Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-27 09:15:21 (2460): vboxwrapper version 26210
2025-11-27 09:15:21 (2460): BOINC client version: 8.0.2
2025-11-27 09:15:21 (2460): Detected: VirtualBox VboxManage Interface (Version: 6.1.50)
2025-11-27 09:15:21 (2460): Successfully copied 'init_data.xml' to the shared directory.
2025-11-27 09:15:22 (2460): Create VM. (boinc_6df92e3df095c6c4, slot#4)
2025-11-27 09:15:22 (2460): Setting Memory Size for VM. (4700MB)
2025-11-27 09:15:22 (2460): Setting CPU Count for VM. (7)
2025-11-27 09:15:23 (2460): Setting Chipset Options for VM.
2025-11-27 09:15:23 (2460): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-27 09:15:23 (2460): Setting Boot Options for VM.
2025-11-27 09:15:24 (2460): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-27 09:15:24 (2460): Enabling VM Network Access.
2025-11-27 09:15:24 (2460): Disabling USB Support for VM.
2025-11-27 09:15:24 (2460): Disabling COM Port Support for VM.
2025-11-27 09:15:25 (2460): Disabling LPT Port Support for VM.
2025-11-27 09:15:25 (2460): Disabling Audio Support for VM.
2025-11-27 09:15:25 (2460): Disabling Clipboard Support for VM.
2025-11-27 09:15:25 (2460): Disabling Drag and Drop Support for VM.
2025-11-27 09:15:26 (2460): Adding storage controller(s) to VM.
2025-11-27 09:15:26 (2460): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-27 09:15:26 (2460): Adding VirtualBox Guest Additions to VM.
2025-11-27 09:15:27 (2460): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-27 09:15:27 (2460): forwarding host port 51293 to guest port 80
2025-11-27 09:15:27 (2460): Enabling remote desktop for VM.
2025-11-27 09:15:27 (2460): Required extension pack not installed, remote desktop not enabled.
2025-11-27 09:15:27 (2460): Enabling shared directory for VM.
2025-11-27 09:15:28 (2460): Starting VM using VBoxManage interface. (boinc_6df92e3df095c6c4, slot#4)
2025-11-27 09:15:32 (2460): Successfully started VM. (PID = '12068')
2025-11-27 09:15:32 (2460): Reporting VM Process ID to BOINC.
2025-11-27 09:15:32 (2460): Guest Log: BIOS: VirtualBox 6.1.50
2025-11-27 09:15:32 (2460): Guest Log: CPUID EDX: 0x178bfbff
2025-11-27 09:15:32 (2460): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-27 09:15:32 (2460): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-27 09:15:32 (2460): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-27 09:15:32 (2460): Detected: Web Application Enabled (http://localhost:51293)
2025-11-27 09:15:32 (2460): Preference change detected
2025-11-27 09:15:32 (2460): Setting CPU throttle for VM. (100%)
2025-11-27 09:15:32 (2460): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-27 09:15:34 (2460): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-27 09:15:34 (2460): Guest Log: BIOS: Booting from Hard Disk...
2025-11-27 09:15:37 (2460): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-27 09:15:37 (2460): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-27 09:15:37 (2460): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-27 09:15:37 (2460): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-27 09:15:37 (2460): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-27 09:15:37 (2460): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-27 09:15:37 (2460): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-27 09:15:37 (2460): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-27 09:15:37 (2460): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-27 09:15:37 (2460): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-27 09:15:37 (2460): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-27 09:15:37 (2460): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-27 09:15:37 (2460): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-27 09:15:37 (2460): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-27 09:15:37 (2460): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-27 09:15:37 (2460): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-27 09:15:37 (2460): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-27 09:15:37 (2460): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-27 09:15:37 (2460): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-27 09:15:37 (2460): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-27 09:15:37 (2460): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-27 09:15:37 (2460): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-27 09:15:37 (2460): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-27 09:15:37 (2460): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-27 09:15:37 (2460): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-27 09:15:37 (2460): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-27 09:15:37 (2460): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-27 09:15:37 (2460): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-27 09:15:37 (2460): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-27 09:15:37 (2460): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-27 09:15:37 (2460): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-27 09:15:37 (2460): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-27 09:15:41 (2460): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-27 09:15:41 (2460): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0000000 (size 0x400000)
2025-11-27 09:15:46 (2460): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-27 09:15:46 (2460): Guest Log: 00:00:00.000080 main     Log opened 2025-11-27T09:15:45.192470000Z
2025-11-27 09:15:46 (2460): Guest Log: 00:00:00.000139 main     OS Product: Linux
2025-11-27 09:15:46 (2460): Guest Log: 00:00:00.000153 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-27 09:15:46 (2460): Guest Log: 00:00:00.000165 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-27 09:15:46 (2460): Guest Log: 00:00:00.000177 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-27 09:15:46 (2460): Guest Log: 00:00:00.000177 main     Process ID: 1354
2025-11-27 09:15:46 (2460): Guest Log: 00:00:00.000177 main     Package type: LINUX_64BITS_GENERIC
2025-11-27 09:15:46 (2460): Guest Log: 00:00:00.001078 main     5.2.32 r132073 started. Verbose level = 0
2025-11-27 09:15:46 (2460): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-27 09:15:46 (2460): Guest Log: [INFO] Mounting shared directory
2025-11-27 09:15:46 (2460): Guest Log: [INFO] Checking for init_data.xml
2025-11-27 09:15:55 (2460): Guest Log: 00:00:10.012850 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 589 638 801 000ns (GuestNow=1 764 231 355 555 693 000 ns GuestLast=1 764 234 945 194 494 000 ns fSetTimeLastLoop=true )
2025-11-27 09:16:11 (2460): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-27 09:16:11 (2460): Guest Log: [INFO] Detected branch: prod
2025-11-27 09:16:11 (2460): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-27 09:16:11 (2460): Guest Log: Copying input files
2025-11-27 09:16:13 (2460): Guest Log: Copied input files into RunAtlas.
2025-11-27 09:16:13 (2460): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-27 09:16:13 (2460): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-27 09:16:13 (2460): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-27 09:16:13 (2460): Guest Log: Further information can be found at the LHC@home message board.
2025-11-27 09:16:22 (2460): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-27 09:16:22 (2460): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-27 09:16:22 (2460): Guest Log: 2.6.3.0 1657 0 32156 153354 3 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-11-27 09:16:23 (2460): Guest Log: copied the webapp to /var/www
2025-11-27 09:16:23 (2460): Guest Log: ATHENA_PROC_NUMBER=7
2025-11-27 09:16:23 (2460): Guest Log: ATHENA_CORE_NUMBER=7
2025-11-27 09:16:24 (2460): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-27 09:16:24 (2460): Guest Log:  *** Starting ATLAS job. (PandaID=6898215320 taskID=47556161) ***
2025-11-27 10:55:34 (2460): Status Report: Elapsed Time: '6000.000000'
2025-11-27 10:55:34 (2460): Status Report: CPU Time: '39509.609375'
2025-11-27 12:35:36 (2460): Status Report: Elapsed Time: '12000.000000'
2025-11-27 12:35:36 (2460): Status Report: CPU Time: '81367.125000'
2025-11-27 14:15:39 (2460): Status Report: Elapsed Time: '18000.000000'
2025-11-27 14:15:39 (2460): Status Report: CPU Time: '123232.968750'
2025-11-27 15:55:41 (2460): Status Report: Elapsed Time: '24000.000000'
2025-11-27 15:55:41 (2460): Status Report: CPU Time: '165112.718750'
2025-11-27 17:35:43 (2460): Status Report: Elapsed Time: '30000.000000'
2025-11-27 17:35:43 (2460): Status Report: CPU Time: '207004.578125'
2025-11-27 18:14:19 (2460): Guest Log:  *** Job finished ***
2025-11-27 18:14:19 (2460): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-27 18:14:19 (2460): Guest Log: 2025-11-27 17:26:43,125 | INFO     | all workflow threads have been joined
2025-11-27 18:14:19 (2460): Guest Log: 2025-11-27 17:26:43,125 | INFO     | end of generic workflow (traces error code: 0)
2025-11-27 18:14:19 (2460): Guest Log: 2025-11-27 17:26:43,125 | INFO     | traces error code: 0
2025-11-27 18:14:19 (2460): Guest Log: 2025-11-27 17:26:43,125 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-27 18:14:19 (2460): Guest Log: 2025-11-27 17:26:47,326 | INFO     | PID=6058 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-11-27 18:14:19 (2460): Guest Log: 2025-11-27 17:26:47,326 | INFO     | found 0 job(s) in 20 queues
2025-11-27 18:14:19 (2460): Guest Log: 2025-11-27 17:26:47,326 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-27 18:14:19 (2460): Guest Log: 2025-11-27 17:26:47,326 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-27 18:14:19 (2460): Guest Log: 2025-11-27 17:26:47,326 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-27 18:14:19 (2460): Guest Log: 2025-11-27 17:26:47,326 | INFO     | [monitor] control thread has ended
2025-11-27 18:14:19 (2460): Guest Log: 2025-11-27 17:26:47,451 [wrapper] ==== pilot stdout END ====
2025-11-27 18:14:19 (2460): Guest Log: 2025-11-27 17:26:47,456 [wrapper] ==== wrapper stdout RESUME ====
2025-11-27 18:14:19 (2460): Guest Log: 2025-11-27 17:26:47,460 [wrapper] pilotpid: 6058
2025-11-27 18:14:19 (2460): Guest Log: 2025-11-27 17:26:47,465 [wrapper] Pilot exit status: 0
2025-11-27 18:14:19 (2460): Guest Log: 2025-11-27 17:26:47,480 [wrapper] pandaids: 6898215320
2025-11-27 18:14:19 (2460): Guest Log: 2025-11-27 17:26:47,508 [wrapper] cleanup supervisor_pilot 13973 6059
2025-11-27 18:14:19 (2460): Guest Log: 2025-11-27 17:26:47,513 [wrapper] Test setup, not cleaning
2025-11-27 18:14:19 (2460): Guest Log: 2025-11-27 17:26:47,518 [wrapper] apfmon messages muted
2025-11-27 18:14:19 (2460): Guest Log: 2025-11-27 17:26:47,522 [wrapper] ==== wrapper stdout END ====
2025-11-27 18:14:19 (2460): Guest Log: 2025-11-27 17:26:47,527 [wrapper] ==== wrapper stderr END ====
2025-11-27 18:14:19 (2460): Guest Log:  *** Error codes and diagnostics ***
2025-11-27 18:14:19 (2460): Guest Log:     "exeErrorCode": 0,
2025-11-27 18:14:19 (2460): Guest Log:     "exeErrorDiag": "",
2025-11-27 18:14:19 (2460): Guest Log:     "pilotErrorCode": 0,
2025-11-27 18:14:19 (2460): Guest Log:     "pilotErrorDiag": "",
2025-11-27 18:14:19 (2460): Guest Log:  *** Listing of results directory ***
2025-11-27 18:14:19 (2460): Guest Log: total 906340
2025-11-27 18:14:19 (2460): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 26 04:39 pilot3.tar.gz
2025-11-27 18:14:19 (2460): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 26 04:42 queuedata.json
2025-11-27 18:14:19 (2460): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 26 04:43 runpilot2-wrapper.sh
2025-11-27 18:14:19 (2460): Guest Log: -rwxr-xr-x. 1 atlas atlas     15847 Nov 27 08:16 start_atlas.sh
2025-11-27 18:14:19 (2460): Guest Log: -rwxr-xr-x. 1 atlas atlas    590104 Nov 27 08:16 input.tar.gz
2025-11-27 18:14:19 (2460): Guest Log: -rwxr-xr-x. 1 atlas atlas      9126 Nov 27 08:16 init_data.xml
2025-11-27 18:14:19 (2460): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 27 08:16 EVNT.47483658._002507.pool.root.1 -> /data/./ATLAS.root_0
2025-11-27 18:14:19 (2460): Guest Log: -rw-r--r--. 1 atlas atlas      2785 Nov 27 08:16 pandaJob.out
2025-11-27 18:14:19 (2460): Guest Log: -rw-------. 1 atlas atlas    991570 Nov 27 08:16 agis_schedconf.cvmfs.json
2025-11-27 18:14:19 (2460): Guest Log: drwx------. 5 atlas atlas      4096 Nov 27 08:16 pilot3
2025-11-27 18:14:19 (2460): Guest Log: -rw-------. 1 atlas atlas 911749181 Nov 27 17:25 HITS.47556161._004895.pool.root.1
2025-11-27 18:14:19 (2460): Guest Log: -rw-------. 1 atlas atlas      1038 Nov 27 17:25 memory_monitor_summary.json
2025-11-27 18:14:19 (2460): Guest Log: -rw-------. 1 atlas atlas   1516240 Nov 27 17:25 agis_ddmendpoints.agis.ALL.json
2025-11-27 18:14:19 (2460): Guest Log: -rw-------. 1 atlas atlas   1706607 Nov 27 17:25 log.47556161._004895.job.log.tgz.1
2025-11-27 18:14:19 (2460): Guest Log: -rw-------. 1 atlas atlas        95 Nov 27 17:26 pilot_heartbeat.json
2025-11-27 18:14:19 (2460): Guest Log: -rw-------. 1 atlas atlas      8631 Nov 27 17:26 heartbeat.json
2025-11-27 18:14:19 (2460): Guest Log: -rw-------. 1 atlas atlas       744 Nov 27 17:26 pilotlog.txt
2025-11-27 18:14:19 (2460): Guest Log: -rw-------. 1 atlas atlas   4544130 Nov 27 17:26 log.47556161._004895.job.log.1
2025-11-27 18:14:19 (2460): Guest Log: -rw-------. 1 atlas atlas       353 Nov 27 17:26 output.list
2025-11-27 18:14:19 (2460): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 27 17:26 runtime_log
2025-11-27 18:14:19 (2460): Guest Log: -rw-------. 1 atlas atlas   6266880 Nov 27 17:26 result.tar.gz
2025-11-27 18:14:19 (2460): Guest Log: -rw-------. 1 atlas atlas       661 Nov 27 17:26 ZOkLDmtYMi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmfzMKDmiUFdkn.diag
2025-11-27 18:14:19 (2460): Guest Log: -rw-r--r--. 1 atlas atlas      8744 Nov 27 17:26 runtime_log.err
2025-11-27 18:14:19 (2460): Guest Log: Looking for outputfile HITS.47556161._004895.pool.root.1
2025-11-27 18:14:19 (2460): Guest Log: HITS file was successfully produced
2025-11-27 18:14:19 (2460): Guest Log: -rw-------. 1 atlas atlas 911749181 Nov 27 17:25 /home/atlas/RunAtlas/HITS.47556161._004895.pool.root.1
2025-11-27 18:14:22 (2460): Guest Log: Successfully finished the ATLAS job!
2025-11-27 18:14:22 (2460): Guest Log: Copying the results back to the shared directory!
2025-11-27 18:14:22 (2460): Guest Log:  *** Contents of shared directory: ***
2025-11-27 18:14:22 (2460): Guest Log: total 1298452
2025-11-27 18:14:22 (2460): Guest Log: -rwxrwxrwx. 1 root root 410972023 Nov 27 08:15 ATLAS.root_0
2025-11-27 18:14:22 (2460): Guest Log: -rwxrwxrwx. 1 root root 911749181 Nov 27 17:14 HITS.pool.root.1
2025-11-27 18:14:22 (2460): Guest Log: -rwxrwxrwx. 1 root root      9126 Nov 27 08:15 init_data.xml
2025-11-27 18:14:22 (2460): Guest Log: -rwxrwxrwx. 1 root root    590104 Nov 27 07:02 input.tar.gz
2025-11-27 18:14:22 (2460): Guest Log: -rwxrwxrwx. 1 root root   6266880 Nov 27 17:14 result.tar.gz
2025-11-27 18:14:22 (2460): Guest Log: -rwxrwxrwx. 1 root root     15847 Nov 27 07:02 start_atlas.sh
2025-11-27 18:14:22 (2460): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-27 18:14:22 (2460): VM Completion File Detected.
2025-11-27 18:14:22 (2460): Powering off VM.
2025-11-27 18:14:23 (2460): Successfully stopped VM.
2025-11-27 18:14:23 (2460): Deregistering VM. (boinc_6df92e3df095c6c4, slot#4)
2025-11-27 18:14:23 (2460): Removing network bandwidth throttle group from VM.
2025-11-27 18:14:23 (2460): Removing VM from VirtualBox.
2025-11-27 18:14:28 (2460): called boinc_finish(0)

</stderr_txt>
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