Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
04:10:55 (15354): wrapper (7.7.26015): starting
04:10:55 (15354): wrapper: running run_atlas (--nthreads 12)
[2025-11-27 04:10:55] Arguments: --nthreads 12
[2025-11-27 04:10:55] Threads: 12
[2025-11-27 04:10:55] Checking for CVMFS
[2025-11-27 04:10:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 04:10:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 04:10:55] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 04:10:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 04:10:55] 2.11.2.0 2924 288878 100712 153357 2 81 19501955 20275200 1 130560 4 131796083 99.966 17407314 14106 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 04:10:55] CVMFS is ok
[2025-11-27 04:10:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 04:10:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 04:10:55] Further information can be found at the LHC@home message board.
[2025-11-27 04:10:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 04:10:55] Checking for apptainer binary...
[2025-11-27 04:10:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 04:10:55] Running /usr/bin/apptainer --version
[2025-11-27 04:10:55] apptainer version 1.3.2-1.el7
[2025-11-27 04:10:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 04:10:57] c-205-28.aglt2.org
[2025-11-27 04:10:57] apptainer works
[2025-11-27 04:10:57] Set ATHENA_PROC_NUMBER=12
[2025-11-27 04:10:57] Set ATHENA_CORE_NUMBER=12
[2025-11-27 04:10:57] Starting ATLAS job with PandaID=6897864799
[2025-11-27 04:10:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 11:22:17]  *** The last 200 lines of the pilot log: ***
[2025-11-27 11:22:17] 2025-11-27 16:21:42,154 | INFO     | time since job start (25830s) is within the limit (172800.0s)
[2025-11-27 11:22:17] 2025-11-27 16:21:43,537 | INFO     | monitor loop #1934: job 0:6897864799 is in state 'finished'
[2025-11-27 11:22:17] 2025-11-27 16:21:43,537 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 11:22:17] 2025-11-27 16:21:44,159 | INFO     | time since job start (25832s) is within the limit (172800.0s)
[2025-11-27 11:22:17] 2025-11-27 16:21:44,950 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-27 11:22:17] 2025-11-27 16:21:44,954 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2025-11-27 11:22:17] 2025-11-27 16:21:44,956 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6897864799/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 11:22:17] 2025-11-27 16:21:44,956 | INFO     | extracted standard info from prmon json
[2025-11-27 11:22:17] 2025-11-27 16:21:44,957 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 11:22:17] 2025-11-27 16:21:44,957 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 11:22:17] 2025-11-27 16:21:44,965 | INFO     | fitting pss+swap vs Time
[2025-11-27 11:22:17] 2025-11-27 16:21:44,966 | INFO     | sum of square deviations: 23469255493.3947
[2025-11-27 11:22:17] 2025-11-27 16:21:44,970 | INFO     | sum of deviations: 398616159544.34485
[2025-11-27 11:22:17] 2025-11-27 16:21:44,970 | INFO     | mean x: 1764247574.2600472
[2025-11-27 11:22:17] 2025-11-27 16:21:44,970 | INFO     | mean y: 3410078.742316785
[2025-11-27 11:22:17] 2025-11-27 16:21:44,970 | INFO     | intersect: -29961647514.79296
[2025-11-27 11:22:17] 2025-11-27 16:21:44,971 | INFO     | chi2: 5.996276432525911
[2025-11-27 11:22:17] 2025-11-27 16:21:44,971 | INFO     | sum of square deviations: 22646845715.552895
[2025-11-27 11:22:17] 2025-11-27 16:21:44,975 | INFO     | sum of deviations: 547135649690.2103
[2025-11-27 11:22:17] 2025-11-27 16:21:44,975 | INFO     | mean x: 1764247421.7631578
[2025-11-27 11:22:17] 2025-11-27 16:21:44,975 | INFO     | mean y: 3437589.688995215
[2025-11-27 11:22:17] 2025-11-27 16:21:44,975 | INFO     | intersect: -42619834165.00613
[2025-11-27 11:22:17] 2025-11-27 16:21:44,976 | INFO     | chi2: 3.3585970111009638
[2025-11-27 11:22:17] 2025-11-27 16:21:44,976 | INFO     | current chi2=3.3585970111009638 (change=43.98862279125837 %)
[2025-11-27 11:22:17] 2025-11-27 16:21:44,976 | INFO     | sum of square deviations: 21843878162.70209
[2025-11-27 11:22:17] 2025-11-27 16:21:44,980 | INFO     | sum of deviations: 614698631751.8279
[2025-11-27 11:22:17] 2025-11-27 16:21:44,980 | INFO     | mean x: 1764247269.2663438
[2025-11-27 11:22:17] 2025-11-27 16:21:44,980 | INFO     | mean y: 3450399.210653753
[2025-11-27 11:22:17] 2025-11-27 16:21:44,980 | INFO     | intersect: -49643428896.318695
[2025-11-27 11:22:17] 2025-11-27 16:21:44,981 | INFO     | chi2: 2.660918200219593
[2025-11-27 11:22:17] 2025-11-27 16:21:44,981 | INFO     | current chi2=2.660918200219593 (change=20.772924187551407 %)
[2025-11-27 11:22:17] 2025-11-27 16:21:44,981 | INFO     | right removable region: 412
[2025-11-27 11:22:17] 2025-11-27 16:21:44,982 | INFO     | sum of square deviations: 22646778615.552906
[2025-11-27 11:22:17] 2025-11-27 16:21:44,985 | INFO     | sum of deviations: 254193064658.3158
[2025-11-27 11:22:17] 2025-11-27 16:21:44,986 | INFO     | mean x: 1764247726.7631578
[2025-11-27 11:22:17] 2025-11-27 16:21:44,986 | INFO     | mean y: 3436783.124401914
[2025-11-27 11:22:17] 2025-11-27 16:21:44,986 | INFO     | intersect: -19798917630.955925
[2025-11-27 11:22:17] 2025-11-27 16:21:44,986 | INFO     | chi2: 3.5512011002174986
[2025-11-27 11:22:17] 2025-11-27 16:21:44,986 | INFO     | current chi2=3.5512011002174986 (change=40.776561251336986 %)
[2025-11-27 11:22:17] 2025-11-27 16:21:44,987 | INFO     | sum of square deviations: 21843743962.702095
[2025-11-27 11:22:17] 2025-11-27 16:21:44,990 | INFO     | sum of deviations: 214690565341.5451
[2025-11-27 11:22:17] 2025-11-27 16:21:44,991 | INFO     | mean x: 1764247879.2663438
[2025-11-27 11:22:17] 2025-11-27 16:21:44,991 | INFO     | mean y: 3444280.5859564166
[2025-11-27 11:22:17] 2025-11-27 16:21:44,991 | INFO     | intersect: -17336411709.71743
[2025-11-27 11:22:17] 2025-11-27 16:21:44,991 | INFO     | chi2: 3.4608069745800503
[2025-11-27 11:22:17] 2025-11-27 16:21:44,991 | INFO     | current chi2=3.4608069745800503 (change=2.5454521748124033 %)
[2025-11-27 11:22:17] 2025-11-27 16:21:44,992 | INFO     | left removable region: 20
[2025-11-27 11:22:17] 2025-11-27 16:21:44,992 | INFO     | sum of square deviations: 18678231737.691383
[2025-11-27 11:22:17] 2025-11-27 16:21:44,995 | INFO     | sum of deviations: 373412234762.0642
[2025-11-27 11:22:17] 2025-11-27 16:21:44,995 | INFO     | mean x: 1764247848.7780612
[2025-11-27 11:22:17] 2025-11-27 16:21:44,996 | INFO     | mean y: 3497214.426020408
[2025-11-27 11:22:17] 2025-11-27 16:21:44,996 | INFO     | intersect: -35267064856.87454
[2025-11-27 11:22:17] 2025-11-27 16:21:44,996 | INFO     | chi2: 0.05810355509621102
[2025-11-27 11:22:17] 2025-11-27 16:21:44,996 | INFO     | current memory leak: 19.99 B/s (using 392 data points, chi2=0.06)
[2025-11-27 11:22:17] 2025-11-27 16:21:44,997 | INFO     | could have reported an average CPU frequency of 2374 MHz (18 samples)
[2025-11-27 11:22:17] 2025-11-27 16:21:44,997 | INFO     | ..............................
[2025-11-27 11:22:17] 2025-11-27 16:21:44,997 | INFO     | . Timing measurements:
[2025-11-27 11:22:17] 2025-11-27 16:21:44,997 | INFO     | . get job = 0 s
[2025-11-27 11:22:17] 2025-11-27 16:21:44,997 | INFO     | . initial setup = 2 s
[2025-11-27 11:22:17] 2025-11-27 16:21:44,997 | INFO     | . payload setup = 8 s
[2025-11-27 11:22:17] 2025-11-27 16:21:44,997 | INFO     | . stage-in = 0 s
[2025-11-27 11:22:17] 2025-11-27 16:21:44,997 | INFO     | . payload execution = 25792 s
[2025-11-27 11:22:17] 2025-11-27 16:21:44,998 | INFO     | . stage-out = 3 s
[2025-11-27 11:22:17] 2025-11-27 16:21:44,998 | INFO     | . log creation = 0 s
[2025-11-27 11:22:17] 2025-11-27 16:21:44,998 | INFO     | ..............................
[2025-11-27 11:22:17] 2025-11-27 16:21:45,294 | INFO     | 
[2025-11-27 11:22:17] 2025-11-27 16:21:45,294 | INFO     | job summary report
[2025-11-27 11:22:17] 2025-11-27 16:21:45,294 | INFO     | --------------------------------------------------
[2025-11-27 11:22:17] 2025-11-27 16:21:45,295 | INFO     | PanDA job id: 6897864799
[2025-11-27 11:22:17] 2025-11-27 16:21:45,295 | INFO     | task id: 47556161
[2025-11-27 11:22:17] 2025-11-27 16:21:45,295 | INFO     | errors: (none)
[2025-11-27 11:22:17] 2025-11-27 16:21:45,295 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 11:22:17] 2025-11-27 16:21:45,295 | INFO     | pilot state: finished 
[2025-11-27 11:22:17] 2025-11-27 16:21:45,295 | INFO     | transexitcode: 0
[2025-11-27 11:22:17] 2025-11-27 16:21:45,296 | INFO     | exeerrorcode: 0
[2025-11-27 11:22:17] 2025-11-27 16:21:45,296 | INFO     | exeerrordiag: 
[2025-11-27 11:22:17] 2025-11-27 16:21:45,296 | INFO     | exitcode: 0
[2025-11-27 11:22:17] 2025-11-27 16:21:45,296 | INFO     | exitmsg: OK
[2025-11-27 11:22:17] 2025-11-27 16:21:45,296 | INFO     | cpuconsumptiontime: 295159 s
[2025-11-27 11:22:17] 2025-11-27 16:21:45,296 | INFO     | nevents: 1000
[2025-11-27 11:22:17] 2025-11-27 16:21:45,296 | INFO     | neventsw: 0
[2025-11-27 11:22:17] 2025-11-27 16:21:45,297 | INFO     | pid: 25458
[2025-11-27 11:22:17] 2025-11-27 16:21:45,297 | INFO     | pgrp: 25458
[2025-11-27 11:22:17] 2025-11-27 16:21:45,297 | INFO     | corecount: 12
[2025-11-27 11:22:17] 2025-11-27 16:21:45,297 | INFO     | event service: False
[2025-11-27 11:22:17] 2025-11-27 16:21:45,297 | INFO     | sizes: {0: 2284151, 1: 2284293, 6: 2284555, 11: 2284583, 25804: 2321820, 25807: 2330814, 25809: 2330998, 25816: 2331244}
[2025-11-27 11:22:17] 2025-11-27 16:21:45,297 | INFO     | --------------------------------------------------
[2025-11-27 11:22:17] 2025-11-27 16:21:45,298 | INFO     | 
[2025-11-27 11:22:17] 2025-11-27 16:21:45,298 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-27 11:22:17] 2025-11-27 16:21:45,401 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 11:22:17] 2025-11-27 16:21:45,401 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 11:22:17] 2025-11-27 16:21:45,401 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 11:22:17] 2025-11-27 16:21:45,401 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 11:22:17] 2025-11-27 16:21:45,401 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 11:22:17] 2025-11-27 16:21:45,402 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 11:22:17] 2025-11-27 16:21:45,402 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 11:22:17] 2025-11-27 16:21:45,402 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 11:22:17] 2025-11-27 16:21:45,402 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 11:22:17] 2025-11-27 16:21:45,402 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 11:22:17] 2025-11-27 16:21:45,403 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 11:22:17] 2025-11-27 16:21:45,403 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 11:22:17] 2025-11-27 16:21:45,403 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 11:22:17] 2025-11-27 16:21:45,403 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 11:22:17] 2025-11-27 16:21:45,403 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 11:22:17] 2025-11-27 16:21:45,403 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 11:22:17] 2025-11-27 16:21:45,404 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 11:22:17] 2025-11-27 16:21:45,404 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 11:22:17] 2025-11-27 16:21:45,404 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 11:22:17] 2025-11-27 16:21:45,404 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 11:22:17] 2025-11-27 16:21:45,404 | INFO     | job 6897864799 has completed (purged errors)
[2025-11-27 11:22:17] 2025-11-27 16:21:45,404 | INFO     | overall cleanup function is called
[2025-11-27 11:22:17] 2025-11-27 16:21:46,420 | INFO     | --- collectZombieJob: --- 10, [25458]
[2025-11-27 11:22:17] 2025-11-27 16:21:46,420 | INFO     | zombie collector waiting for pid 25458
[2025-11-27 11:22:17] 2025-11-27 16:21:46,420 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 11:22:17] 2025-11-27 16:21:46,421 | INFO     | collected zombie processes
[2025-11-27 11:22:17] 2025-11-27 16:21:46,421 | INFO     | will attempt to kill all subprocesses of pid=25458
[2025-11-27 11:22:17] 2025-11-27 16:21:46,509 | INFO     | process IDs to be killed: [25458] (in reverse order)
[2025-11-27 11:22:17] 2025-11-27 16:21:46,561 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 11:22:17] 2025-11-27 16:21:46,561 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 11:22:17] 2025-11-27 16:21:46,565 | INFO     | did not find any defunct processes belonging to 25458
[2025-11-27 11:22:17] 2025-11-27 16:21:46,567 | INFO     | did not find any defunct processes belonging to 25458
[2025-11-27 11:22:17] 2025-11-27 16:21:46,569 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 11:22:17] 2025-11-27 16:21:46,569 | INFO     | ready for new job
[2025-11-27 11:22:17] 2025-11-27 16:21:46,569 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 11:22:17] 2025-11-27 16:21:46,571 | INFO     | ***************************************
[2025-11-27 11:22:17] 2025-11-27 16:21:46,571 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 11:22:17] 2025-11-27 16:21:46,571 | INFO     | ***************************************
[2025-11-27 11:22:17] 2025-11-27 16:21:46,571 | INFO     | 
[2025-11-27 11:22:17] 2025-11-27 16:21:46,572 | INFO     | architecture information:
[2025-11-27 11:22:17] 2025-11-27 16:21:46,572 | INFO     | executing command: cat /etc/os-release
[2025-11-27 11:22:17] 2025-11-27 16:21:46,587 | INFO     | cat /etc/os-release:
[2025-11-27 11:22:17] NAME="CentOS Linux"
[2025-11-27 11:22:17] VERSION="7 (Core)"
[2025-11-27 11:22:17] ID="centos"
[2025-11-27 11:22:17] ID_LIKE="rhel fedora"
[2025-11-27 11:22:17] VERSION_ID="7"
[2025-11-27 11:22:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 11:22:17] ANSI_COLOR="0;31"
[2025-11-27 11:22:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 11:22:17] HOME_URL="https://www.centos.org/"
[2025-11-27 11:22:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 11:22:17] 
[2025-11-27 11:22:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 11:22:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 11:22:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 11:22:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 11:22:17] 
[2025-11-27 11:22:17] 2025-11-27 16:21:46,588 | INFO     | ***************************************
[2025-11-27 11:22:17] 2025-11-27 16:21:47,091 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-27 11:22:17] 2025-11-27 16:21:47,108 | INFO     | sufficient remaining disk space (28243394560 B)
[2025-11-27 11:22:17] 2025-11-27 16:21:47,109 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 11:22:17] 2025-11-27 16:21:47,109 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 11:22:17] 2025-11-27 16:21:47,109 | INFO     | update_server=False
[2025-11-27 11:22:17] 2025-11-27 16:21:47,109 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 11:22:17] 2025-11-27 16:21:47,110 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 11:22:17] 2025-11-27 16:21:47,110 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 11:22:17] 2025-11-27 16:21:47,110 | INFO     | aborting loop
[2025-11-27 11:22:17] 2025-11-27 16:21:47,191 | INFO     | all data control threads have been joined
[2025-11-27 11:22:17] 2025-11-27 16:21:47,292 | INFO     | all job control threads have been joined
[2025-11-27 11:22:17] 2025-11-27 16:21:47,542 | INFO     | all payload control threads have been joined
[2025-11-27 11:22:17] 2025-11-27 16:21:48,098 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 11:22:17] 2025-11-27 16:21:48,115 | INFO     | [job] retrieve thread has finished
[2025-11-27 11:22:17] 2025-11-27 16:21:48,116 | INFO     | [job] job monitor thread has finished
[2025-11-27 11:22:17] 2025-11-27 16:21:48,150 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 11:22:17] 2025-11-27 16:21:48,196 | INFO     | [data] control thread has finished
[2025-11-27 11:22:17] 2025-11-27 16:21:48,270 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 11:22:17] 2025-11-27 16:21:48,289 | INFO     | [payload] validate_post thread has finished
[2025-11-27 11:22:17] 2025-11-27 16:21:48,298 | INFO     | [job] control thread has finished
[2025-11-27 11:22:17] 2025-11-27 16:21:48,455 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 11:22:17] 2025-11-27 16:21:48,539 | INFO     | [data] copytool_in thread has finished
[2025-11-27 11:22:17] 2025-11-27 16:21:48,548 | INFO     | [payload] control thread has finished
[2025-11-27 11:22:17] 2025-11-27 16:21:48,811 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 11:22:17] 2025-11-27 16:21:49,090 | INFO     | [payload] failed_post thread has finished
[2025-11-27 11:22:17] 2025-11-27 16:21:49,115 | INFO     | [data] copytool_out thread has finished
[2025-11-27 11:22:17] 2025-11-27 16:21:49,228 | INFO     | [job] validate thread has finished
[2025-11-27 11:22:17] 2025-11-27 16:21:50,089 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 11:22:17] 2025-11-27 16:21:51,095 | INFO     | [job] queue monitor thread has finished
[2025-11-27 11:22:17] 2025-11-27 16:21:52,104 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 11:22:17] 2025-11-27 16:21:54,471 | INFO     | [monitor] cgroup control has ended
[2025-11-27 11:22:17] 2025-11-27 16:21:55,176 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140031052044096)>', '<ExcThread(monitor, started 140029942814464)>']
[2025-11-27 11:22:17] 2025-11-27 16:22:00,183 | INFO     | all workflow threads have been joined
[2025-11-27 11:22:17] 2025-11-27 16:22:00,183 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 11:22:17] 2025-11-27 16:22:00,183 | INFO     | traces error code: 0
[2025-11-27 11:22:17] 2025-11-27 16:22:00,183 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 11:22:17] 2025-11-27 16:22:17,355 | INFO     | PID=19074 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 11:22:17] 2025-11-27 16:22:17,356 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 11:22:17] 2025-11-27 16:22:17,356 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 11:22:17] 2025-11-27 16:22:17,356 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 11:22:17] 2025-11-27 16:22:17,356 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 11:22:17] 2025-11-27 16:22:17,356 | INFO     | [monitor] control thread has ended
[2025-11-27 11:22:17] 2025-11-27 16:22:17,444 [wrapper] ==== pilot stdout END ====
[2025-11-27 11:22:17] 2025-11-27 16:22:17,447 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 11:22:17] 2025-11-27 16:22:17,451 [wrapper] pilotpid: 19074
[2025-11-27 11:22:17] 2025-11-27 16:22:17,455 [wrapper] Pilot exit status: 0
[2025-11-27 11:22:17] 2025-11-27 16:22:17,469 [wrapper] pandaids: 6897864799
[2025-11-27 11:22:17] 2025-11-27 16:22:17,508 [wrapper] cleanup supervisor_pilot 12184 19075
[2025-11-27 11:22:17] 2025-11-27 16:22:17,512 [wrapper] Test setup, not cleaning
[2025-11-27 11:22:17] 2025-11-27 16:22:17,516 [wrapper] apfmon messages muted
[2025-11-27 11:22:17] 2025-11-27 16:22:17,520 [wrapper] ==== wrapper stdout END ====
[2025-11-27 11:22:17] 2025-11-27 16:22:17,524 [wrapper] ==== wrapper stderr END ====
[2025-11-27 11:22:17]  *** Error codes and diagnostics ***
[2025-11-27 11:22:17]     "exeErrorCode": 0,
[2025-11-27 11:22:17]     "exeErrorDiag": "",
[2025-11-27 11:22:17]     "pilotErrorCode": 0,
[2025-11-27 11:22:17]     "pilotErrorDiag": "",
[2025-11-27 11:22:17]  *** Listing of results directory ***
[2025-11-27 11:22:17] total 1316172
[2025-11-27 11:22:17] -rw-r--r-- 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-27 11:22:17] -rwx------ 1 boincer umatlas     36292 Nov 25 12:02 runpilot2-wrapper.sh
[2025-11-27 11:22:17] -rw-r--r-- 1 boincer umatlas      5112 Nov 25 12:02 queuedata.json
[2025-11-27 11:22:17] -rw-r--r-- 1 boincer umatlas       100 Nov 27 04:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 11:22:17] -rwxr-xr-x 1 boincer umatlas      7986 Nov 27 04:10 run_atlas
[2025-11-27 11:22:17] -rw-r--r-- 1 boincer umatlas       105 Nov 27 04:10 job.xml
[2025-11-27 11:22:17] -rw-r--r-- 2 boincer umatlas 409807520 Nov 27 04:10 EVNT.47483658._002345.pool.root.1
[2025-11-27 11:22:17] -rw-r--r-- 2 boincer umatlas     15847 Nov 27 04:10 start_atlas.sh
[2025-11-27 11:22:17] drwxrwx--x 2 boincer umatlas      4096 Nov 27 04:10 shared
[2025-11-27 11:22:17] -rw-r--r-- 2 boincer umatlas    590111 Nov 27 04:10 input.tar.gz
[2025-11-27 11:22:17] -rw-r--r-- 1 boincer umatlas         0 Nov 27 04:10 boinc_lockfile
[2025-11-27 11:22:17] -rw-r--r-- 1 boincer umatlas      2786 Nov 27 04:10 pandaJob.out
[2025-11-27 11:22:17] -rw------- 1 boincer umatlas        57 Nov 27 04:10 setup.sh.local
[2025-11-27 11:22:17] -rw------- 1 boincer umatlas    991573 Nov 27 04:11 agis_schedconf.cvmfs.json
[2025-11-27 11:22:17] drwx------ 5 boincer umatlas      4096 Nov 27 04:11 pilot3
[2025-11-27 11:22:17] -rw-r--r-- 1 boincer umatlas       532 Nov 27 11:11 boinc_task_state.xml
[2025-11-27 11:22:17] -rw------- 1 boincer umatlas 922416453 Nov 27 11:21 HITS.47556161._003280.pool.root.1
[2025-11-27 11:22:17] -rw------- 1 boincer umatlas      1061 Nov 27 11:21 memory_monitor_summary.json
[2025-11-27 11:22:17] -rw-r--r-- 1 boincer umatlas      5956 Nov 27 11:21 init_data.xml
[2025-11-27 11:22:17] -rw------- 1 boincer umatlas   1516240 Nov 27 11:21 agis_ddmendpoints.agis.ALL.json
[2025-11-27 11:22:17] -rw------- 1 boincer umatlas   2182767 Nov 27 11:21 log.47556161._003280.job.log.tgz.1
[2025-11-27 11:22:17] -rw------- 1 boincer umatlas      8676 Nov 27 11:21 heartbeat.json
[2025-11-27 11:22:17] -rw-r--r-- 1 boincer umatlas      8192 Nov 27 11:21 boinc_mmap_file
[2025-11-27 11:22:17] -rw-r--r-- 1 boincer umatlas        29 Nov 27 11:21 wrapper_checkpoint.txt
[2025-11-27 11:22:17] -rw------- 1 boincer umatlas       745 Nov 27 11:22 pilotlog.txt
[2025-11-27 11:22:17] -rw------- 1 boincer umatlas        95 Nov 27 11:22 pilot_heartbeat.json
[2025-11-27 11:22:17] -rw------- 1 boincer umatlas   3625588 Nov 27 11:22 log.47556161._003280.job.log.1
[2025-11-27 11:22:17] -rw------- 1 boincer umatlas       353 Nov 27 11:22 output.list
[2025-11-27 11:22:17] -rw-r--r-- 1 boincer umatlas       620 Nov 27 11:22 runtime_log
[2025-11-27 11:22:17] -rw------- 1 boincer umatlas   5826560 Nov 27 11:22 result.tar.gz
[2025-11-27 11:22:17] -rw-r--r-- 1 boincer umatlas      9345 Nov 27 11:22 runtime_log.err
[2025-11-27 11:22:17] -rw------- 1 boincer umatlas       670 Nov 27 11:22 NUCMDmlbBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmEkJKDmHhegcm.diag
[2025-11-27 11:22:17] -rw-r--r-- 1 boincer umatlas     21338 Nov 27 11:22 stderr.txt
[2025-11-27 11:22:17] HITS file was successfully produced:
[2025-11-27 11:22:17] -rw------- 1 boincer umatlas 922416453 Nov 27 11:21 shared/HITS.pool.root.1
[2025-11-27 11:22:17]  *** Contents of shared directory: ***
[2025-11-27 11:22:17] total 1307300
[2025-11-27 11:22:17] -rw-r--r-- 2 boincer umatlas 409807520 Nov 27 04:10 ATLAS.root_0
[2025-11-27 11:22:17] -rw-r--r-- 2 boincer umatlas     15847 Nov 27 04:10 start_atlas.sh
[2025-11-27 11:22:17] -rw-r--r-- 2 boincer umatlas    590111 Nov 27 04:10 input.tar.gz
[2025-11-27 11:22:17] -rw------- 1 boincer umatlas 922416453 Nov 27 11:21 HITS.pool.root.1
[2025-11-27 11:22:17] -rw------- 1 boincer umatlas   5826560 Nov 27 11:22 result.tar.gz
11:22:19 (15354): run_atlas exited; CPU time 288575.168923
11:22:19 (15354): called boinc_finish(0)

</stderr_txt>
]]>

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