Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:21:20 (31543): wrapper (7.7.26015): starting
09:21:20 (31543): wrapper: running run_atlas (--nthreads 8)
[2025-11-29 09:21:20] Arguments: --nthreads 8
[2025-11-29 09:21:20] Threads: 8
[2025-11-29 09:21:20] Checking for CVMFS
[2025-11-29 09:21:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-29 09:21:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-29 09:21:21] Running cvmfs_config stat atlas.cern.ch
[2025-11-29 09:21:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-29 09:21:23] 2.11.2.0 4058 289415 138984 153436 3 75 17177364 25165824 1628 130560 8 147660889 99.881 86394242 3018 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-29 09:21:23] CVMFS is ok
[2025-11-29 09:21:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-29 09:21:23] Checking for apptainer binary...
[2025-11-29 09:21:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-29 09:21:23] Running /usr/bin/apptainer --version
[2025-11-29 09:21:23] apptainer version 1.3.2-1.el7
[2025-11-29 09:21:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-29 09:21:32] cg-vwn233.simple-grid.lan
[2025-11-29 09:21:32] apptainer works
[2025-11-29 09:21:32] Set ATHENA_PROC_NUMBER=8
[2025-11-29 09:21:32] Set ATHENA_CORE_NUMBER=8
[2025-11-29 09:21:32] Starting ATLAS job with PandaID=6898214528
[2025-11-29 09:21:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-30 09:02:10]  *** The last 200 lines of the pilot log: ***
[2025-11-30 09:02:10] 2025-11-30 08:01:26,377 | INFO     | time since job start (84958s) is within the limit (172800.0s)
[2025-11-30 09:02:10] 2025-11-30 08:01:28,112 | INFO     | monitor loop #5666: job 0:6898214528 is in state 'finished'
[2025-11-30 09:02:10] 2025-11-30 08:01:28,113 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 09:02:10] 2025-11-30 08:01:28,385 | INFO     | time since job start (84960s) is within the limit (172800.0s)
[2025-11-30 09:02:10] 2025-11-30 08:01:29,660 | INFO     | PID=2958 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-30 09:02:10] 2025-11-30 08:01:29,660 | INFO     | .. there are 9 such processes running
[2025-11-30 09:02:10] 2025-11-30 08:01:30,620 | INFO     | monitor loop #5667: job 0:6898214528 is in state 'finished'
[2025-11-30 09:02:10] 2025-11-30 08:01:30,621 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 09:02:10] 2025-11-30 08:01:30,666 | INFO     | time since job start (84962s) is within the limit (172800.0s)
[2025-11-30 09:02:10] 2025-11-30 08:01:32,678 | INFO     | time since job start (84964s) is within the limit (172800.0s)
[2025-11-30 09:02:10] 2025-11-30 08:01:33,129 | INFO     | monitor loop #5668: job 0:6898214528 is in state 'finished'
[2025-11-30 09:02:10] 2025-11-30 08:01:33,129 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 09:02:10] 2025-11-30 08:01:34,689 | INFO     | time since job start (84966s) is within the limit (172800.0s)
[2025-11-30 09:02:10] 2025-11-30 08:01:35,574 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-30 09:02:10] 2025-11-30 08:01:35,575 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-30 09:02:10] 2025-11-30 08:01:35,577 | INFO     | using path: /var/lib/boinc/slots/4/PanDA_Pilot-6898214528/memory_monitor_summary.json (trf name=prmon)
[2025-11-30 09:02:10] 2025-11-30 08:01:35,577 | INFO     | extracted standard info from prmon json
[2025-11-30 09:02:10] 2025-11-30 08:01:35,578 | INFO     | extracted standard memory fields from prmon json
[2025-11-30 09:02:10] 2025-11-30 08:01:35,578 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-30 09:02:10] 2025-11-30 08:01:35,607 | INFO     | fitting pss+swap vs Time
[2025-11-30 09:02:10] 2025-11-30 08:01:35,609 | INFO     | sum of square deviations: 830965568690.6433
[2025-11-30 09:02:10] 2025-11-30 08:01:35,645 | INFO     | monitor loop #5669: job 0:6898214528 is in state 'finished'
[2025-11-30 09:02:10] 2025-11-30 08:01:35,646 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 09:02:10] 2025-11-30 08:01:35,678 | INFO     | sum of deviations: 1990240459570.433
[2025-11-30 09:02:10] 2025-11-30 08:01:35,678 | INFO     | mean x: 1764447205.0820735
[2025-11-30 09:02:10] 2025-11-30 08:01:35,678 | INFO     | mean y: 2857565.057595392
[2025-11-30 09:02:10] 2025-11-30 08:01:35,678 | INFO     | intersect: -4223158949.517943
[2025-11-30 09:02:10] 2025-11-30 08:01:35,680 | INFO     | chi2: 16.4073305034593
[2025-11-30 09:02:10] 2025-11-30 08:01:35,682 | INFO     | sum of square deviations: 822024538519.7687
[2025-11-30 09:02:10] 2025-11-30 08:01:35,744 | INFO     | sum of deviations: 2469623046947.5376
[2025-11-30 09:02:10] 2025-11-30 08:01:35,744 | INFO     | mean x: 1764447052.5859826
[2025-11-30 09:02:10] 2025-11-30 08:01:35,744 | INFO     | mean y: 2865741.2854046244
[2025-11-30 09:02:10] 2025-11-30 08:01:35,744 | INFO     | intersect: -5298094147.371501
[2025-11-30 09:02:10] 2025-11-30 08:01:35,746 | INFO     | chi2: 12.932744597971062
[2025-11-30 09:02:10] 2025-11-30 08:01:35,746 | INFO     | current chi2=12.932744597971062 (change=21.17703367257495 %)
[2025-11-30 09:02:10] 2025-11-30 08:01:35,746 | INFO     | right removable region: 1383
[2025-11-30 09:02:10] 2025-11-30 08:01:35,748 | INFO     | sum of square deviations: 822023621689.7683
[2025-11-30 09:02:10] 2025-11-30 08:01:35,806 | INFO     | sum of deviations: 1521630410981.5298
[2025-11-30 09:02:10] 2025-11-30 08:01:35,806 | INFO     | mean x: 1764447357.5859826
[2025-11-30 09:02:10] 2025-11-30 08:01:35,806 | INFO     | mean y: 2865553.6257225433
[2025-11-30 09:02:10] 2025-11-30 08:01:35,806 | INFO     | intersect: -3263265354.3399496
[2025-11-30 09:02:10] 2025-11-30 08:01:35,808 | INFO     | chi2: 13.411131893508013
[2025-11-30 09:02:10] 2025-11-30 08:01:35,808 | INFO     | current chi2=13.411131893508013 (change=18.261341229882408 %)
[2025-11-30 09:02:10] 2025-11-30 08:01:35,808 | INFO     | left removable region: 10
[2025-11-30 09:02:10] 2025-11-30 08:01:35,810 | INFO     | sum of square deviations: 802579209158.8014
[2025-11-30 09:02:10] 2025-11-30 08:01:35,863 | INFO     | sum of deviations: 1991640318661.6406
[2025-11-30 09:02:10] 2025-11-30 08:01:35,864 | INFO     | mean x: 1764447327.0903132
[2025-11-30 09:02:10] 2025-11-30 08:01:35,864 | INFO     | mean y: 2877910.89002185
[2025-11-30 09:02:10] 2025-11-30 08:01:35,864 | INFO     | intersect: -4375686094.613028
[2025-11-30 09:02:10] 2025-11-30 08:01:35,866 | INFO     | chi2: 8.7790786368445
[2025-11-30 09:02:10] 2025-11-30 08:01:35,866 | INFO     | current memory leak: 2.48 B/s (using 1373 data points, chi2=8.78)
[2025-11-30 09:02:10] 2025-11-30 08:01:35,867 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-11-30 09:02:10] 2025-11-30 08:01:35,867 | INFO     | ..............................
[2025-11-30 09:02:10] 2025-11-30 08:01:35,868 | INFO     | . Timing measurements:
[2025-11-30 09:02:10] 2025-11-30 08:01:35,868 | INFO     | . get job = 0 s
[2025-11-30 09:02:10] 2025-11-30 08:01:35,868 | INFO     | . initial setup = 3 s
[2025-11-30 09:02:10] 2025-11-30 08:01:35,868 | INFO     | . payload setup = 13 s
[2025-11-30 09:02:10] 2025-11-30 08:01:35,868 | INFO     | . stage-in = 0 s
[2025-11-30 09:02:10] 2025-11-30 08:01:35,868 | INFO     | . payload execution = 84781 s
[2025-11-30 09:02:10] 2025-11-30 08:01:35,868 | INFO     | . stage-out = 5 s
[2025-11-30 09:02:10] 2025-11-30 08:01:35,868 | INFO     | . log creation = 2 s
[2025-11-30 09:02:10] 2025-11-30 08:01:35,868 | INFO     | ..............................
[2025-11-30 09:02:10] 2025-11-30 08:01:35,975 | INFO     | 
[2025-11-30 09:02:10] 2025-11-30 08:01:35,975 | INFO     | job summary report
[2025-11-30 09:02:10] 2025-11-30 08:01:35,975 | INFO     | --------------------------------------------------
[2025-11-30 09:02:10] 2025-11-30 08:01:35,976 | INFO     | PanDA job id: 6898214528
[2025-11-30 09:02:10] 2025-11-30 08:01:35,976 | INFO     | task id: 47556161
[2025-11-30 09:02:10] 2025-11-30 08:01:35,976 | INFO     | errors: (none)
[2025-11-30 09:02:10] 2025-11-30 08:01:35,976 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-30 09:02:10] 2025-11-30 08:01:35,976 | INFO     | pilot state: finished 
[2025-11-30 09:02:10] 2025-11-30 08:01:35,976 | INFO     | transexitcode: 0
[2025-11-30 09:02:10] 2025-11-30 08:01:35,976 | INFO     | exeerrorcode: 0
[2025-11-30 09:02:10] 2025-11-30 08:01:35,976 | INFO     | exeerrordiag: 
[2025-11-30 09:02:10] 2025-11-30 08:01:35,976 | INFO     | exitcode: 0
[2025-11-30 09:02:10] 2025-11-30 08:01:35,976 | INFO     | exitmsg: OK
[2025-11-30 09:02:10] 2025-11-30 08:01:35,976 | INFO     | cpuconsumptiontime: 319596 s
[2025-11-30 09:02:10] 2025-11-30 08:01:35,976 | INFO     | nevents: 1000
[2025-11-30 09:02:10] 2025-11-30 08:01:35,976 | INFO     | neventsw: 0
[2025-11-30 09:02:10] 2025-11-30 08:01:35,977 | INFO     | pid: 9516
[2025-11-30 09:02:10] 2025-11-30 08:01:35,977 | INFO     | pgrp: 9516
[2025-11-30 09:02:10] 2025-11-30 08:01:35,977 | INFO     | corecount: 8
[2025-11-30 09:02:10] 2025-11-30 08:01:35,977 | INFO     | event service: False
[2025-11-30 09:02:10] 2025-11-30 08:01:35,977 | INFO     | sizes: {0: 2284093, 1: 2284292, 12: 2284292, 23: 2284320, 34: 2284348, 44: 2284376, 49: 2284794, 55: 2284822, 84800: 2344473, 84806: 2353467, 84809: 2353523, 84905
[2025-11-30 09:02:10] 2025-11-30 08:01:35,977 | INFO     | --------------------------------------------------
[2025-11-30 09:02:10] 2025-11-30 08:01:35,977 | INFO     | 
[2025-11-30 09:02:10] 2025-11-30 08:01:35,977 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2025-11-30 09:02:10] 2025-11-30 08:01:36,385 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-30 09:02:10] 2025-11-30 08:01:36,385 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-30 09:02:10] 2025-11-30 08:01:36,385 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-30 09:02:10] 2025-11-30 08:01:36,385 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-30 09:02:10] 2025-11-30 08:01:36,386 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-30 09:02:10] 2025-11-30 08:01:36,386 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-30 09:02:10] 2025-11-30 08:01:36,386 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-30 09:02:10] 2025-11-30 08:01:36,386 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-30 09:02:10] 2025-11-30 08:01:36,386 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-30 09:02:10] 2025-11-30 08:01:36,386 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-30 09:02:10] 2025-11-30 08:01:36,386 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-30 09:02:10] 2025-11-30 08:01:36,386 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-30 09:02:10] 2025-11-30 08:01:36,386 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-30 09:02:10] 2025-11-30 08:01:36,386 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-30 09:02:10] 2025-11-30 08:01:36,387 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-30 09:02:10] 2025-11-30 08:01:36,387 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-30 09:02:10] 2025-11-30 08:01:36,387 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-30 09:02:10] 2025-11-30 08:01:36,387 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-30 09:02:10] 2025-11-30 08:01:36,387 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-30 09:02:10] 2025-11-30 08:01:36,387 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-30 09:02:10] 2025-11-30 08:01:36,387 | INFO     | job 6898214528 has completed (purged errors)
[2025-11-30 09:02:10] 2025-11-30 08:01:36,387 | INFO     | overall cleanup function is called
[2025-11-30 09:02:10] 2025-11-30 08:01:37,408 | INFO     | --- collectZombieJob: --- 10, [9516]
[2025-11-30 09:02:10] 2025-11-30 08:01:37,409 | INFO     | zombie collector waiting for pid 9516
[2025-11-30 09:02:10] 2025-11-30 08:01:37,409 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-30 09:02:10] 2025-11-30 08:01:37,409 | INFO     | collected zombie processes
[2025-11-30 09:02:10] 2025-11-30 08:01:37,409 | INFO     | will attempt to kill all subprocesses of pid=9516
[2025-11-30 09:02:10] 2025-11-30 08:01:37,517 | INFO     | process IDs to be killed: [9516] (in reverse order)
[2025-11-30 09:02:10] 2025-11-30 08:01:38,101 | WARNING  | found no corresponding commands to process id(s)
[2025-11-30 09:02:10] 2025-11-30 08:01:38,101 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-30 09:02:10] 2025-11-30 08:01:38,104 | INFO     | did not find any defunct processes belonging to 9516
[2025-11-30 09:02:10] 2025-11-30 08:01:38,107 | INFO     | did not find any defunct processes belonging to 9516
[2025-11-30 09:02:10] 2025-11-30 08:01:38,109 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-30 09:02:10] 2025-11-30 08:01:38,109 | INFO     | ready for new job
[2025-11-30 09:02:10] 2025-11-30 08:01:38,109 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-30 09:02:10] 2025-11-30 08:01:38,114 | INFO     | ***************************************
[2025-11-30 09:02:10] 2025-11-30 08:01:38,115 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-30 09:02:10] 2025-11-30 08:01:38,115 | INFO     | ***************************************
[2025-11-30 09:02:10] 2025-11-30 08:01:38,115 | INFO     | 
[2025-11-30 09:02:10] 2025-11-30 08:01:38,116 | INFO     | pilot is running in a VM
[2025-11-30 09:02:10] 2025-11-30 08:01:38,116 | INFO     | architecture information:
[2025-11-30 09:02:10] 2025-11-30 08:01:38,116 | INFO     | executing command: cat /etc/os-release
[2025-11-30 09:02:10] 2025-11-30 08:01:38,140 | INFO     | cat /etc/os-release:
[2025-11-30 09:02:10] NAME="CentOS Linux"
[2025-11-30 09:02:10] VERSION="7 (Core)"
[2025-11-30 09:02:10] ID="centos"
[2025-11-30 09:02:10] ID_LIKE="rhel fedora"
[2025-11-30 09:02:10] VERSION_ID="7"
[2025-11-30 09:02:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-30 09:02:10] ANSI_COLOR="0;31"
[2025-11-30 09:02:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-30 09:02:10] HOME_URL="https://www.centos.org/"
[2025-11-30 09:02:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-30 09:02:10] 
[2025-11-30 09:02:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-30 09:02:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-30 09:02:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-30 09:02:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-30 09:02:10] 
[2025-11-30 09:02:10] 2025-11-30 08:01:38,140 | INFO     | ***************************************
[2025-11-30 09:02:10] 2025-11-30 08:01:38,644 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2025-11-30 09:02:10] 2025-11-30 08:01:38,769 | INFO     | sufficient remaining disk space (488137293824 B)
[2025-11-30 09:02:10] 2025-11-30 08:01:38,769 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-30 09:02:10] 2025-11-30 08:01:38,770 | INFO     | current server update state: UPDATING_FINAL
[2025-11-30 09:02:10] 2025-11-30 08:01:38,770 | INFO     | update_server=False
[2025-11-30 09:02:10] 2025-11-30 08:01:38,770 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-30 09:02:10] 2025-11-30 08:01:38,770 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-30 09:02:10] 2025-11-30 08:01:39,135 | INFO     | all data control threads have been joined
[2025-11-30 09:02:10] 2025-11-30 08:01:39,156 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-30 09:02:10] 2025-11-30 08:01:39,157 | INFO     | aborting loop
[2025-11-30 09:02:10] 2025-11-30 08:01:39,776 | INFO     | [job] retrieve thread has finished
[2025-11-30 09:02:10] 2025-11-30 08:01:40,142 | INFO     | [data] control thread has finished
[2025-11-30 09:02:10] 2025-11-30 08:01:40,163 | INFO     | [job] job monitor thread has finished
[2025-11-30 09:02:10] 2025-11-30 08:01:40,167 | INFO     | [payload] validate_pre thread has finished
[2025-11-30 09:02:10] 2025-11-30 08:01:40,232 | INFO     | all payload control threads have been joined
[2025-11-30 09:02:10] 2025-11-30 08:01:40,320 | INFO     | [payload] validate_post thread has finished
[2025-11-30 09:02:10] 2025-11-30 08:01:40,413 | INFO     | [job] validate thread has finished
[2025-11-30 09:02:10] 2025-11-30 08:01:40,444 | INFO     | [payload] failed_post thread has finished
[2025-11-30 09:02:10] 2025-11-30 08:01:40,456 | INFO     | all job control threads have been joined
[2025-11-30 09:02:10] 2025-11-30 08:01:40,577 | INFO     | [data] copytool_in thread has finished
[2025-11-30 09:02:10] 2025-11-30 08:01:40,671 | INFO     | [payload] execute_payloads thread has finished
[2025-11-30 09:02:10] 2025-11-30 08:01:40,777 | INFO     | [data] copytool_out thread has finished
[2025-11-30 09:02:10] 2025-11-30 08:01:40,778 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-30 09:02:10] 2025-11-30 08:01:40,989 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-30 09:02:10] 2025-11-30 08:01:41,070 | INFO     | [job] create_data_payload thread has finished
[2025-11-30 09:02:10] 2025-11-30 08:01:41,237 | INFO     | [payload] control thread has finished
[2025-11-30 09:02:10] 2025-11-30 08:01:41,462 | INFO     | [job] control thread has finished
[2025-11-30 09:02:10] 2025-11-30 08:01:41,475 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-30 09:02:10] 2025-11-30 08:01:41,995 | INFO     | [job] queue monitor thread has finished
[2025-11-30 09:02:10] 2025-11-30 08:01:45,484 | INFO     | [data] queue_monitor thread has finished
[2025-11-30 09:02:10] 2025-11-30 08:01:55,987 | INFO     | [monitor] cgroup control has ended
[2025-11-30 09:02:10] 2025-11-30 08:01:57,054 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140282270254912)>', '<ExcThread(monitor, started 140281592661760)>']
[2025-11-30 09:02:10] 2025-11-30 08:02:02,080 | INFO     | all workflow threads have been joined
[2025-11-30 09:02:10] 2025-11-30 08:02:02,081 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-30 09:02:10] 2025-11-30 08:02:02,081 | INFO     | traces error code: 0
[2025-11-30 09:02:10] 2025-11-30 08:02:02,081 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-30 09:02:10] 2025-11-30 08:02:07,941 | INFO     | PID=2958 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-30 09:02:10] 2025-11-30 08:02:07,941 | INFO     | .. there are 9 such processes running
[2025-11-30 09:02:10] 2025-11-30 08:02:07,941 | INFO     | found 0 job(s) in 20 queues
[2025-11-30 09:02:10] 2025-11-30 08:02:07,941 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-30 09:02:10] 2025-11-30 08:02:07,941 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-30 09:02:10] 2025-11-30 08:02:07,942 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-30 09:02:10] 2025-11-30 08:02:07,942 | CRITICAL | thread 'MainThread' is not alive
[2025-11-30 09:02:10] 2025-11-30 08:02:07,942 | INFO     | [monitor] control thread has ended
[2025-11-30 09:02:10] 2025-11-30 08:02:08,084 [wrapper] ==== pilot stdout END ====
[2025-11-30 09:02:10] 2025-11-30 08:02:08,089 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-30 09:02:10] 2025-11-30 08:02:08,092 [wrapper] pilotpid: 2958
[2025-11-30 09:02:10] 2025-11-30 08:02:08,095 [wrapper] Pilot exit status: 0
[2025-11-30 09:02:10] 2025-11-30 08:02:08,141 [wrapper] pandaids: 6898214528
[2025-11-30 09:02:10] 2025-11-30 08:02:08,188 [wrapper] cleanup supervisor_pilot 24903 2959
[2025-11-30 09:02:10] 2025-11-30 08:02:08,252 [wrapper] Test setup, not cleaning
[2025-11-30 09:02:10] 2025-11-30 08:02:08,289 [wrapper] apfmon messages muted
[2025-11-30 09:02:10] 2025-11-30 08:02:08,329 [wrapper] ==== wrapper stdout END ====
[2025-11-30 09:02:10] 2025-11-30 08:02:08,345 [wrapper] ==== wrapper stderr END ====
[2025-11-30 09:02:10]  *** Error codes and diagnostics ***
[2025-11-30 09:02:10]     "exeErrorCode": 0,
[2025-11-30 09:02:10]     "exeErrorDiag": "",
[2025-11-30 09:02:10]     "pilotErrorCode": 0,
[2025-11-30 09:02:10]     "pilotErrorDiag": "",
[2025-11-30 09:02:10]  *** Listing of results directory ***
[2025-11-30 09:02:10] total 1322388
[2025-11-30 09:02:10] -rw-r--r--. 1 boinc boinc    576529 Nov 26 05:39 pilot3.tar.gz
[2025-11-30 09:02:10] -rw-r--r--. 1 boinc boinc      5112 Nov 26 05:42 queuedata.json
[2025-11-30 09:02:10] -rwx------. 1 boinc boinc     36292 Nov 26 05:43 runpilot2-wrapper.sh
[2025-11-30 09:02:10] -rw-r--r--. 1 boinc boinc       100 Nov 29 09:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-30 09:02:10] -rwxr-xr-x. 1 boinc boinc      7986 Nov 29 09:21 run_atlas
[2025-11-30 09:02:10] -rw-r--r--. 1 boinc boinc       105 Nov 29 09:21 job.xml
[2025-11-30 09:02:10] -rw-r--r--. 1 boinc boinc      6392 Nov 29 09:21 init_data.xml
[2025-11-30 09:02:10] -rw-r--r--. 2 boinc boinc 409980028 Nov 29 09:21 EVNT.47483658._002504.pool.root.1
[2025-11-30 09:02:10] -rw-r--r--. 2 boinc boinc     15847 Nov 29 09:21 start_atlas.sh
[2025-11-30 09:02:10] drwxrwx--x. 2 boinc boinc        68 Nov 29 09:21 shared
[2025-11-30 09:02:10] -rw-r--r--. 2 boinc boinc    590105 Nov 29 09:21 input.tar.gz
[2025-11-30 09:02:10] -rw-r--r--. 1 boinc boinc         0 Nov 29 09:21 boinc_lockfile
[2025-11-30 09:02:10] -rw-r--r--. 1 boinc boinc      2785 Nov 29 09:21 pandaJob.out
[2025-11-30 09:02:10] -rw-------. 1 boinc boinc    991818 Nov 29 09:25 agis_schedconf.cvmfs.json
[2025-11-30 09:02:10] drwx------. 5 boinc boinc      4096 Nov 29 09:25 pilot3
[2025-11-30 09:02:10] -rw-r--r--. 1 boinc boinc       533 Nov 30 08:36 boinc_task_state.xml
[2025-11-30 09:02:10] -rw-------. 1 boinc boinc 912743472 Nov 30 08:58 HITS.47556161._004867.pool.root.1
[2025-11-30 09:02:10] -rw-------. 1 boinc boinc      1031 Nov 30 08:59 memory_monitor_summary.json
[2025-11-30 09:02:10] -rw-------. 1 boinc boinc   1516240 Nov 30 08:59 agis_ddmendpoints.agis.ALL.json
[2025-11-30 09:02:10] -rw-------. 1 boinc boinc   2455068 Nov 30 08:59 log.47556161._004867.job.log.tgz.1
[2025-11-30 09:02:10] -rw-------. 1 boinc boinc        95 Nov 30 09:01 pilot_heartbeat.json
[2025-11-30 09:02:10] -rw-------. 1 boinc boinc      7951 Nov 30 09:01 heartbeat.json
[2025-11-30 09:02:10] -rw-r--r--. 1 boinc boinc        29 Nov 30 09:01 wrapper_checkpoint.txt
[2025-11-30 09:02:10] -rw-r--r--. 1 boinc boinc      8192 Nov 30 09:01 boinc_mmap_file
[2025-11-30 09:02:10] -rw-------. 1 boinc boinc       889 Nov 30 09:02 pilotlog.txt
[2025-11-30 09:02:10] -rw-------. 1 boinc boinc  11295457 Nov 30 09:02 log.47556161._004867.job.log.1
[2025-11-30 09:02:10] -rw-------. 1 boinc boinc       353 Nov 30 09:02 output.list
[2025-11-30 09:02:10] -rw-r--r--. 1 boinc boinc       620 Nov 30 09:02 runtime_log
[2025-11-30 09:02:10] -rw-------. 1 boinc boinc  13772800 Nov 30 09:02 result.tar.gz
[2025-11-30 09:02:10] -rw-------. 1 boinc boinc       662 Nov 30 09:02 zN5KDmtYMi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmGzMKDmOvP0gn.diag
[2025-11-30 09:02:10] -rw-r--r--. 1 boinc boinc      8817 Nov 30 09:02 runtime_log.err
[2025-11-30 09:02:10] -rw-r--r--. 1 boinc boinc     21460 Nov 30 09:02 stderr.txt
[2025-11-30 09:02:10] HITS file was successfully produced:
[2025-11-30 09:02:10] -rw-------. 1 boinc boinc 912743472 Nov 30 08:58 shared/HITS.pool.root.1
[2025-11-30 09:02:10]  *** Contents of shared directory: ***
[2025-11-30 09:02:10] total 1305772
[2025-11-30 09:02:10] -rw-r--r--. 2 boinc boinc 409980028 Nov 29 09:21 ATLAS.root_0
[2025-11-30 09:02:10] -rw-r--r--. 2 boinc boinc     15847 Nov 29 09:21 start_atlas.sh
[2025-11-30 09:02:10] -rw-r--r--. 2 boinc boinc    590105 Nov 29 09:21 input.tar.gz
[2025-11-30 09:02:10] -rw-------. 1 boinc boinc 912743472 Nov 30 08:58 HITS.pool.root.1
[2025-11-30 09:02:10] -rw-------. 1 boinc boinc  13772800 Nov 30 09:02 result.tar.gz
09:02:11 (31543): run_atlas exited; CPU time 320219.954153
09:02:11 (31543): called boinc_finish(0)

</stderr_txt>
]]>

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