Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
03:22:11 (4869): wrapper (7.7.26015): starting
03:22:11 (4869): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 03:22:11] Arguments: --nthreads 8
[2025-11-27 03:22:11] Threads: 8
[2025-11-27 03:22:11] Checking for CVMFS
[2025-11-27 03:22:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 03:22:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 03:22:12] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 03:22:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 03:22:12] 2.11.2.0 8318 118943 137712 153355 2 49 13074473 18432001 1885 130560 0 85294786 99.973 5167565 31806 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 03:22:12] CVMFS is ok
[2025-11-27 03:22:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 03:22:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 03:22:12] Further information can be found at the LHC@home message board.
[2025-11-27 03:22:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 03:22:12] Checking for apptainer binary...
[2025-11-27 03:22:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 03:22:12] Running /usr/bin/apptainer --version
[2025-11-27 03:22:12] apptainer version 1.3.2-1.el7
[2025-11-27 03:22:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 03:22:13] c-206-28.aglt2.org
[2025-11-27 03:22:13] apptainer works
[2025-11-27 03:22:13] Set ATHENA_PROC_NUMBER=8
[2025-11-27 03:22:13] Set ATHENA_CORE_NUMBER=8
[2025-11-27 03:22:13] Starting ATLAS job with PandaID=6897865029
[2025-11-27 03:22:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
04:28:57 (24166): wrapper (7.7.26015): starting
04:28:57 (24166): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 04:28:57] Arguments: --nthreads 8
[2025-11-27 04:28:57] Threads: 8
[2025-11-27 04:28:57] This job has been restarted, cleaning up previous attempt
[2025-11-27 04:28:57] Checking for CVMFS
[2025-11-27 04:28:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 04:28:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 04:28:57] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 04:28:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 04:28:57] 2.11.2.0 8318 119010 124692 153358 3 49 13089847 18432001 1 130560 0 85398568 99.973 5171453 31812 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 04:28:57] CVMFS is ok
[2025-11-27 04:28:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 04:28:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 04:28:57] Further information can be found at the LHC@home message board.
[2025-11-27 04:28:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 04:28:57] Checking for apptainer binary...
[2025-11-27 04:28:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 04:28:57] Running /usr/bin/apptainer --version
[2025-11-27 04:28:58] apptainer version 1.3.2-1.el7
[2025-11-27 04:28:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 04:28:59] c-206-28.aglt2.org
[2025-11-27 04:28:59] apptainer works
[2025-11-27 04:28:59] Set ATHENA_PROC_NUMBER=8
[2025-11-27 04:28:59] Set ATHENA_CORE_NUMBER=8
[2025-11-27 04:28:59] Starting ATLAS job with PandaID=6897865029
[2025-11-27 04:28:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 23:59:13]  *** The last 200 lines of the pilot log: ***
[2025-11-27 23:59:13] 2025-11-28 04:58:23,641 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 1784.5416666666667
[2025-11-27 23:59:13] 2025-11-28 04:58:23,644 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6897865029/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 23:59:13] 2025-11-28 04:58:23,645 | INFO     | extracted standard info from prmon json
[2025-11-27 23:59:13] 2025-11-28 04:58:23,645 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 23:59:13] 2025-11-28 04:58:23,645 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 23:59:13] 2025-11-28 04:58:23,662 | INFO     | fitting pss+swap vs Time
[2025-11-27 23:59:13] 2025-11-28 04:58:23,662 | INFO     | monitor loop #4995: job 0:6897865029 is in state 'finished'
[2025-11-27 23:59:13] 2025-11-28 04:58:23,664 | INFO     | sum of square deviations: 471595535020.0188
[2025-11-27 23:59:13] 2025-11-28 04:58:23,664 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:59:13] 2025-11-28 04:58:23,690 | INFO     | sum of deviations: 2327811730186.214
[2025-11-27 23:59:13] 2025-11-28 04:58:23,690 | INFO     | mean x: 1764270823.2843478
[2025-11-27 23:59:13] 2025-11-28 04:58:23,690 | INFO     | mean y: 2863567.500869565
[2025-11-27 23:59:13] 2025-11-28 04:58:23,690 | INFO     | intersect: -8705637706.779133
[2025-11-27 23:59:13] 2025-11-28 04:58:23,691 | INFO     | chi2: 5.602424951558693
[2025-11-27 23:59:13] 2025-11-28 04:58:23,692 | INFO     | sum of square deviations: 465471239479.42926
[2025-11-27 23:59:13] 2025-11-28 04:58:23,718 | INFO     | sum of deviations: 2704497384034.6455
[2025-11-27 23:59:13] 2025-11-28 04:58:23,718 | INFO     | mean x: 1764270670.787773
[2025-11-27 23:59:13] 2025-11-28 04:58:23,718 | INFO     | mean y: 2872943.0890829694
[2025-11-27 23:59:13] 2025-11-28 04:58:23,718 | INFO     | intersect: -10247954625.142334
[2025-11-27 23:59:13] 2025-11-28 04:58:23,719 | INFO     | chi2: 2.4694151511580276
[2025-11-27 23:59:13] 2025-11-28 04:58:23,719 | INFO     | current chi2=2.4694151511580276 (change=55.92238767123524 %)
[2025-11-27 23:59:13] 2025-11-28 04:58:23,720 | INFO     | sum of square deviations: 459400200751.3123
[2025-11-27 23:59:13] 2025-11-28 04:58:23,748 | INFO     | sum of deviations: 2743234086815.247
[2025-11-27 23:59:13] 2025-11-28 04:58:23,748 | INFO     | mean x: 1764270518.291228
[2025-11-27 23:59:13] 2025-11-28 04:58:23,748 | INFO     | mean y: 2873913.0745614036
[2025-11-27 23:59:13] 2025-11-28 04:58:23,748 | INFO     | intersect: -10532182484.864712
[2025-11-27 23:59:13] 2025-11-28 04:58:23,749 | INFO     | chi2: 2.3265589927534176
[2025-11-27 23:59:13] 2025-11-28 04:58:23,749 | INFO     | current chi2=2.3265589927534176 (change=5.785019920106096 %)
[2025-11-27 23:59:13] 2025-11-28 04:58:23,750 | INFO     | right removable region: 1139
[2025-11-27 23:59:13] 2025-11-28 04:58:23,751 | INFO     | sum of square deviations: 465470689259.42865
[2025-11-27 23:59:13] 2025-11-28 04:58:23,780 | INFO     | sum of deviations: 2046271594904.0583
[2025-11-27 23:59:13] 2025-11-28 04:58:23,781 | INFO     | mean x: 1764270975.787773
[2025-11-27 23:59:13] 2025-11-28 04:58:23,781 | INFO     | mean y: 2870568.2183406116
[2025-11-27 23:59:13] 2025-11-28 04:58:23,781 | INFO     | intersect: -7753101325.977696
[2025-11-27 23:59:13] 2025-11-28 04:58:23,782 | INFO     | chi2: 3.6422169941790314
[2025-11-27 23:59:13] 2025-11-28 04:58:23,782 | INFO     | current chi2=3.6422169941790314 (change=34.98856253012899 %)
[2025-11-27 23:59:13] 2025-11-28 04:58:23,783 | INFO     | sum of square deviations: 459399379815.62805
[2025-11-27 23:59:13] 2025-11-28 04:58:23,810 | INFO     | sum of deviations: 1954884675150.295
[2025-11-27 23:59:13] 2025-11-28 04:58:23,810 | INFO     | mean x: 1764271128.2877192
[2025-11-27 23:59:13] 2025-11-28 04:58:23,811 | INFO     | mean y: 2872863.3710526316
[2025-11-27 23:59:13] 2025-11-28 04:58:23,811 | INFO     | intersect: -7504639647.603509
[2025-11-27 23:59:13] 2025-11-28 04:58:23,812 | INFO     | chi2: 3.5556412873216616
[2025-11-27 23:59:13] 2025-11-28 04:58:23,812 | INFO     | current chi2=3.5556412873216616 (change=2.377005735675128 %)
[2025-11-27 23:59:13] 2025-11-28 04:58:23,812 | INFO     | left removable region: 20
[2025-11-27 23:59:13] 2025-11-28 04:58:23,813 | INFO     | sum of square deviations: 434476715029.5446
[2025-11-27 23:59:13] 2025-11-28 04:58:23,837 | INFO     | sum of deviations: 2227067156020.111
[2025-11-27 23:59:13] 2025-11-28 04:58:23,837 | INFO     | mean x: 1764271097.7962468
[2025-11-27 23:59:13] 2025-11-28 04:58:23,838 | INFO     | mean y: 2886858.2636282393
[2025-11-27 23:59:13] 2025-11-28 04:58:23,838 | INFO     | intersect: -9040521177.884827
[2025-11-27 23:59:13] 2025-11-28 04:58:23,839 | INFO     | chi2: 0.19698577907828954
[2025-11-27 23:59:13] 2025-11-28 04:58:23,839 | INFO     | current memory leak: 5.13 B/s (using 1119 data points, chi2=0.20)
[2025-11-27 23:59:13] 2025-11-28 04:58:23,839 | INFO     | could have reported an average CPU frequency of 2552 MHz (42 samples)
[2025-11-27 23:59:13] 2025-11-28 04:58:23,840 | INFO     | ..............................
[2025-11-27 23:59:13] 2025-11-28 04:58:23,840 | INFO     | . Timing measurements:
[2025-11-27 23:59:13] 2025-11-28 04:58:23,840 | INFO     | . get job = 0 s
[2025-11-27 23:59:13] 2025-11-28 04:58:23,840 | INFO     | . initial setup = 1 s
[2025-11-27 23:59:13] 2025-11-28 04:58:23,840 | INFO     | . payload setup = 6 s
[2025-11-27 23:59:13] 2025-11-28 04:58:23,840 | INFO     | . stage-in = 0 s
[2025-11-27 23:59:13] 2025-11-28 04:58:23,840 | INFO     | . payload execution = 70118 s
[2025-11-27 23:59:13] 2025-11-28 04:58:23,840 | INFO     | . stage-out = 3 s
[2025-11-27 23:59:13] 2025-11-28 04:58:23,840 | INFO     | . log creation = 0 s
[2025-11-27 23:59:13] 2025-11-28 04:58:23,841 | INFO     | ..............................
[2025-11-27 23:59:13] 2025-11-28 04:58:23,923 | INFO     | 
[2025-11-27 23:59:13] 2025-11-28 04:58:23,923 | INFO     | job summary report
[2025-11-27 23:59:13] 2025-11-28 04:58:23,923 | INFO     | --------------------------------------------------
[2025-11-27 23:59:13] 2025-11-28 04:58:23,923 | INFO     | PanDA job id: 6897865029
[2025-11-27 23:59:13] 2025-11-28 04:58:23,923 | INFO     | task id: 47556173
[2025-11-27 23:59:13] 2025-11-28 04:58:23,923 | INFO     | errors: (none)
[2025-11-27 23:59:13] 2025-11-28 04:58:23,923 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 23:59:13] 2025-11-28 04:58:23,923 | INFO     | pilot state: finished 
[2025-11-27 23:59:13] 2025-11-28 04:58:23,923 | INFO     | transexitcode: 0
[2025-11-27 23:59:13] 2025-11-28 04:58:23,924 | INFO     | exeerrorcode: 0
[2025-11-27 23:59:13] 2025-11-28 04:58:23,924 | INFO     | exeerrordiag: 
[2025-11-27 23:59:13] 2025-11-28 04:58:23,924 | INFO     | exitcode: 0
[2025-11-27 23:59:13] 2025-11-28 04:58:23,924 | INFO     | exitmsg: OK
[2025-11-27 23:59:13] 2025-11-28 04:58:23,924 | INFO     | cpuconsumptiontime: 541956 s
[2025-11-27 23:59:13] 2025-11-28 04:58:23,924 | INFO     | nevents: 1000
[2025-11-27 23:59:13] 2025-11-28 04:58:23,924 | INFO     | neventsw: 0
[2025-11-27 23:59:13] 2025-11-28 04:58:23,924 | INFO     | pid: 22985
[2025-11-27 23:59:13] 2025-11-28 04:58:23,924 | INFO     | pgrp: 22985
[2025-11-27 23:59:13] 2025-11-28 04:58:23,924 | INFO     | corecount: 8
[2025-11-27 23:59:13] 2025-11-28 04:58:23,925 | INFO     | event service: False
[2025-11-27 23:59:13] 2025-11-28 04:58:23,925 | INFO     | sizes: {0: 2283435, 1: 2284291, 5: 2284553, 12: 2284609, 70128: 2341070, 70132: 2350064, 70133: 2350248, 70137: 2350494}
[2025-11-27 23:59:13] 2025-11-28 04:58:23,925 | INFO     | --------------------------------------------------
[2025-11-27 23:59:13] 2025-11-28 04:58:23,925 | INFO     | 
[2025-11-27 23:59:13] 2025-11-28 04:58:23,925 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-27 23:59:13] 2025-11-28 04:58:23,947 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 23:59:13] 2025-11-28 04:58:23,947 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 23:59:13] 2025-11-28 04:58:23,947 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 23:59:13] 2025-11-28 04:58:23,947 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 23:59:13] 2025-11-28 04:58:23,948 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 23:59:13] 2025-11-28 04:58:23,948 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 23:59:13] 2025-11-28 04:58:23,948 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 23:59:13] 2025-11-28 04:58:23,948 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 23:59:13] 2025-11-28 04:58:23,948 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 23:59:13] 2025-11-28 04:58:23,948 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 23:59:13] 2025-11-28 04:58:23,948 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 23:59:13] 2025-11-28 04:58:23,948 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 23:59:13] 2025-11-28 04:58:23,948 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 23:59:13] 2025-11-28 04:58:23,949 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 23:59:13] 2025-11-28 04:58:23,949 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 23:59:13] 2025-11-28 04:58:23,949 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 23:59:13] 2025-11-28 04:58:23,949 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 23:59:13] 2025-11-28 04:58:23,949 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 23:59:13] 2025-11-28 04:58:23,949 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 23:59:13] 2025-11-28 04:58:23,949 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 23:59:13] 2025-11-28 04:58:23,949 | INFO     | job 6897865029 has completed (purged errors)
[2025-11-27 23:59:13] 2025-11-28 04:58:23,949 | INFO     | overall cleanup function is called
[2025-11-27 23:59:13] 2025-11-28 04:58:24,963 | INFO     | --- collectZombieJob: --- 10, [22985]
[2025-11-27 23:59:13] 2025-11-28 04:58:24,963 | INFO     | zombie collector waiting for pid 22985
[2025-11-27 23:59:13] 2025-11-28 04:58:24,963 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 23:59:13] 2025-11-28 04:58:24,963 | INFO     | collected zombie processes
[2025-11-27 23:59:13] 2025-11-28 04:58:24,963 | INFO     | will attempt to kill all subprocesses of pid=22985
[2025-11-27 23:59:13] 2025-11-28 04:58:25,073 | INFO     | process IDs to be killed: [22985] (in reverse order)
[2025-11-27 23:59:13] 2025-11-28 04:58:25,132 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 23:59:13] 2025-11-28 04:58:25,133 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 23:59:13] 2025-11-28 04:58:25,137 | INFO     | did not find any defunct processes belonging to 22985
[2025-11-27 23:59:13] 2025-11-28 04:58:25,141 | INFO     | did not find any defunct processes belonging to 22985
[2025-11-27 23:59:13] 2025-11-28 04:58:25,143 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 23:59:13] 2025-11-28 04:58:25,143 | INFO     | ready for new job
[2025-11-27 23:59:13] 2025-11-28 04:58:25,143 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 23:59:13] 2025-11-28 04:58:25,147 | INFO     | ***************************************
[2025-11-27 23:59:13] 2025-11-28 04:58:25,147 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 23:59:13] 2025-11-28 04:58:25,148 | INFO     | ***************************************
[2025-11-27 23:59:13] 2025-11-28 04:58:25,148 | INFO     | 
[2025-11-27 23:59:13] 2025-11-28 04:58:25,149 | INFO     | architecture information:
[2025-11-27 23:59:13] 2025-11-28 04:58:25,149 | INFO     | executing command: cat /etc/os-release
[2025-11-27 23:59:13] 2025-11-28 04:58:25,163 | INFO     | cat /etc/os-release:
[2025-11-27 23:59:13] NAME="CentOS Linux"
[2025-11-27 23:59:13] VERSION="7 (Core)"
[2025-11-27 23:59:13] ID="centos"
[2025-11-27 23:59:13] ID_LIKE="rhel fedora"
[2025-11-27 23:59:13] VERSION_ID="7"
[2025-11-27 23:59:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 23:59:13] ANSI_COLOR="0;31"
[2025-11-27 23:59:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 23:59:13] HOME_URL="https://www.centos.org/"
[2025-11-27 23:59:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 23:59:13] 
[2025-11-27 23:59:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 23:59:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 23:59:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 23:59:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 23:59:13] 
[2025-11-27 23:59:13] 2025-11-28 04:58:25,164 | INFO     | ***************************************
[2025-11-27 23:59:13] 2025-11-28 04:58:25,667 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-27 23:59:13] 2025-11-28 04:58:25,680 | INFO     | sufficient remaining disk space (24159191040 B)
[2025-11-27 23:59:13] 2025-11-28 04:58:25,680 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 23:59:13] 2025-11-28 04:58:25,681 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 23:59:13] 2025-11-28 04:58:25,681 | INFO     | update_server=False
[2025-11-27 23:59:13] 2025-11-28 04:58:25,681 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 23:59:13] 2025-11-28 04:58:25,681 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 23:59:13] 2025-11-28 04:58:25,681 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 23:59:13] 2025-11-28 04:58:25,682 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 23:59:13] 2025-11-28 04:58:25,740 | INFO     | all data control threads have been joined
[2025-11-27 23:59:13] 2025-11-28 04:58:26,133 | INFO     | all job control threads have been joined
[2025-11-27 23:59:13] 2025-11-28 04:58:26,172 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 23:59:13] 2025-11-28 04:58:26,173 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 23:59:13] 2025-11-28 04:58:26,173 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 23:59:13] 2025-11-28 04:58:26,173 | INFO     | will abort loop
[2025-11-27 23:59:13] 2025-11-28 04:58:26,686 | INFO     | [job] retrieve thread has finished
[2025-11-27 23:59:13] 2025-11-28 04:58:26,687 | INFO     | [job] queue monitor thread has finished
[2025-11-27 23:59:13] 2025-11-28 04:58:26,741 | INFO     | [data] control thread has finished
[2025-11-27 23:59:13] 2025-11-28 04:58:26,750 | INFO     | all payload control threads have been joined
[2025-11-27 23:59:13] 2025-11-28 04:58:27,138 | INFO     | [job] control thread has finished
[2025-11-27 23:59:13] 2025-11-28 04:58:27,153 | INFO     | [data] copytool_in thread has finished
[2025-11-27 23:59:13] 2025-11-28 04:58:27,178 | INFO     | [job] job monitor thread has finished
[2025-11-27 23:59:13] 2025-11-28 04:58:27,226 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 23:59:13] 2025-11-28 04:58:27,406 | INFO     | [job] validate thread has finished
[2025-11-27 23:59:13] 2025-11-28 04:58:27,416 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 23:59:13] 2025-11-28 04:58:27,506 | INFO     | [payload] validate_post thread has finished
[2025-11-27 23:59:13] 2025-11-28 04:58:27,687 | INFO     | [data] copytool_out thread has finished
[2025-11-27 23:59:13] 2025-11-28 04:58:27,755 | INFO     | [payload] control thread has finished
[2025-11-27 23:59:13] 2025-11-28 04:58:27,927 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 23:59:13] 2025-11-28 04:58:27,953 | INFO     | [payload] failed_post thread has finished
[2025-11-27 23:59:13] 2025-11-28 04:58:28,156 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 23:59:13] 2025-11-28 04:58:29,686 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 23:59:13] 2025-11-28 04:58:56,289 | INFO     | PID=2916 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-27 23:59:13] 2025-11-28 04:58:56,290 | INFO     | .. there are 3 such processes running
[2025-11-27 23:59:13] 2025-11-28 04:58:56,290 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 23:59:13] 2025-11-28 04:58:56,291 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 23:59:13] 2025-11-28 04:58:56,291 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 23:59:13] 2025-11-28 04:59:07,284 | INFO     | [monitor] cgroup control has ended
[2025-11-27 23:59:13] 2025-11-28 04:59:08,453 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140278030837568)>', '<ExcThread(monitor, started 140277289301760)>']
[2025-11-27 23:59:13] 2025-11-28 04:59:09,357 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 23:59:13] 2025-11-28 04:59:09,357 | INFO     | [monitor] control thread has ended
[2025-11-27 23:59:13] 2025-11-28 04:59:13,469 | INFO     | all workflow threads have been joined
[2025-11-27 23:59:13] 2025-11-28 04:59:13,469 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 23:59:13] 2025-11-28 04:59:13,469 | INFO     | traces error code: 0
[2025-11-27 23:59:13] 2025-11-28 04:59:13,470 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 23:59:13] 2025-11-28 04:59:13,559 [wrapper] ==== pilot stdout END ====
[2025-11-27 23:59:13] 2025-11-28 04:59:13,562 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 23:59:13] 2025-11-28 04:59:13,565 [wrapper] pilotpid: 2916
[2025-11-27 23:59:13] 2025-11-28 04:59:13,569 [wrapper] Pilot exit status: 0
[2025-11-27 23:59:13] 2025-11-28 04:59:13,579 [wrapper] pandaids: 6897865029 6897865029
[2025-11-27 23:59:13] 2025-11-28 04:59:13,612 [wrapper] cleanup supervisor_pilot 17741 2919
[2025-11-27 23:59:13] 2025-11-28 04:59:13,615 [wrapper] Test setup, not cleaning
[2025-11-27 23:59:13] 2025-11-28 04:59:13,618 [wrapper] apfmon messages muted
[2025-11-27 23:59:13] 2025-11-28 04:59:13,620 [wrapper] ==== wrapper stdout END ====
[2025-11-27 23:59:13] 2025-11-28 04:59:13,622 [wrapper] ==== wrapper stderr END ====
[2025-11-27 23:59:13]  *** Error codes and diagnostics ***
[2025-11-27 23:59:13]     "exeErrorCode": 0,
[2025-11-27 23:59:13]     "exeErrorDiag": "",
[2025-11-27 23:59:13]     "pilotErrorCode": 0,
[2025-11-27 23:59:13]     "pilotErrorDiag": "",
[2025-11-27 23:59:13]  *** Listing of results directory ***
[2025-11-27 23:59:13] total 1720460
[2025-11-27 23:59:13] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-27 23:59:13] -rw-r--r-- 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-27 23:59:13] -rwx------ 1 boincer umatlas     36292 Nov 25 12:02 runpilot2-wrapper.sh
[2025-11-27 23:59:13] -rw-r--r-- 1 boincer umatlas      5112 Nov 25 12:02 queuedata.json
[2025-11-27 23:59:13] -rw-r--r-- 1 boincer umatlas       100 Nov 27 03:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 23:59:13] -rwxr-xr-x 1 boincer umatlas      7986 Nov 27 03:22 run_atlas
[2025-11-27 23:59:13] -rw-r--r-- 1 boincer umatlas       105 Nov 27 03:22 job.xml
[2025-11-27 23:59:13] -rw-r--r-- 3 boincer umatlas 408466089 Nov 27 03:22 EVNT.47483658._003131.pool.root.1
[2025-11-27 23:59:13] -rw-r--r-- 3 boincer umatlas 408466089 Nov 27 03:22 ATLAS.root_0
[2025-11-27 23:59:13] -rw-r--r-- 2 boincer umatlas     15847 Nov 27 03:22 start_atlas.sh
[2025-11-27 23:59:13] drwxrwx--x 2 boincer umatlas      4096 Nov 27 03:22 shared
[2025-11-27 23:59:13] -rw-r--r-- 2 boincer umatlas    590107 Nov 27 03:22 input.tar.gz
[2025-11-27 23:59:13] -rw-r--r-- 1 boincer umatlas         0 Nov 27 03:22 boinc_lockfile
[2025-11-27 23:59:13] -rw-r--r-- 1 boincer umatlas      2785 Nov 27 04:28 pandaJob.out
[2025-11-27 23:59:13] -rw------- 1 boincer umatlas        57 Nov 27 04:29 setup.sh.local
[2025-11-27 23:59:13] -rw------- 1 boincer umatlas    991551 Nov 27 04:29 agis_schedconf.cvmfs.json
[2025-11-27 23:59:13] -rw-r--r-- 1 boincer umatlas       533 Nov 27 23:49 boinc_task_state.xml
[2025-11-27 23:59:13] -rw-r--r-- 1 boincer umatlas      5954 Nov 27 23:55 init_data.xml
[2025-11-27 23:59:13] -rw------- 1 boincer umatlas 916822062 Nov 27 23:57 HITS.47556173._000948.pool.root.1
[2025-11-27 23:59:13] -rw------- 1 boincer umatlas      1066 Nov 27 23:58 memory_monitor_summary.json
[2025-11-27 23:59:13] -rw------- 1 boincer umatlas   1516240 Nov 27 23:58 agis_ddmendpoints.agis.ALL.json
[2025-11-27 23:59:13] -rw------- 1 boincer umatlas   2321186 Nov 27 23:58 log.47556173._000948.job.log.tgz.1
[2025-11-27 23:59:13] -rw------- 1 boincer umatlas      8648 Nov 27 23:58 heartbeat.json
[2025-11-27 23:59:13] -rw-r--r-- 1 boincer umatlas      8192 Nov 27 23:58 boinc_mmap_file
[2025-11-27 23:59:13] -rw-r--r-- 1 boincer umatlas        29 Nov 27 23:58 wrapper_checkpoint.txt
[2025-11-27 23:59:13] -rw------- 1 boincer umatlas        96 Nov 27 23:58 pilot_heartbeat.json
[2025-11-27 23:59:13] -rw------- 1 boincer umatlas      5006 Nov 27 23:59 pilotlog.txt
[2025-11-27 23:59:13] -rw------- 1 boincer umatlas   9708410 Nov 27 23:59 log.47556173._000948.job.log.1
[2025-11-27 23:59:13] -rw------- 1 boincer umatlas       353 Nov 27 23:59 output.list
[2025-11-27 23:59:13] -rw-r--r-- 1 boincer umatlas       620 Nov 27 23:59 runtime_log
[2025-11-27 23:59:13] -rw------- 1 boincer umatlas  12052480 Nov 27 23:59 result.tar.gz
[2025-11-27 23:59:13] -rw-r--r-- 1 boincer umatlas      9428 Nov 27 23:59 runtime_log.err
[2025-11-27 23:59:13] -rw------- 1 boincer umatlas       793 Nov 27 23:59 AAcKDmmbBi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmrfMKDm7u5qem.diag
[2025-11-27 23:59:13] -rw-r--r-- 1 boincer umatlas     23476 Nov 27 23:59 stderr.txt
[2025-11-27 23:59:13] HITS file was successfully produced:
[2025-11-27 23:59:13] -rw------- 1 boincer umatlas 916822062 Nov 27 23:57 shared/HITS.pool.root.1
[2025-11-27 23:59:13]  *** Contents of shared directory: ***
[2025-11-27 23:59:13] total 1306608
[2025-11-27 23:59:13] -rw-r--r-- 3 boincer umatlas 408466089 Nov 27 03:22 ATLAS.root_0
[2025-11-27 23:59:13] -rw-r--r-- 2 boincer umatlas     15847 Nov 27 03:22 start_atlas.sh
[2025-11-27 23:59:13] -rw-r--r-- 2 boincer umatlas    590107 Nov 27 03:22 input.tar.gz
[2025-11-27 23:59:13] -rw------- 1 boincer umatlas 916822062 Nov 27 23:57 HITS.pool.root.1
[2025-11-27 23:59:13] -rw------- 1 boincer umatlas  12052480 Nov 27 23:59 result.tar.gz
23:59:15 (24166): run_atlas exited; CPU time 540801.840341
23:59:15 (24166): called boinc_finish(0)

</stderr_txt>
]]>

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