Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
01:01:02 (2547407): wrapper (7.7.26015): starting
01:01:02 (2547407): wrapper: running run_atlas (--nthreads 12)
[2025-11-27 01:01:02] Arguments: --nthreads 12
[2025-11-27 01:01:02] Threads: 12
[2025-11-27 01:01:02] Checking for CVMFS
[2025-11-27 01:01:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 01:01:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 01:01:02] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 01:01:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 01:01:02] 2.13.2.0 2543092 0 35732 153350 3 17 12442187 16777217 85 130560 0 9972 99.861 2818 1649 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://127.0.0.1:3128 1
[2025-11-27 01:01:02] CVMFS is ok
[2025-11-27 01:01:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 01:01:02] Checking for apptainer binary...
[2025-11-27 01:01:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 01:01:02] Running /usr/bin/apptainer --version
[2025-11-27 01:01:02] apptainer version 1.3.0-bp160.1.36
[2025-11-27 01:01:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 01:01:02] boinc-runner
[2025-11-27 01:01:02] apptainer works
[2025-11-27 01:01:02] Set ATHENA_PROC_NUMBER=12
[2025-11-27 01:01:02] Set ATHENA_CORE_NUMBER=12
[2025-11-27 01:01:02] Starting ATLAS job with PandaID=6898214377
[2025-11-27 01:01:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 03:51:30]  *** The last 200 lines of the pilot log: ***
[2025-11-27 03:51:30] 2025-11-27 09:50:24,680 | INFO     | time since job start (10157s) is within the limit (172800.0s)
[2025-11-27 03:51:30] 2025-11-27 09:50:26,144 | INFO     | monitor loop #768: job 0:6898214377 is in state 'finished'
[2025-11-27 03:51:30] 2025-11-27 09:50:26,144 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 03:51:30] 2025-11-27 09:50:26,161 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 03:51:30] 2025-11-27 09:50:26,163 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 4118.414250000001
[2025-11-27 03:51:30] 2025-11-27 09:50:26,165 | INFO     | using path: /var/lib/boinc/slots/3/PanDA_Pilot-6898214377/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 03:51:30] 2025-11-27 09:50:26,166 | INFO     | extracted standard info from prmon json
[2025-11-27 03:51:30] 2025-11-27 09:50:26,166 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 03:51:30] 2025-11-27 09:50:26,166 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 03:51:30] 2025-11-27 09:50:26,167 | INFO     | fitting pss+swap vs Time
[2025-11-27 03:51:30] 2025-11-27 09:50:26,167 | INFO     | sum of square deviations: 1444149868.0
[2025-11-27 03:51:30] 2025-11-27 09:50:26,167 | INFO     | sum of deviations: 64830299678.000015
[2025-11-27 03:51:30] 2025-11-27 09:50:26,167 | INFO     | mean x: 1764231947.0
[2025-11-27 03:51:30] 2025-11-27 09:50:26,167 | INFO     | mean y: 3442709.652694611
[2025-11-27 03:51:30] 2025-11-27 09:50:26,167 | INFO     | intersect: -79195876114.44557
[2025-11-27 03:51:30] 2025-11-27 09:50:26,168 | INFO     | chi2: 3.4904770755482213
[2025-11-27 03:51:30] 2025-11-27 09:50:26,168 | INFO     | sum of square deviations: 1318277740.5
[2025-11-27 03:51:30] 2025-11-27 09:50:26,168 | INFO     | sum of deviations: 105199092110.5
[2025-11-27 03:51:30] 2025-11-27 09:50:26,168 | INFO     | mean x: 1764231794.5
[2025-11-27 03:51:30] 2025-11-27 09:50:26,168 | INFO     | mean y: 3490964.1913580247
[2025-11-27 03:51:30] 2025-11-27 09:50:26,168 | INFO     | intersect: -140782913411.78256
[2025-11-27 03:51:30] 2025-11-27 09:50:26,168 | INFO     | chi2: 1.5987345022544515
[2025-11-27 03:51:30] 2025-11-27 09:50:26,168 | INFO     | current chi2=1.5987345022544515 (change=54.19724961226537 %)
[2025-11-27 03:51:30] 2025-11-27 09:50:26,168 | INFO     | sum of square deviations: 1199940638.0
[2025-11-27 03:51:30] 2025-11-27 09:50:26,169 | INFO     | sum of deviations: 99189690927.00003
[2025-11-27 03:51:30] 2025-11-27 09:50:26,169 | INFO     | mean x: 1764231642.0
[2025-11-27 03:51:30] 2025-11-27 09:50:26,169 | INFO     | mean y: 3483220.439490446
[2025-11-27 03:51:30] 2025-11-27 09:50:26,169 | INFO     | intersect: -145831723748.86874
[2025-11-27 03:51:30] 2025-11-27 09:50:26,169 | INFO     | chi2: 1.596649029573949
[2025-11-27 03:51:30] 2025-11-27 09:50:26,169 | INFO     | current chi2=1.596649029573949 (change=0.13044521636091452 %)
[2025-11-27 03:51:30] 2025-11-27 09:50:26,169 | INFO     | right removable region: 156
[2025-11-27 03:51:30] 2025-11-27 09:50:26,169 | INFO     | sum of square deviations: 1318277740.5
[2025-11-27 03:51:30] 2025-11-27 09:50:26,169 | INFO     | sum of deviations: 25555190123.0
[2025-11-27 03:51:30] 2025-11-27 09:50:26,169 | INFO     | mean x: 1764232099.5
[2025-11-27 03:51:30] 2025-11-27 09:50:26,169 | INFO     | mean y: 3489726.1975308643
[2025-11-27 03:51:30] 2025-11-27 09:50:26,169 | INFO     | intersect: -34196652883.14508
[2025-11-27 03:51:30] 2025-11-27 09:50:26,169 | INFO     | chi2: 1.9716596683621574
[2025-11-27 03:51:30] 2025-11-27 09:50:26,169 | INFO     | current chi2=1.9716596683621574 (change=43.513175256924306 %)
[2025-11-27 03:51:30] 2025-11-27 09:50:26,169 | INFO     | sum of square deviations: 1199940638.0
[2025-11-27 03:51:30] 2025-11-27 09:50:26,170 | INFO     | sum of deviations: 16195709473.999998
[2025-11-27 03:51:30] 2025-11-27 09:50:26,170 | INFO     | mean x: 1764232252.0
[2025-11-27 03:51:30] 2025-11-27 09:50:26,170 | INFO     | mean y: 3501766.923566879
[2025-11-27 03:51:30] 2025-11-27 09:50:26,170 | INFO     | intersect: -23808503671.676098
[2025-11-27 03:51:30] 2025-11-27 09:50:26,170 | INFO     | chi2: 1.9505017137824245
[2025-11-27 03:51:30] 2025-11-27 09:50:26,170 | INFO     | current chi2=1.9505017137824245 (change=1.0731037875978189 %)
[2025-11-27 03:51:30] 2025-11-27 09:50:26,170 | INFO     | left removable region: 20
[2025-11-27 03:51:30] 2025-11-27 09:50:26,170 | INFO     | sum of square deviations: 779958810.0
[2025-11-27 03:51:30] 2025-11-27 09:50:26,170 | INFO     | sum of deviations: 36875597146.0
[2025-11-27 03:51:30] 2025-11-27 09:50:26,170 | INFO     | mean x: 1764232221.5
[2025-11-27 03:51:30] 2025-11-27 09:50:26,170 | INFO     | mean y: 3570479.367647059
[2025-11-27 03:51:30] 2025-11-27 09:50:26,170 | INFO     | intersect: -83407394097.11638
[2025-11-27 03:51:30] 2025-11-27 09:50:26,170 | INFO     | chi2: 0.008886569623952732
[2025-11-27 03:51:30] 2025-11-27 09:50:26,170 | INFO     | current memory leak: 47.28 B/s (using 136 data points, chi2=0.01)
[2025-11-27 03:51:30] 2025-11-27 09:50:26,170 | INFO     | could have reported an average CPU frequency of 4177 MHz (9 samples)
[2025-11-27 03:51:30] 2025-11-27 09:50:26,171 | INFO     | ..............................
[2025-11-27 03:51:30] 2025-11-27 09:50:26,171 | INFO     | . Timing measurements:
[2025-11-27 03:51:30] 2025-11-27 09:50:26,171 | INFO     | . get job = 0 s
[2025-11-27 03:51:30] 2025-11-27 09:50:26,171 | INFO     | . initial setup = 1 s
[2025-11-27 03:51:30] 2025-11-27 09:50:26,171 | INFO     | . payload setup = 2 s
[2025-11-27 03:51:30] 2025-11-27 09:50:26,171 | INFO     | . stage-in = 0 s
[2025-11-27 03:51:30] 2025-11-27 09:50:26,171 | INFO     | . payload execution = 10136 s
[2025-11-27 03:51:30] 2025-11-27 09:50:26,171 | INFO     | . stage-out = 0 s
[2025-11-27 03:51:30] 2025-11-27 09:50:26,171 | INFO     | . log creation = 0 s
[2025-11-27 03:51:30] 2025-11-27 09:50:26,171 | INFO     | ..............................
[2025-11-27 03:51:30] 2025-11-27 09:50:26,198 | INFO     | 
[2025-11-27 03:51:30] 2025-11-27 09:50:26,198 | INFO     | job summary report
[2025-11-27 03:51:30] 2025-11-27 09:50:26,198 | INFO     | --------------------------------------------------
[2025-11-27 03:51:30] 2025-11-27 09:50:26,198 | INFO     | PanDA job id: 6898214377
[2025-11-27 03:51:30] 2025-11-27 09:50:26,198 | INFO     | task id: 47556161
[2025-11-27 03:51:30] 2025-11-27 09:50:26,198 | INFO     | errors: (none)
[2025-11-27 03:51:30] 2025-11-27 09:50:26,198 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 03:51:30] 2025-11-27 09:50:26,198 | INFO     | pilot state: finished 
[2025-11-27 03:51:30] 2025-11-27 09:50:26,198 | INFO     | transexitcode: 0
[2025-11-27 03:51:30] 2025-11-27 09:50:26,198 | INFO     | exeerrorcode: 0
[2025-11-27 03:51:30] 2025-11-27 09:50:26,198 | INFO     | exeerrordiag: 
[2025-11-27 03:51:30] 2025-11-27 09:50:26,198 | INFO     | exitcode: 0
[2025-11-27 03:51:30] 2025-11-27 09:50:26,198 | INFO     | exitmsg: OK
[2025-11-27 03:51:30] 2025-11-27 09:50:26,198 | INFO     | cpuconsumptiontime: 118335 s
[2025-11-27 03:51:30] 2025-11-27 09:50:26,198 | INFO     | nevents: 1000
[2025-11-27 03:51:30] 2025-11-27 09:50:26,198 | INFO     | neventsw: 0
[2025-11-27 03:51:30] 2025-11-27 09:50:26,198 | INFO     | pid: 2571362
[2025-11-27 03:51:30] 2025-11-27 09:50:26,198 | INFO     | pgrp: 2571362
[2025-11-27 03:51:30] 2025-11-27 09:50:26,198 | INFO     | corecount: 12
[2025-11-27 03:51:30] 2025-11-27 09:50:26,198 | INFO     | event service: False
[2025-11-27 03:51:30] 2025-11-27 09:50:26,198 | INFO     | sizes: {0: 2284264, 2: 2284526, 11: 2284554, 10142: 2314321, 10143: 2323371, 10146: 2323625}
[2025-11-27 03:51:30] 2025-11-27 09:50:26,198 | INFO     | --------------------------------------------------
[2025-11-27 03:51:30] 2025-11-27 09:50:26,198 | INFO     | 
[2025-11-27 03:51:30] 2025-11-27 09:50:26,198 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2025-11-27 03:51:30] 2025-11-27 09:50:26,210 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 03:51:30] 2025-11-27 09:50:26,210 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 03:51:30] 2025-11-27 09:50:26,210 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 03:51:30] 2025-11-27 09:50:26,210 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 03:51:30] 2025-11-27 09:50:26,210 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 03:51:30] 2025-11-27 09:50:26,210 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 03:51:30] 2025-11-27 09:50:26,210 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 03:51:30] 2025-11-27 09:50:26,210 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 03:51:30] 2025-11-27 09:50:26,210 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 03:51:30] 2025-11-27 09:50:26,210 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 03:51:30] 2025-11-27 09:50:26,210 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 03:51:30] 2025-11-27 09:50:26,210 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 03:51:30] 2025-11-27 09:50:26,210 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 03:51:30] 2025-11-27 09:50:26,210 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 03:51:30] 2025-11-27 09:50:26,211 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 03:51:30] 2025-11-27 09:50:26,211 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 03:51:30] 2025-11-27 09:50:26,211 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 03:51:30] 2025-11-27 09:50:26,211 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 03:51:30] 2025-11-27 09:50:26,211 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 03:51:30] 2025-11-27 09:50:26,211 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 03:51:30] 2025-11-27 09:50:26,211 | INFO     | job 6898214377 has completed (purged errors)
[2025-11-27 03:51:30] 2025-11-27 09:50:26,211 | INFO     | overall cleanup function is called
[2025-11-27 03:51:30] 2025-11-27 09:50:27,225 | INFO     | --- collectZombieJob: --- 10, [2571362]
[2025-11-27 03:51:30] 2025-11-27 09:50:27,226 | INFO     | zombie collector waiting for pid 2571362
[2025-11-27 03:51:30] 2025-11-27 09:50:27,226 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 03:51:30] 2025-11-27 09:50:27,226 | INFO     | collected zombie processes
[2025-11-27 03:51:30] 2025-11-27 09:50:27,226 | INFO     | will attempt to kill all subprocesses of pid=2571362
[2025-11-27 03:51:30] 2025-11-27 09:50:27,280 | INFO     | process IDs to be killed: [2571362] (in reverse order)
[2025-11-27 03:51:30] 2025-11-27 09:50:27,306 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 03:51:30] 2025-11-27 09:50:27,307 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 03:51:30] 2025-11-27 09:50:27,310 | INFO     | did not find any defunct processes belonging to 2571362
[2025-11-27 03:51:30] 2025-11-27 09:50:27,312 | INFO     | did not find any defunct processes belonging to 2571362
[2025-11-27 03:51:30] 2025-11-27 09:50:27,313 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 03:51:30] 2025-11-27 09:50:27,313 | INFO     | ready for new job
[2025-11-27 03:51:30] 2025-11-27 09:50:27,313 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 03:51:30] 2025-11-27 09:50:27,315 | INFO     | ***************************************
[2025-11-27 03:51:30] 2025-11-27 09:50:27,315 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 03:51:30] 2025-11-27 09:50:27,315 | INFO     | ***************************************
[2025-11-27 03:51:30] 2025-11-27 09:50:27,315 | INFO     | 
[2025-11-27 03:51:30] 2025-11-27 09:50:27,316 | INFO     | architecture information:
[2025-11-27 03:51:30] 2025-11-27 09:50:27,316 | INFO     | executing command: cat /etc/os-release
[2025-11-27 03:51:30] 2025-11-27 09:50:27,324 | INFO     | cat /etc/os-release:
[2025-11-27 03:51:30] NAME="CentOS Linux"
[2025-11-27 03:51:30] VERSION="7 (Core)"
[2025-11-27 03:51:30] ID="centos"
[2025-11-27 03:51:30] ID_LIKE="rhel fedora"
[2025-11-27 03:51:30] VERSION_ID="7"
[2025-11-27 03:51:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 03:51:30] ANSI_COLOR="0;31"
[2025-11-27 03:51:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 03:51:30] HOME_URL="https://www.centos.org/"
[2025-11-27 03:51:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 03:51:30] 
[2025-11-27 03:51:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 03:51:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 03:51:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 03:51:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 03:51:30] 
[2025-11-27 03:51:30] 2025-11-27 09:50:27,324 | INFO     | ***************************************
[2025-11-27 03:51:30] 2025-11-27 09:50:27,827 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2025-11-27 03:51:30] 2025-11-27 09:50:27,833 | INFO     | sufficient remaining disk space (3848717467648 B)
[2025-11-27 03:51:30] 2025-11-27 09:50:27,833 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 03:51:30] 2025-11-27 09:50:27,833 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 03:51:30] 2025-11-27 09:50:27,833 | INFO     | update_server=False
[2025-11-27 03:51:30] 2025-11-27 09:50:27,833 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 03:51:30] 2025-11-27 09:50:27,833 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 03:51:30] 2025-11-27 09:50:27,834 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 03:51:30] 2025-11-27 09:50:27,834 | INFO     | aborting loop
[2025-11-27 03:51:30] 2025-11-27 09:50:28,017 | INFO     | all data control threads have been joined
[2025-11-27 03:51:30] 2025-11-27 09:50:28,017 | INFO     | all payload control threads have been joined
[2025-11-27 03:51:30] 2025-11-27 09:50:28,825 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 03:51:30] 2025-11-27 09:50:28,838 | INFO     | [job] retrieve thread has finished
[2025-11-27 03:51:30] 2025-11-27 09:50:28,839 | INFO     | [job] job monitor thread has finished
[2025-11-27 03:51:30] 2025-11-27 09:50:28,839 | INFO     | [job] queue monitor thread has finished
[2025-11-27 03:51:30] 2025-11-27 09:50:28,881 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 03:51:30] 2025-11-27 09:50:28,965 | INFO     | all job control threads have been joined
[2025-11-27 03:51:30] 2025-11-27 09:50:29,022 | INFO     | [data] control thread has finished
[2025-11-27 03:51:30] 2025-11-27 09:50:29,023 | INFO     | [payload] control thread has finished
[2025-11-27 03:51:30] 2025-11-27 09:50:29,171 | INFO     | [job] validate thread has finished
[2025-11-27 03:51:30] 2025-11-27 09:50:29,309 | INFO     | [payload] validate_post thread has finished
[2025-11-27 03:51:30] 2025-11-27 09:50:29,348 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 03:51:30] 2025-11-27 09:50:29,490 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 03:51:30] 2025-11-27 09:50:29,522 | INFO     | [data] copytool_in thread has finished
[2025-11-27 03:51:30] 2025-11-27 09:50:29,609 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 03:51:30] 2025-11-27 09:50:29,835 | INFO     | [payload] failed_post thread has finished
[2025-11-27 03:51:30] 2025-11-27 09:50:29,971 | INFO     | [job] control thread has finished
[2025-11-27 03:51:30] 2025-11-27 09:50:29,998 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 03:51:30] 2025-11-27 09:50:30,830 | INFO     | [data] copytool_out thread has finished
[2025-11-27 03:51:30] 2025-11-27 09:50:33,354 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 03:51:30] 2025-11-27 09:50:57,804 | INFO     | PID=2551339 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 03:51:30] 2025-11-27 09:50:57,804 | INFO     | .. there are 2 such processes running
[2025-11-27 03:51:30] 2025-11-27 09:50:57,805 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 03:51:30] 2025-11-27 09:50:57,805 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 03:51:30] 2025-11-27 09:50:57,805 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 03:51:30] 2025-11-27 09:51:23,715 | INFO     | [monitor] cgroup control has ended
[2025-11-27 03:51:30] 2025-11-27 09:51:25,324 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140085981538112)>', '<ExcThread(monitor, started 140084972082944)>']
[2025-11-27 03:51:30] 2025-11-27 09:51:25,945 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 03:51:30] 2025-11-27 09:51:25,945 | INFO     | [monitor] control thread has ended
[2025-11-27 03:51:30] 2025-11-27 09:51:30,349 | INFO     | all workflow threads have been joined
[2025-11-27 03:51:30] 2025-11-27 09:51:30,350 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 03:51:30] 2025-11-27 09:51:30,350 | INFO     | traces error code: 0
[2025-11-27 03:51:30] 2025-11-27 09:51:30,350 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 03:51:30] 2025-11-27 09:51:30,393 [wrapper] ==== pilot stdout END ====
[2025-11-27 03:51:30] 2025-11-27 09:51:30,395 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 03:51:30] 2025-11-27 09:51:30,396 [wrapper] pilotpid: 2551339
[2025-11-27 03:51:30] 2025-11-27 09:51:30,396 [wrapper] Pilot exit status: 0
[2025-11-27 03:51:30] 2025-11-27 09:51:30,400 [wrapper] pandaids: 6898214377
[2025-11-27 03:51:30] 2025-11-27 09:51:30,415 [wrapper] cleanup supervisor_pilot 2725359 2551340
[2025-11-27 03:51:30] 2025-11-27 09:51:30,416 [wrapper] Test setup, not cleaning
[2025-11-27 03:51:30] 2025-11-27 09:51:30,417 [wrapper] apfmon messages muted
[2025-11-27 03:51:30] 2025-11-27 09:51:30,418 [wrapper] ==== wrapper stdout END ====
[2025-11-27 03:51:30] 2025-11-27 09:51:30,419 [wrapper] ==== wrapper stderr END ====
[2025-11-27 03:51:30]  *** Error codes and diagnostics ***
[2025-11-27 03:51:30]     "exeErrorCode": 0,
[2025-11-27 03:51:30]     "exeErrorDiag": "",
[2025-11-27 03:51:30]     "pilotErrorCode": 0,
[2025-11-27 03:51:30]     "pilotErrorDiag": "",
[2025-11-27 03:51:30]  *** Listing of results directory ***
[2025-11-27 03:51:30] total 1293900
[2025-11-27 03:51:30] -rw-r--r--. 1 boinc boinc    576529 Nov 25 21:33 pilot3.tar.gz
[2025-11-27 03:51:30] -rw-r--r--. 1 boinc boinc      5112 Nov 25 22:31 queuedata.json
[2025-11-27 03:51:30] -rwx------. 1 boinc boinc     36292 Nov 25 22:31 runpilot2-wrapper.sh
[2025-11-27 03:51:30] -rw-r--r--. 1 boinc boinc       100 Nov 27 01:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 03:51:30] -rwxr-xr-x. 1 boinc boinc      7986 Nov 27 01:01 run_atlas
[2025-11-27 03:51:30] -rw-r--r--. 1 boinc boinc       105 Nov 27 01:01 job.xml
[2025-11-27 03:51:30] -rw-r--r--. 2 boinc boinc     15847 Nov 27 01:01 start_atlas.sh
[2025-11-27 03:51:30] drwxrwx--x. 1 boinc boinc        76 Nov 27 01:01 shared
[2025-11-27 03:51:30] -rw-r--r--. 2 boinc boinc    590114 Nov 27 01:01 input.tar.gz
[2025-11-27 03:51:30] -rw-r--r--. 1 boinc boinc     10032 Nov 27 01:01 init_data.xml
[2025-11-27 03:51:30] -rw-r--r--. 2 boinc boinc 408504015 Nov 27 01:01 EVNT.47483658._002499.pool.root.1
[2025-11-27 03:51:30] -rw-r--r--. 1 boinc boinc         0 Nov 27 01:01 boinc_setup_complete
[2025-11-27 03:51:30] -rw-r--r--. 1 boinc boinc         0 Nov 27 01:01 boinc_lockfile
[2025-11-27 03:51:30] -rw-r--r--. 1 boinc boinc      2785 Nov 27 01:01 pandaJob.out
[2025-11-27 03:51:30] -rw-------. 1 boinc boinc        63 Nov 27 01:01 setup.sh.local
[2025-11-27 03:51:30] -rw-------. 1 boinc boinc    991554 Nov 27 01:01 agis_schedconf.cvmfs.json
[2025-11-27 03:51:30] -rw-------. 1 boinc boinc   1516240 Nov 27 01:01 agis_ddmendpoints.agis.ALL.json
[2025-11-27 03:51:30] drwx------. 1 boinc boinc       414 Nov 27 01:01 pilot3
[2025-11-27 03:51:30] -rw-r--r--. 1 boinc boinc       531 Nov 27 03:46 boinc_task_state.xml
[2025-11-27 03:51:30] -rw-------. 1 boinc boinc 905717164 Nov 27 03:50 HITS.47556161._004815.pool.root.1
[2025-11-27 03:51:30] -rw-------. 1 boinc boinc      1033 Nov 27 03:50 memory_monitor_summary.json
[2025-11-27 03:51:30] -rw-------. 1 boinc boinc   1913018 Nov 27 03:50 log.47556161._004815.job.log.tgz.1
[2025-11-27 03:51:30] -rw-------. 1 boinc boinc      8593 Nov 27 03:50 heartbeat.json
[2025-11-27 03:51:30] -rw-------. 1 boinc boinc        95 Nov 27 03:50 pilot_heartbeat.json
[2025-11-27 03:51:30] -rw-r--r--. 1 boinc boinc      8192 Nov 27 03:51 boinc_mmap_file
[2025-11-27 03:51:30] -rw-r--r--. 1 boinc boinc        29 Nov 27 03:51 wrapper_checkpoint.txt
[2025-11-27 03:51:30] -rw-------. 1 boinc boinc      4825 Nov 27 03:51 pilotlog.txt
[2025-11-27 03:51:30] -rw-------. 1 boinc boinc   1498793 Nov 27 03:51 log.47556161._004815.job.log.1
[2025-11-27 03:51:30] -rw-------. 1 boinc boinc       353 Nov 27 03:51 output.list
[2025-11-27 03:51:30] -rw-r--r--. 1 boinc boinc       620 Nov 27 03:51 runtime_log
[2025-11-27 03:51:30] -rw-------. 1 boinc boinc   3430400 Nov 27 03:51 result.tar.gz
[2025-11-27 03:51:30] -rw-------. 1 boinc boinc       660 Nov 27 03:51 wkwMDm0MMi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm9xMKDmr1cKFm.diag
[2025-11-27 03:51:30] -rw-r--r--. 1 boinc boinc      9397 Nov 27 03:51 runtime_log.err
[2025-11-27 03:51:30] -rw-r--r--. 1 boinc boinc     20923 Nov 27 03:51 stderr.txt
[2025-11-27 03:51:30] HITS file was successfully produced:
[2025-11-27 03:51:30] -rw-------. 1 boinc boinc 905717164 Nov 27 03:50 shared/HITS.pool.root.1
[2025-11-27 03:51:30]  *** Contents of shared directory: ***
[2025-11-27 03:51:30] total 1287372
[2025-11-27 03:51:30] -rw-r--r--. 2 boinc boinc     15847 Nov 27 01:01 start_atlas.sh
[2025-11-27 03:51:30] -rw-r--r--. 2 boinc boinc    590114 Nov 27 01:01 input.tar.gz
[2025-11-27 03:51:30] -rw-r--r--. 2 boinc boinc 408504015 Nov 27 01:01 ATLAS.root_0
[2025-11-27 03:51:30] -rw-------. 1 boinc boinc 905717164 Nov 27 03:50 HITS.pool.root.1
[2025-11-27 03:51:30] -rw-------. 1 boinc boinc   3430400 Nov 27 03:51 result.tar.gz
03:51:31 (2547407): run_atlas exited; CPU time 118278.463955
03:51:31 (2547407): called boinc_finish(0)

</stderr_txt>
]]>

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