02] 2025-11-28 16:51:16,835 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 11:52:02] 2025-11-28 16:51:16,835 | INFO     | job 6898215313 has completed (purged errors)
[2025-11-28 11:52:02] 2025-11-28 16:51:16,836 | INFO     | overall cleanup function is called
[2025-11-28 11:52:02] 2025-11-28 16:51:17,950 | INFO     | --- collectZombieJob: --- 10, [646379]
[2025-11-28 11:52:02] 2025-11-28 16:51:17,951 | INFO     | zombie collector waiting for pid 646379
[2025-11-28 11:52:02] 2025-11-28 16:51:17,951 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 11:52:02] 2025-11-28 16:51:17,951 | INFO     | collected zombie processes
[2025-11-28 11:52:02] 2025-11-28 16:51:17,951 | INFO     | will attempt to kill all subprocesses of pid=646379
[2025-11-28 11:52:02] 2025-11-28 16:51:18,591 | INFO     | process IDs to be killed: [646379] (in reverse order)
[2025-11-28 11:52:02] 2025-11-28 16:51:18,784 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 11:52:02] 2025-11-28 16:51:18,785 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 11:52:02] 2025-11-28 16:51:18,801 | INFO     | did not find any defunct processes belonging to 646379
[2025-11-28 11:52:02] 2025-11-28 16:51:18,818 | INFO     | did not find any defunct processes belonging to 646379
[2025-11-28 11:52:02] 2025-11-28 16:51:18,823 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 11:52:02] 2025-11-28 16:51:18,824 | INFO     | ready for new job
[2025-11-28 11:52:02] 2025-11-28 16:51:18,824 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 11:52:02] 2025-11-28 16:51:18,892 | INFO     | ***************************************
[2025-11-28 11:52:02] 2025-11-28 16:51:18,893 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 11:52:02] 2025-11-28 16:51:18,894 | INFO     | ***************************************
[2025-11-28 11:52:02] 2025-11-28 16:51:18,894 | INFO     | 
[2025-11-28 11:52:02] 2025-11-28 16:51:18,896 | INFO     | architecture information:
[2025-11-28 11:52:02] 2025-11-28 16:51:18,959 | INFO     | executing command: cat /etc/os-release
[2025-11-28 11:52:02] 2025-11-28 16:51:19,216 | INFO     | cat /etc/os-release:
[2025-11-28 11:52:02] NAME="CentOS Linux"
[2025-11-28 11:52:02] VERSION="7 (Core)"
[2025-11-28 11:52:02] ID="centos"
[2025-11-28 11:52:02] ID_LIKE="rhel fedora"
[2025-11-28 11:52:02] VERSION_ID="7"
[2025-11-28 11:52:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 11:52:02] ANSI_COLOR="0;31"
[2025-11-28 11:52:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 11:52:02] HOME_URL="https://www.centos.org/"
[2025-11-28 11:52:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 11:52:02] 
[2025-11-28 11:52:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 11:52:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 11:52:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 11:52:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 11:52:02] 
[2025-11-28 11:52:02] 2025-11-28 16:51:19,216 | INFO     | ***************************************
[2025-11-28 11:52:02] 2025-11-28 16:51:19,719 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-28 11:52:02] 2025-11-28 16:51:19,975 | INFO     | sufficient remaining disk space (51193577472 B)
[2025-11-28 11:52:02] 2025-11-28 16:51:19,975 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 11:52:02] 2025-11-28 16:51:19,975 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 11:52:02] 2025-11-28 16:51:19,976 | INFO     | update_server=False
[2025-11-28 11:52:02] 2025-11-28 16:51:19,976 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 11:52:02] 2025-11-28 16:51:20,001 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 11:52:02] 2025-11-28 16:51:20,002 | INFO     | aborting loop
[2025-11-28 11:52:02] 2025-11-28 16:51:20,390 | INFO     | all job control threads have been joined
[2025-11-28 11:52:02] 2025-11-28 16:51:20,945 | INFO     | all data control threads have been joined
[2025-11-28 11:52:02] 2025-11-28 16:51:20,981 | INFO     | [job] retrieve thread has finished
[2025-11-28 11:52:02] 2025-11-28 16:51:21,007 | INFO     | [job] job monitor thread has finished
[2025-11-28 11:52:02] 2025-11-28 16:51:21,100 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 11:52:02] 2025-11-28 16:51:21,163 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 11:52:02] 2025-11-28 16:51:21,229 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 11:52:02] 2025-11-28 16:51:21,273 | INFO     | [payload] failed_post thread has finished
[2025-11-28 11:52:02] 2025-11-28 16:51:21,353 | INFO     | all payload control threads have been joined
[2025-11-28 11:52:02] 2025-11-28 16:51:21,398 | INFO     | [job] control thread has finished
[2025-11-28 11:52:02] 2025-11-28 16:51:21,465 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 11:52:02] 2025-11-28 16:51:21,820 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 11:52:02] 2025-11-28 16:51:21,951 | INFO     | [data] control thread has finished
[2025-11-28 11:52:02] 2025-11-28 16:51:22,235 | INFO     | [job] queue monitor thread has finished
[2025-11-28 11:52:02] 2025-11-28 16:51:22,331 | INFO     | [job] validate thread has finished
[2025-11-28 11:52:02] 2025-11-28 16:51:22,332 | INFO     | [payload] validate_post thread has finished
[2025-11-28 11:52:02] 2025-11-28 16:51:22,360 | INFO     | [payload] control thread has finished
[2025-11-28 11:52:02] 2025-11-28 16:51:22,413 | INFO     | [data] copytool_in thread has finished
[2025-11-28 11:52:02] 2025-11-28 16:51:22,467 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 11:52:02] 2025-11-28 16:51:22,478 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 11:52:02] 2025-11-28 16:51:23,107 | INFO     | [data] copytool_out thread has finished
[2025-11-28 11:52:02] 2025-11-28 16:51:25,829 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 11:52:02] 2025-11-28 16:51:50,029 | INFO     | PID=639504 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-28 11:52:02] 2025-11-28 16:51:50,030 | INFO     | .. there are 6 such processes running
[2025-11-28 11:52:02] 2025-11-28 16:51:50,031 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 11:52:02] 2025-11-28 16:51:50,031 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 11:52:02] 2025-11-28 16:51:50,031 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 11:52:02] 2025-11-28 16:51:53,145 | INFO     | [monitor] cgroup control has ended
[2025-11-28 11:52:02] 2025-11-28 16:51:55,249 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139669764466496)>', '<ExcThread(monitor, started 139669048129280)>']
[2025-11-28 11:52:02] 2025-11-28 16:51:56,066 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 11:52:02] 2025-11-28 16:51:56,067 | INFO     | [monitor] control thread has ended
[2025-11-28 11:52:02] 2025-11-28 16:52:00,276 | INFO     | all workflow threads have been joined
[2025-11-28 11:52:02] 2025-11-28 16:52:00,277 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 11:52:02] 2025-11-28 16:52:00,277 | INFO     | traces error code: 0
[2025-11-28 11:52:02] 2025-11-28 16:52:00,277 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 11:52:02] 2025-11-28 16:52:00,982 [wrapper] ==== pilot stdout END ====
[2025-11-28 11:52:02] 2025-11-28 16:52:01,042 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 11:52:02] 2025-11-28 16:52:01,092 [wrapper] pilotpid: 639504
[2025-11-28 11:52:02] 2025-11-28 16:52:01,134 [wrapper] Pilot exit status: 0
[2025-11-28 11:52:02] 2025-11-28 16:52:01,224 [wrapper] pandaids: 6898215313
[2025-11-28 11:52:02] 2025-11-28 16:52:01,331 [wrapper] cleanup supervisor_pilot 3409884 639505
[2025-11-28 11:52:02] 2025-11-28 16:52:01,344 [wrapper] Test setup, not cleaning
[2025-11-28 11:52:02] 2025-11-28 16:52:01,359 [wrapper] apfmon messages muted
[2025-11-28 11:52:02] 2025-11-28 16:52:01,379 [wrapper] ==== wrapper stdout END ====
[2025-11-28 11:52:02] 2025-11-28 16:52:01,400 [wrapper] ==== wrapper stderr END ====
[2025-11-28 11:52:02]  *** Error codes and diagnostics ***
[2025-11-28 11:52:02]     "exeErrorCode": 0,
[2025-11-28 11:52:02]     "exeErrorDiag": "",
[2025-11-28 11:52:02]     "pilotErrorCode": 0,
[2025-11-28 11:52:02]     "pilotErrorDiag": "",
[2025-11-28 11:52:02]  *** Listing of results directory ***
[2025-11-28 11:52:02] total 1340684
[2025-11-28 11:52:02] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 23:39 pilot3.tar.gz
[2025-11-28 11:52:02] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 23:42 queuedata.json
[2025-11-28 11:52:02] -rwx------. 1 boincer umatlas     36292 Nov 25 23:43 runpilot2-wrapper.sh
[2025-11-28 11:52:02] -rw-r--r--. 1 boincer umatlas       100 Nov 27 04:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 11:52:02] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 04:00 run_atlas
[2025-11-28 11:52:02] -rw-r--r--. 1 boincer umatlas       105 Nov 27 04:00 job.xml
[2025-11-28 11:52:02] -rw-r--r--. 2 boincer umatlas 409047597 Nov 27 04:00 EVNT.47483658._002506.pool.root.1
[2025-11-28 11:52:02] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 04:00 start_atlas.sh
[2025-11-28 11:52:02] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 04:00 shared
[2025-11-28 11:52:02] -rw-r--r--. 2 boincer umatlas    590103 Nov 27 04:00 input.tar.gz
[2025-11-28 11:52:02] -rw-r--r--. 1 boincer umatlas         0 Nov 27 04:00 boinc_lockfile
[2025-11-28 11:52:02] -rw-r--r--. 1 boincer umatlas      2785 Nov 27 04:00 pandaJob.out
[2025-11-28 11:52:02] -rw-------. 1 boincer umatlas        57 Nov 27 04:00 setup.sh.local
[2025-11-28 11:52:02] -rw-------. 1 boincer umatlas    991573 Nov 27 04:01 agis_schedconf.cvmfs.json
[2025-11-28 11:52:02] drwx------. 5 boincer umatlas      4096 Nov 27 04:01 pilot3
[2025-11-28 11:52:02] -rw-r--r--. 1 boincer umatlas       533 Nov 28 11:15 boinc_task_state.xml
[2025-11-28 11:52:02] -rw-------. 1 boincer umatlas 924130545 Nov 28 11:48 HITS.47556161._004888.pool.root.1
[2025-11-28 11:52:02] -rw-r--r--. 1 boincer umatlas      6660 Nov 28 11:48 init_data.xml
[2025-11-28 11:52:02] -rw-------. 1 boincer umatlas      1060 Nov 28 11:50 memory_monitor_summary.json
[2025-11-28 11:52:02] -rw-------. 1 boincer umatlas   1516240 Nov 28 11:50 agis_ddmendpoints.agis.ALL.json
[2025-11-28 11:52:02] -rw-------. 1 boincer umatlas   2817889 Nov 28 11:50 log.47556161._004888.job.log.tgz.1
[2025-11-28 11:52:02] -rw-------. 1 boincer umatlas      8625 Nov 28 11:51 heartbeat.json
[2025-11-28 11:52:02] -rw-------. 1 boincer umatlas        95 Nov 28 11:51 pilot_heartbeat.json
[2025-11-28 11:52:02] -rw-r--r--. 1 boincer umatlas        29 Nov 28 11:51 wrapper_checkpoint.txt
[2025-11-28 11:52:02] -rw-------. 1 boincer umatlas      4822 Nov 28 11:52 pilotlog.txt
[2025-11-28 11:52:02] -rw-------. 1 boincer umatlas  15061199 Nov 28 11:52 log.47556161._004888.job.log.1
[2025-11-28 11:52:02] -rw-------. 1 boincer umatlas       353 Nov 28 11:52 output.list
[2025-11-28 11:52:02] -rw-r--r--. 1 boincer umatlas       620 Nov 28 11:52 runtime_log
[2025-11-28 11:52:02] -rw-------. 1 boincer umatlas  17899520 Nov 28 11:52 result.tar.gz
[2025-11-28 11:52:02] -rw-r--r--. 1 boincer umatlas      9344 Nov 28 11:52 runtime_log.err
[2025-11-28 11:52:02] -rw-------. 1 boincer umatlas       663 Nov 28 11:52 iWaLDmtYMi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmZzMKDms1txim.diag
[2025-11-28 11:52:02] -rw-r--r--. 1 boincer umatlas     21891 Nov 28 11:52 stderr.txt
[2025-11-28 11:52:02] -rw-r--r--. 1 boincer umatlas      8192 Nov 28 11:52 boinc_mmap_file
[2025-11-28 11:52:02] HITS file was successfully produced:
[2025-11-28 11:52:02] -rw-------. 1 boincer umatlas 924130545 Nov 28 11:48 shared/HITS.pool.root.1
[2025-11-28 11:52:02]  *** Contents of shared directory: ***
[2025-11-28 11:52:02] total 1320020
[2025-11-28 11:52:02] -rw-r--r--. 2 boincer umatlas 409047597 Nov 27 04:00 ATLAS.root_0
[2025-11-28 11:52:02] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 04:00 start_atlas.sh
[2025-11-28 11:52:02] -rw-r--r--. 2 boincer umatlas    590103 Nov 27 04:00 input.tar.gz
[2025-11-28 11:52:02] -rw-------. 1 boincer umatlas 924130545 Nov 28 11:48 HITS.pool.root.1
[2025-11-28 11:52:02] -rw-------. 1 boincer umatlas  17899520 Nov 28 11:52 result.tar.gz
11:52:24 (635709): run_atlas exited; CPU time 308013.309342
11:52:24 (635709): called boinc_finish(0)

</stderr_txt>
]]>

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