Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
01:36:48 (18616): wrapper (7.7.26015): starting
01:36:48 (18616): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 01:36:48] Arguments: --nthreads 8
[2025-11-27 01:36:48] Threads: 8
[2025-11-27 01:36:48] Checking for CVMFS
[2025-11-27 01:36:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 01:36:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 01:36:48] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 01:36:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 01:36:48] 2.11.2.0 2860 66802 79252 153350 2 81 10343607 20275200 1 130560 0 16434690 99.808 4484965 29774 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 01:36:48] CVMFS is ok
[2025-11-27 01:36:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 01:36:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 01:36:48] Further information can be found at the LHC@home message board.
[2025-11-27 01:36:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 01:36:48] Checking for apptainer binary...
[2025-11-27 01:36:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 01:36:48] Running /usr/bin/apptainer --version
[2025-11-27 01:36:48] apptainer version 1.3.2-1.el7
[2025-11-27 01:36:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 01:36:50] c-204-9.aglt2.org
[2025-11-27 01:36:50] apptainer works
[2025-11-27 01:36:50] Set ATHENA_PROC_NUMBER=8
[2025-11-27 01:36:50] Set ATHENA_CORE_NUMBER=8
[2025-11-27 01:36:50] Starting ATLAS job with PandaID=6897759717
[2025-11-27 01:36:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 15:13:43]  *** The last 200 lines of the pilot log: ***
[2025-11-27 15:13:43] 2025-11-27 20:13:08,535 | INFO     | monitor loop #3622: job 0:6897759717 is in state 'finished'
[2025-11-27 15:13:43] 2025-11-27 20:13:08,536 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 15:13:43] 2025-11-27 20:13:09,819 | INFO     | time since job start (48961s) is within the limit (172800.0s)
[2025-11-27 15:13:43] 2025-11-27 20:13:10,361 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-27 15:13:43] 2025-11-27 20:13:10,364 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1679.125
[2025-11-27 15:13:43] 2025-11-27 20:13:10,366 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6897759717/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 15:13:43] 2025-11-27 20:13:10,366 | INFO     | extracted standard info from prmon json
[2025-11-27 15:13:43] 2025-11-27 20:13:10,367 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 15:13:43] 2025-11-27 20:13:10,367 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 15:13:43] 2025-11-27 20:13:10,380 | INFO     | fitting pss+swap vs Time
[2025-11-27 15:13:43] 2025-11-27 20:13:10,381 | INFO     | sum of square deviations: 159956242872.2893
[2025-11-27 15:13:43] 2025-11-27 20:13:10,394 | INFO     | sum of deviations: 1021654969715.7131
[2025-11-27 15:13:43] 2025-11-27 20:13:10,394 | INFO     | mean x: 1764249891.5162094
[2025-11-27 15:13:43] 2025-11-27 20:13:10,394 | INFO     | mean y: 2870924.483790524
[2025-11-27 15:13:43] 2025-11-27 20:13:10,394 | INFO     | intersect: -11265552471.32603
[2025-11-27 15:13:43] 2025-11-27 20:13:10,395 | INFO     | chi2: 5.246863399813902
[2025-11-27 15:13:43] 2025-11-27 20:13:10,396 | INFO     | sum of square deviations: 156983158534.78763
[2025-11-27 15:13:43] 2025-11-27 20:13:10,409 | INFO     | sum of deviations: 1264452499213.6895
[2025-11-27 15:13:43] 2025-11-27 20:13:10,409 | INFO     | mean x: 1764249739.0163112
[2025-11-27 15:13:43] 2025-11-27 20:13:10,409 | INFO     | mean y: 2883374.023839398
[2025-11-27 15:13:43] 2025-11-27 20:13:10,409 | INFO     | intersect: -14207621832.76192
[2025-11-27 15:13:43] 2025-11-27 20:13:10,410 | INFO     | chi2: 2.5722997610649765
[2025-11-27 15:13:43] 2025-11-27 20:13:10,410 | INFO     | current chi2=2.5722997610649765 (change=50.9745239192579 %)
[2025-11-27 15:13:43] 2025-11-27 20:13:10,411 | INFO     | sum of square deviations: 154047144659.78674
[2025-11-27 15:13:43] 2025-11-27 20:13:10,424 | INFO     | sum of deviations: 1317900000790.452
[2025-11-27 15:13:43] 2025-11-27 20:13:10,424 | INFO     | mean x: 1764249586.5164142
[2025-11-27 15:13:43] 2025-11-27 20:13:10,424 | INFO     | mean y: 2886140.4267676766
[2025-11-27 15:13:43] 2025-11-27 20:13:10,424 | INFO     | intersect: -15090574608.875221
[2025-11-27 15:13:43] 2025-11-27 20:13:10,425 | INFO     | chi2: 2.2551341689883655
[2025-11-27 15:13:43] 2025-11-27 20:13:10,425 | INFO     | current chi2=2.2551341689883655 (change=12.330040101753108 %)
[2025-11-27 15:13:43] 2025-11-27 20:13:10,425 | INFO     | right removable region: 791
[2025-11-27 15:13:43] 2025-11-27 20:13:10,426 | INFO     | sum of square deviations: 156983150604.78763
[2025-11-27 15:13:43] 2025-11-27 20:13:10,439 | INFO     | sum of deviations: 810281522248.1796
[2025-11-27 15:13:43] 2025-11-27 20:13:10,439 | INFO     | mean x: 1764250044.0163112
[2025-11-27 15:13:43] 2025-11-27 20:13:10,439 | INFO     | mean y: 2881749.986198243
[2025-11-27 15:13:43] 2025-11-27 20:13:10,439 | INFO     | intersect: -9103440844.410482
[2025-11-27 15:13:43] 2025-11-27 20:13:10,440 | INFO     | chi2: 3.1736220908461226
[2025-11-27 15:13:43] 2025-11-27 20:13:10,440 | INFO     | current chi2=3.1736220908461226 (change=39.51391814472079 %)
[2025-11-27 15:13:43] 2025-11-27 20:13:10,441 | INFO     | sum of square deviations: 154047128799.78668
[2025-11-27 15:13:43] 2025-11-27 20:13:10,454 | INFO     | sum of deviations: 762529705874.462
[2025-11-27 15:13:43] 2025-11-27 20:13:10,454 | INFO     | mean x: 1764250196.5164142
[2025-11-27 15:13:43] 2025-11-27 20:13:10,454 | INFO     | mean y: 2884229.2335858587
[2025-11-27 15:13:43] 2025-11-27 20:13:10,455 | INFO     | intersect: -8730113223.689316
[2025-11-27 15:13:43] 2025-11-27 20:13:10,455 | INFO     | chi2: 3.1313645561807926
[2025-11-27 15:13:43] 2025-11-27 20:13:10,455 | INFO     | current chi2=3.1313645561807926 (change=1.331523837926893 %)
[2025-11-27 15:13:43] 2025-11-27 20:13:10,456 | INFO     | left removable region: 20
[2025-11-27 15:13:43] 2025-11-27 20:13:10,456 | INFO     | sum of square deviations: 142115415644.78085
[2025-11-27 15:13:43] 2025-11-27 20:13:10,468 | INFO     | sum of deviations: 1001138498991.9567
[2025-11-27 15:13:43] 2025-11-27 20:13:10,469 | INFO     | mean x: 1764250166.0168612
[2025-11-27 15:13:43] 2025-11-27 20:13:10,469 | INFO     | mean y: 2902614.618677043
[2025-11-27 15:13:43] 2025-11-27 20:13:10,469 | INFO     | intersect: -12425437794.751234
[2025-11-27 15:13:43] 2025-11-27 20:13:10,470 | INFO     | chi2: 0.1182973506419057
[2025-11-27 15:13:43] 2025-11-27 20:13:10,470 | INFO     | current memory leak: 7.04 B/s (using 771 data points, chi2=0.12)
[2025-11-27 15:13:43] 2025-11-27 20:13:10,470 | INFO     | could have reported an average CPU frequency of 2178 MHz (30 samples)
[2025-11-27 15:13:43] 2025-11-27 20:13:10,471 | INFO     | ..............................
[2025-11-27 15:13:43] 2025-11-27 20:13:10,471 | INFO     | . Timing measurements:
[2025-11-27 15:13:43] 2025-11-27 20:13:10,471 | INFO     | . get job = 0 s
[2025-11-27 15:13:43] 2025-11-27 20:13:10,471 | INFO     | . initial setup = 2 s
[2025-11-27 15:13:43] 2025-11-27 20:13:10,471 | INFO     | . payload setup = 9 s
[2025-11-27 15:13:43] 2025-11-27 20:13:10,471 | INFO     | . stage-in = 0 s
[2025-11-27 15:13:43] 2025-11-27 20:13:10,471 | INFO     | . payload execution = 48921 s
[2025-11-27 15:13:43] 2025-11-27 20:13:10,471 | INFO     | . stage-out = 3 s
[2025-11-27 15:13:43] 2025-11-27 20:13:10,471 | INFO     | . log creation = 0 s
[2025-11-27 15:13:43] 2025-11-27 20:13:10,472 | INFO     | ..............................
[2025-11-27 15:13:43] 2025-11-27 20:13:10,894 | INFO     | 
[2025-11-27 15:13:43] 2025-11-27 20:13:10,894 | INFO     | job summary report
[2025-11-27 15:13:43] 2025-11-27 20:13:10,895 | INFO     | --------------------------------------------------
[2025-11-27 15:13:43] 2025-11-27 20:13:10,895 | INFO     | PanDA job id: 6897759717
[2025-11-27 15:13:43] 2025-11-27 20:13:10,895 | INFO     | task id: 47556161
[2025-11-27 15:13:43] 2025-11-27 20:13:10,895 | INFO     | errors: (none)
[2025-11-27 15:13:43] 2025-11-27 20:13:10,895 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 15:13:43] 2025-11-27 20:13:10,896 | INFO     | pilot state: finished 
[2025-11-27 15:13:43] 2025-11-27 20:13:10,896 | INFO     | transexitcode: 0
[2025-11-27 15:13:43] 2025-11-27 20:13:10,896 | INFO     | exeerrorcode: 0
[2025-11-27 15:13:43] 2025-11-27 20:13:10,896 | INFO     | exeerrordiag: 
[2025-11-27 15:13:43] 2025-11-27 20:13:10,896 | INFO     | exitcode: 0
[2025-11-27 15:13:43] 2025-11-27 20:13:10,896 | INFO     | exitmsg: OK
[2025-11-27 15:13:43] 2025-11-27 20:13:10,897 | INFO     | cpuconsumptiontime: 361217 s
[2025-11-27 15:13:43] 2025-11-27 20:13:10,897 | INFO     | nevents: 1000
[2025-11-27 15:13:43] 2025-11-27 20:13:10,897 | INFO     | neventsw: 0
[2025-11-27 15:13:43] 2025-11-27 20:13:10,897 | INFO     | pid: 28882
[2025-11-27 15:13:43] 2025-11-27 20:13:10,897 | INFO     | pgrp: 28882
[2025-11-27 15:13:43] 2025-11-27 20:13:10,897 | INFO     | corecount: 8
[2025-11-27 15:13:43] 2025-11-27 20:13:10,898 | INFO     | event service: False
[2025-11-27 15:13:43] 2025-11-27 20:13:10,898 | INFO     | sizes: {0: 2284265, 1: 2284265, 6: 2284555, 11: 2284583, 48934: 2332736, 48937: 2341730, 48938: 2341914, 48945: 2342160}
[2025-11-27 15:13:43] 2025-11-27 20:13:10,898 | INFO     | --------------------------------------------------
[2025-11-27 15:13:43] 2025-11-27 20:13:10,898 | INFO     | 
[2025-11-27 15:13:43] 2025-11-27 20:13:10,898 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-27 15:13:43] 2025-11-27 20:13:10,931 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 15:13:43] 2025-11-27 20:13:10,931 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 15:13:43] 2025-11-27 20:13:10,931 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 15:13:43] 2025-11-27 20:13:10,932 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 15:13:43] 2025-11-27 20:13:10,932 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 15:13:43] 2025-11-27 20:13:10,932 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 15:13:43] 2025-11-27 20:13:10,932 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 15:13:43] 2025-11-27 20:13:10,932 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 15:13:43] 2025-11-27 20:13:10,933 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 15:13:43] 2025-11-27 20:13:10,933 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 15:13:43] 2025-11-27 20:13:10,933 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 15:13:43] 2025-11-27 20:13:10,933 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 15:13:43] 2025-11-27 20:13:10,933 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 15:13:43] 2025-11-27 20:13:10,933 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 15:13:43] 2025-11-27 20:13:10,934 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 15:13:43] 2025-11-27 20:13:10,934 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 15:13:43] 2025-11-27 20:13:10,934 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 15:13:43] 2025-11-27 20:13:10,934 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 15:13:43] 2025-11-27 20:13:10,934 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 15:13:43] 2025-11-27 20:13:10,934 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 15:13:43] 2025-11-27 20:13:10,935 | INFO     | job 6897759717 has completed (purged errors)
[2025-11-27 15:13:43] 2025-11-27 20:13:10,935 | INFO     | overall cleanup function is called
[2025-11-27 15:13:43] 2025-11-27 20:13:11,950 | INFO     | --- collectZombieJob: --- 10, [28882]
[2025-11-27 15:13:43] 2025-11-27 20:13:11,950 | INFO     | zombie collector waiting for pid 28882
[2025-11-27 15:13:43] 2025-11-27 20:13:11,950 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 15:13:43] 2025-11-27 20:13:11,951 | INFO     | collected zombie processes
[2025-11-27 15:13:43] 2025-11-27 20:13:11,951 | INFO     | will attempt to kill all subprocesses of pid=28882
[2025-11-27 15:13:43] 2025-11-27 20:13:12,047 | INFO     | process IDs to be killed: [28882] (in reverse order)
[2025-11-27 15:13:43] 2025-11-27 20:13:12,110 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 15:13:43] 2025-11-27 20:13:12,110 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 15:13:43] 2025-11-27 20:13:12,114 | INFO     | did not find any defunct processes belonging to 28882
[2025-11-27 15:13:43] 2025-11-27 20:13:12,117 | INFO     | did not find any defunct processes belonging to 28882
[2025-11-27 15:13:43] 2025-11-27 20:13:12,119 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 15:13:43] 2025-11-27 20:13:12,119 | INFO     | ready for new job
[2025-11-27 15:13:43] 2025-11-27 20:13:12,120 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 15:13:43] 2025-11-27 20:13:12,123 | INFO     | ***************************************
[2025-11-27 15:13:43] 2025-11-27 20:13:12,123 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 15:13:43] 2025-11-27 20:13:12,123 | INFO     | ***************************************
[2025-11-27 15:13:43] 2025-11-27 20:13:12,123 | INFO     | 
[2025-11-27 15:13:43] 2025-11-27 20:13:12,124 | INFO     | architecture information:
[2025-11-27 15:13:43] 2025-11-27 20:13:12,125 | INFO     | executing command: cat /etc/os-release
[2025-11-27 15:13:43] 2025-11-27 20:13:12,146 | INFO     | cat /etc/os-release:
[2025-11-27 15:13:43] NAME="CentOS Linux"
[2025-11-27 15:13:43] VERSION="7 (Core)"
[2025-11-27 15:13:43] ID="centos"
[2025-11-27 15:13:43] ID_LIKE="rhel fedora"
[2025-11-27 15:13:43] VERSION_ID="7"
[2025-11-27 15:13:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 15:13:43] ANSI_COLOR="0;31"
[2025-11-27 15:13:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 15:13:43] HOME_URL="https://www.centos.org/"
[2025-11-27 15:13:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 15:13:43] 
[2025-11-27 15:13:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 15:13:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 15:13:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 15:13:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 15:13:43] 
[2025-11-27 15:13:43] 2025-11-27 20:13:12,146 | INFO     | ***************************************
[2025-11-27 15:13:43] 2025-11-27 20:13:12,649 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-27 15:13:43] 2025-11-27 20:13:12,670 | INFO     | sufficient remaining disk space (17475567616 B)
[2025-11-27 15:13:43] 2025-11-27 20:13:12,671 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 15:13:43] 2025-11-27 20:13:12,671 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 15:13:43] 2025-11-27 20:13:12,671 | INFO     | update_server=False
[2025-11-27 15:13:43] 2025-11-27 20:13:12,671 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 15:13:43] 2025-11-27 20:13:12,672 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 15:13:43] 2025-11-27 20:13:12,672 | INFO     | aborting loop
[2025-11-27 15:13:43] 2025-11-27 20:13:12,731 | INFO     | all data control threads have been joined
[2025-11-27 15:13:43] 2025-11-27 20:13:13,429 | INFO     | all job control threads have been joined
[2025-11-27 15:13:43] 2025-11-27 20:13:13,677 | INFO     | [job] retrieve thread has finished
[2025-11-27 15:13:43] 2025-11-27 20:13:13,678 | INFO     | [job] job monitor thread has finished
[2025-11-27 15:13:43] 2025-11-27 20:13:13,733 | INFO     | [data] control thread has finished
[2025-11-27 15:13:43] 2025-11-27 20:13:13,908 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 15:13:43] 2025-11-27 20:13:13,994 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 15:13:43] 2025-11-27 20:13:14,069 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 15:13:43] 2025-11-27 20:13:14,118 | INFO     | all payload control threads have been joined
[2025-11-27 15:13:43] 2025-11-27 20:13:14,336 | INFO     | [payload] failed_post thread has finished
[2025-11-27 15:13:43] 2025-11-27 20:13:14,431 | INFO     | [job] validate thread has finished
[2025-11-27 15:13:43] 2025-11-27 20:13:14,435 | INFO     | [job] control thread has finished
[2025-11-27 15:13:43] 2025-11-27 20:13:14,670 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 15:13:43] 2025-11-27 20:13:14,673 | INFO     | [data] copytool_in thread has finished
[2025-11-27 15:13:43] 2025-11-27 20:13:15,052 | INFO     | [payload] validate_post thread has finished
[2025-11-27 15:13:43] 2025-11-27 20:13:15,123 | INFO     | [payload] control thread has finished
[2025-11-27 15:13:43] 2025-11-27 20:13:15,162 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 15:13:43] 2025-11-27 20:13:15,572 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 15:13:43] 2025-11-27 20:13:15,914 | INFO     | [data] copytool_out thread has finished
[2025-11-27 15:13:43] 2025-11-27 20:13:16,577 | INFO     | [job] queue monitor thread has finished
[2025-11-27 15:13:43] 2025-11-27 20:13:18,000 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 15:13:43] 2025-11-27 20:13:23,599 | INFO     | job.realtimelogging is not enabled
[2025-11-27 15:13:43] 2025-11-27 20:13:24,605 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 15:13:43] 2025-11-27 20:13:27,213 | INFO     | [monitor] cgroup control has ended
[2025-11-27 15:13:43] 2025-11-27 20:13:27,723 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139883717199680)>', '<ExcThread(monitor, started 139882966009600)>']
[2025-11-27 15:13:43] 2025-11-27 20:13:32,737 | INFO     | all workflow threads have been joined
[2025-11-27 15:13:43] 2025-11-27 20:13:32,738 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 15:13:43] 2025-11-27 20:13:32,738 | INFO     | traces error code: 0
[2025-11-27 15:13:43] 2025-11-27 20:13:32,739 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 15:13:43] 2025-11-27 20:13:43,039 | INFO     | PID=22401 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 15:13:43] 2025-11-27 20:13:43,040 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 15:13:43] 2025-11-27 20:13:43,041 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 15:13:43] 2025-11-27 20:13:43,041 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 15:13:43] 2025-11-27 20:13:43,041 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 15:13:43] 2025-11-27 20:13:43,041 | INFO     | [monitor] control thread has ended
[2025-11-27 15:13:43] 2025-11-27 20:13:43,154 [wrapper] ==== pilot stdout END ====
[2025-11-27 15:13:43] 2025-11-27 20:13:43,159 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 15:13:43] 2025-11-27 20:13:43,165 [wrapper] pilotpid: 22401
[2025-11-27 15:13:43] 2025-11-27 20:13:43,170 [wrapper] Pilot exit status: 0
[2025-11-27 15:13:43] 2025-11-27 20:13:43,189 [wrapper] pandaids: 6897759717
[2025-11-27 15:13:43] 2025-11-27 20:13:43,236 [wrapper] cleanup supervisor_pilot 25156 22402
[2025-11-27 15:13:43] 2025-11-27 20:13:43,241 [wrapper] Test setup, not cleaning
[2025-11-27 15:13:43] 2025-11-27 20:13:43,247 [wrapper] apfmon messages muted
[2025-11-27 15:13:43] 2025-11-27 20:13:43,252 [wrapper] ==== wrapper stdout END ====
[2025-11-27 15:13:43] 2025-11-27 20:13:43,257 [wrapper] ==== wrapper stderr END ====
[2025-11-27 15:13:43]  *** Error codes and diagnostics ***
[2025-11-27 15:13:43]     "exeErrorCode": 0,
[2025-11-27 15:13:43]     "exeErrorDiag": "",
[2025-11-27 15:13:43]     "pilotErrorCode": 0,
[2025-11-27 15:13:43]     "pilotErrorDiag": "",
[2025-11-27 15:13:43]  *** Listing of results directory ***
[2025-11-27 15:13:43] total 1310000
[2025-11-27 15:13:43] -rw-r--r-- 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-27 15:13:43] -rwx------ 1 boincer umatlas     36292 Nov 25 12:01 runpilot2-wrapper.sh
[2025-11-27 15:13:43] -rw-r--r-- 1 boincer umatlas      5112 Nov 25 12:02 queuedata.json
[2025-11-27 15:13:43] -rw-r--r-- 1 boincer umatlas       100 Nov 27 01:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 15:13:43] -rwxr-xr-x 1 boincer umatlas      7986 Nov 27 01:36 run_atlas
[2025-11-27 15:13:43] -rw-r--r-- 1 boincer umatlas       105 Nov 27 01:36 job.xml
[2025-11-27 15:13:43] -rw-r--r-- 2 boincer umatlas 409997636 Nov 27 01:36 EVNT.47483658._002323.pool.root.1
[2025-11-27 15:13:43] -rw-r--r-- 2 boincer umatlas     15847 Nov 27 01:36 start_atlas.sh
[2025-11-27 15:13:43] drwxrwx--x 2 boincer umatlas      4096 Nov 27 01:36 shared
[2025-11-27 15:13:43] -rw-r--r-- 2 boincer umatlas    590106 Nov 27 01:36 input.tar.gz
[2025-11-27 15:13:43] -rw-r--r-- 1 boincer umatlas         0 Nov 27 01:36 boinc_lockfile
[2025-11-27 15:13:43] -rw-r--r-- 1 boincer umatlas      2786 Nov 27 01:36 pandaJob.out
[2025-11-27 15:13:43] -rw------- 1 boincer umatlas        57 Nov 27 01:36 setup.sh.local
[2025-11-27 15:13:43] -rw------- 1 boincer umatlas    991554 Nov 27 01:37 agis_schedconf.cvmfs.json
[2025-11-27 15:13:43] drwx------ 5 boincer umatlas      4096 Nov 27 01:37 pilot3
[2025-11-27 15:13:43] -rw-r--r-- 1 boincer umatlas       533 Nov 27 15:03 boinc_task_state.xml
[2025-11-27 15:13:43] -rw-r--r-- 1 boincer umatlas      5912 Nov 27 15:12 init_data.xml
[2025-11-27 15:13:43] -rw------- 1 boincer umatlas 909909785 Nov 27 15:12 HITS.47556161._003052.pool.root.1
[2025-11-27 15:13:43] -rw------- 1 boincer umatlas      1065 Nov 27 15:12 memory_monitor_summary.json
[2025-11-27 15:13:43] -rw------- 1 boincer umatlas   1516240 Nov 27 15:13 agis_ddmendpoints.agis.ALL.json
[2025-11-27 15:13:43] -rw------- 1 boincer umatlas   2045725 Nov 27 15:13 log.47556161._003052.job.log.tgz.1
[2025-11-27 15:13:43] -rw------- 1 boincer umatlas      8672 Nov 27 15:13 heartbeat.json
[2025-11-27 15:13:43] -rw-r--r-- 1 boincer umatlas      8192 Nov 27 15:13 boinc_mmap_file
[2025-11-27 15:13:43] -rw-r--r-- 1 boincer umatlas        29 Nov 27 15:13 wrapper_checkpoint.txt
[2025-11-27 15:13:43] -rw------- 1 boincer umatlas        95 Nov 27 15:13 pilot_heartbeat.json
[2025-11-27 15:13:43] -rw------- 1 boincer umatlas       745 Nov 27 15:13 pilotlog.txt
[2025-11-27 15:13:43] -rw------- 1 boincer umatlas   6766060 Nov 27 15:13 log.47556161._003052.job.log.1
[2025-11-27 15:13:43] -rw------- 1 boincer umatlas       353 Nov 27 15:13 output.list
[2025-11-27 15:13:43] -rw-r--r-- 1 boincer umatlas       620 Nov 27 15:13 runtime_log
[2025-11-27 15:13:43] -rw------- 1 boincer umatlas   8826880 Nov 27 15:13 result.tar.gz
[2025-11-27 15:13:43] -rw------- 1 boincer umatlas       669 Nov 27 15:13 WOhMDmraBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmFdJKDmBeF2mm.diag
[2025-11-27 15:13:43] -rw-r--r-- 1 boincer umatlas      9338 Nov 27 15:13 runtime_log.err
[2025-11-27 15:13:43] -rw-r--r-- 1 boincer umatlas     21290 Nov 27 15:13 stderr.txt
[2025-11-27 15:13:43] HITS file was successfully produced:
[2025-11-27 15:13:43] -rw------- 1 boincer umatlas 909909785 Nov 27 15:12 shared/HITS.pool.root.1
[2025-11-27 15:13:43]  *** Contents of shared directory: ***
[2025-11-27 15:13:43] total 1298196
[2025-11-27 15:13:43] -rw-r--r-- 2 boincer umatlas 409997636 Nov 27 01:36 ATLAS.root_0
[2025-11-27 15:13:43] -rw-r--r-- 2 boincer umatlas     15847 Nov 27 01:36 start_atlas.sh
[2025-11-27 15:13:43] -rw-r--r-- 2 boincer umatlas    590106 Nov 27 01:36 input.tar.gz
[2025-11-27 15:13:43] -rw------- 1 boincer umatlas 909909785 Nov 27 15:12 HITS.pool.root.1
[2025-11-27 15:13:43] -rw------- 1 boincer umatlas   8826880 Nov 27 15:13 result.tar.gz
15:13:44 (18616): run_atlas exited; CPU time 351080.017884
15:13:44 (18616): called boinc_finish(0)

</stderr_txt>
]]>

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