Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:34:07 (3949465): wrapper (7.7.26015): starting
22:34:07 (3949465): wrapper: running run_atlas (--nthreads 12)
[2025-11-26 22:34:07] Arguments: --nthreads 12
[2025-11-26 22:34:07] Threads: 12
[2025-11-26 22:34:07] Checking for CVMFS
[2025-11-26 22:34:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 22:34:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 22:34:07] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 22:34:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 22:34:08] 2.11.5.0 94007 29339 235164 153350 2 551 39442035 45568001 27325 130560 0 280100772 99.770 189331791 27124 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-26 22:34:08] CVMFS is ok
[2025-11-26 22:34:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 22:34:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 22:34:08] Further information can be found at the LHC@home message board.
[2025-11-26 22:34:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 22:34:08] Checking for apptainer binary...
[2025-11-26 22:34:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 22:34:08] Running /usr/bin/apptainer --version
[2025-11-26 22:34:08] apptainer version 1.4.1-1.el9
[2025-11-26 22:34:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 22:34:08] wns0032.triumf.lcg
[2025-11-26 22:34:08] apptainer works
[2025-11-26 22:34:08] Set ATHENA_PROC_NUMBER=12
[2025-11-26 22:34:08] Set ATHENA_CORE_NUMBER=12
[2025-11-26 22:34:08] Starting ATLAS job with PandaID=6891584273
[2025-11-26 22:34:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 22:38:25]  *** The last 200 lines of the pilot log: ***
[2025-11-26 22:38:25] 2025-11-27 06:37:51,926 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 22:38:25] 2025-11-27 06:37:51,927 | WARNING  | wrong length of table data, x=[1764225282.0, 1764225343.0], y=[1153.0, 253963.0] (must be same and length>=4)
[2025-11-26 22:38:25] 2025-11-27 06:37:51,928 | INFO     | could have reported an average CPU frequency of 2651 MHz (4 samples)
[2025-11-26 22:38:25] 2025-11-27 06:37:51,928 | INFO     | ..............................
[2025-11-26 22:38:25] 2025-11-27 06:37:51,928 | INFO     | . Timing measurements:
[2025-11-26 22:38:25] 2025-11-27 06:37:51,928 | INFO     | . get job = 0 s
[2025-11-26 22:38:25] 2025-11-27 06:37:51,928 | INFO     | . initial setup = 2 s
[2025-11-26 22:38:25] 2025-11-27 06:37:51,928 | INFO     | . payload setup = 5 s
[2025-11-26 22:38:25] 2025-11-27 06:37:51,928 | INFO     | . stage-in = 0 s
[2025-11-26 22:38:25] 2025-11-27 06:37:51,928 | INFO     | . payload execution = 68 s
[2025-11-26 22:38:25] 2025-11-27 06:37:51,928 | INFO     | . stage-out = 0 s
[2025-11-26 22:38:25] 2025-11-27 06:37:51,928 | INFO     | . log creation = 0 s
[2025-11-26 22:38:25] 2025-11-27 06:37:51,928 | INFO     | ..............................
[2025-11-26 22:38:25] 2025-11-27 06:37:51,928 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 22:38:25] 2025-11-27 06:37:51,929 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6891584273/pilotlog.txt
[2025-11-26 22:38:25] 2025-11-27 06:37:51,942 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-26 22:38:25] - Log from pilotlog.txt -
[2025-11-26 22:38:25] 2025-11-27 06:37:51,925 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6891584273/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 22:38:25] 2025-11-27 06:37:51,926 | INFO     | extracted standard info from prmon json
[2025-11-26 22:38:25] 2025-11-27 06:37:51,926 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 22:38:25] 2025-11-27 06:37:51,926 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 22:38:25] 2025-11-27 06:37:51,926 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-26 22:38:25] 2025-11-27 06:37:51,926 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 22:38:25] 2025-11-27 06:37:51,927 | WARNING  | wrong length of table data, x=[1764225282.0, 1764225343.0], y=[1153.0, 253963.0] (must be same and length>=4)
[2025-11-26 22:38:25] 2025-11-27 06:37:51,928 | INFO     | could have reported an average CPU frequency of 2651 MHz (4 samples)
[2025-11-26 22:38:25] 2025-11-27 06:37:51,928 | INFO     | ..............................
[2025-11-26 22:38:25] 2025-11-27 06:37:51,928 | INFO     | . Timing measurements:
[2025-11-26 22:38:25] 2025-11-27 06:37:51,928 | INFO     | . get job = 0 s
[2025-11-26 22:38:25] 2025-11-27 06:37:51,928 | INFO     | . initial setup = 2 s
[2025-11-26 22:38:25] 2025-11-27 06:37:51,928 | INFO     | . payload setup = 5 s
[2025-11-26 22:38:25] 2025-11-27 06:37:51,928 | INFO     | . stage-in = 0 s
[2025-11-26 22:38:25] 2025-11-27 06:37:51,928 | INFO     | . payload execution = 68 s
[2025-11-26 22:38:25] 2025-11-27 06:37:51,928 | INFO     | . stage-out = 0 s
[2025-11-26 22:38:25] 2025-11-27 06:37:51,928 | INFO     | . log creation = 0 s
[2025-11-26 22:38:25] 2025-11-27 06:37:51,928 | INFO     | ..............................
[2025-11-26 22:38:25] 2025-11-27 06:37:51,928 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 22:38:25] 2025-11-27 06:37:51,929 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6891584273/pilotlog.txt
[2025-11-26 22:38:25] 2025-11-27 06:37:51,942 | WARNING  | 
[2025-11-26 22:38:25] [begin log extracts]
[2025-11-26 22:38:25] - Log from pilotlog.txt -
[2025-11-26 22:38:25] 2025-11-27 06:37:51,925 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6891584273/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 22:38:25] 2025-11-27 06:37:51,926 | INFO     | extracted standard info from prmon json
[2025-11-26 22:38:25] 2025-11-27 06:37:51,926 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 22:38:25] 2025-11-27 06:37:51,926 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 22:38:25] 2025-11-27 06:37:51,926 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-26 22:38:25] 2025-11-27 06:37:51,926 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 22:38:25] 2025-11-27 06:37:51,927 | WARNING  | wrong length of table data, x=[1764225282.0, 1764225343.0], y=[1153.0, 253963.0] (must be same and length>=4)
[2025-11-26 22:38:25] 2025-11-27 06:37:51,928 | INFO     | could have reported an average CPU frequency of 2651 MHz (4 samples)
[2025-11-26 22:38:25] 2025-11-27 06:37:51,928 | INFO     | ..............................
[2025-11-26 22:38:25] 2025-11-27 06:37:51,928 | INFO     | . Timing measurements:
[2025-11-26 22:38:25] 2025-11-27 06:37:51,928 | INFO     | . get job = 0 s
[2025-11-26 22:38:25] 2025-11-27 06:37:51,928 | INFO     | . initial setup = 2 s
[2025-11-26 22:38:25] 2025-11-27 06:37:51,928 | INFO     | . payload setup = 5 s
[2025-11-26 22:38:25] 2025-11-27 06:37:51,928 | INFO     | . stage-in = 0 s
[2025-11-26 22:38:25] 2025-11-27 06:37:51,928 | INFO     | . payload execution = 68 s
[2025-11-26 22:38:25] 2025-11-27 06:37:51,928 | INFO     | . stage-out = 0 s
[2025-11-26 22:38:25] 2025-11-27 06:37:51,928 | INFO     | . log creation = 0 s
[2025-11-26 22:38:25] 2025-11-27 06:37:51,928 | INFO     | ..............................
[2025-11-26 22:38:25] 2025-11-27 06:37:51,928 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 22:38:25] 2025-11-27 06:37:51,929 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6891584273/pilotlog.txt
[2025-11-26 22:38:25] [end log extracts]
[2025-11-26 22:38:25] 2025-11-27 06:37:51,943 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-26 22:38:25] 2025-11-27 06:37:51,943 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-26 22:38:25] 2025-11-27 06:37:52,290 | INFO     | 
[2025-11-26 22:38:25] 2025-11-27 06:37:52,290 | INFO     | job summary report
[2025-11-26 22:38:25] 2025-11-27 06:37:52,290 | INFO     | --------------------------------------------------
[2025-11-26 22:38:25] 2025-11-27 06:37:52,290 | INFO     | PanDA job id: 6891584273
[2025-11-26 22:38:25] 2025-11-27 06:37:52,290 | INFO     | task id: 47493068
[2025-11-26 22:38:25] 2025-11-27 06:37:52,290 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-26 22:35:41,170 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-26 22:38:25] 2025-11-27 06:37:52,290 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-26 22:38:25] 2025-11-27 06:37:52,290 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 22:38:25] 2025-11-27 06:37:52,290 | INFO     | pilot state: failed 
[2025-11-26 22:38:25] 2025-11-27 06:37:52,290 | INFO     | transexitcode: 65
[2025-11-26 22:38:25] 2025-11-27 06:37:52,291 | INFO     | exeerrorcode: 65
[2025-11-26 22:38:25] 2025-11-27 06:37:52,291 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-26 22:38:25] 2025-11-27 06:37:52,291 | INFO     | exitcode: 65
[2025-11-26 22:38:25] 2025-11-27 06:37:52,291 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-26 22:38:25] 2025-11-27 06:37:52,291 | INFO     | cpuconsumptiontime: 42 s
[2025-11-26 22:38:25] 2025-11-27 06:37:52,291 | INFO     | nevents: 0
[2025-11-26 22:38:25] 2025-11-27 06:37:52,291 | INFO     | neventsw: 0
[2025-11-26 22:38:25] 2025-11-27 06:37:52,291 | INFO     | pid: 3966900
[2025-11-26 22:38:25] 2025-11-27 06:37:52,291 | INFO     | pgrp: 3966900
[2025-11-26 22:38:25] 2025-11-27 06:37:52,291 | INFO     | corecount: 12
[2025-11-26 22:38:25] 2025-11-27 06:37:52,291 | INFO     | event service: False
[2025-11-26 22:38:25] 2025-11-27 06:37:52,291 | INFO     | sizes: {0: 2284301, 4: 2284563, 11: 2284591, 77: 2310029, 78: 2314379, 201: 2314517}
[2025-11-26 22:38:25] 2025-11-27 06:37:52,291 | INFO     | --------------------------------------------------
[2025-11-26 22:38:25] 2025-11-27 06:37:52,291 | INFO     | 
[2025-11-26 22:38:25] 2025-11-27 06:37:52,291 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-26 22:38:25] 2025-11-27 06:37:52,311 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 22:38:25] 2025-11-27 06:37:52,312 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 22:38:25] 2025-11-27 06:37:52,312 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 22:38:25] 2025-11-27 06:37:52,312 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 22:38:25] 2025-11-27 06:37:52,312 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 22:38:25] 2025-11-27 06:37:52,312 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 22:38:25] 2025-11-27 06:37:52,312 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 22:38:25] 2025-11-27 06:37:52,312 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 22:38:25] 2025-11-27 06:37:52,312 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 22:38:25] 2025-11-27 06:37:52,312 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 22:38:25] 2025-11-27 06:37:52,312 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 22:38:25] 2025-11-27 06:37:52,312 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 22:38:25] 2025-11-27 06:37:52,312 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 22:38:25] 2025-11-27 06:37:52,312 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 22:38:25] 2025-11-27 06:37:52,312 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 22:38:25] 2025-11-27 06:37:52,312 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 22:38:25] 2025-11-27 06:37:52,312 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 22:38:25] 2025-11-27 06:37:52,312 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 22:38:25] 2025-11-27 06:37:52,312 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 22:38:25] 2025-11-27 06:37:52,313 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 22:38:25] 2025-11-27 06:37:52,313 | INFO     | job 6891584273 has completed (purged errors)
[2025-11-26 22:38:25] 2025-11-27 06:37:52,313 | INFO     | overall cleanup function is called
[2025-11-26 22:38:25] 2025-11-27 06:37:53,319 | INFO     | --- collectZombieJob: --- 10, [3966900]
[2025-11-26 22:38:25] 2025-11-27 06:37:53,319 | INFO     | zombie collector waiting for pid 3966900
[2025-11-26 22:38:25] 2025-11-27 06:37:53,319 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 22:38:25] 2025-11-27 06:37:53,320 | INFO     | collected zombie processes
[2025-11-26 22:38:25] 2025-11-27 06:37:53,320 | INFO     | will attempt to kill all subprocesses of pid=3966900
[2025-11-26 22:38:25] 2025-11-27 06:37:53,510 | INFO     | process IDs to be killed: [3966900] (in reverse order)
[2025-11-26 22:38:25] 2025-11-27 06:37:53,595 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 22:38:25] 2025-11-27 06:37:53,596 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 22:38:25] 2025-11-27 06:37:53,604 | INFO     | did not find any defunct processes belonging to 3966900
[2025-11-26 22:38:25] 2025-11-27 06:37:53,612 | INFO     | did not find any defunct processes belonging to 3966900
[2025-11-26 22:38:25] 2025-11-27 06:37:53,613 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 22:38:25] 2025-11-27 06:37:53,613 | INFO     | ready for new job
[2025-11-26 22:38:25] 2025-11-27 06:37:53,613 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 22:38:25] 2025-11-27 06:37:53,615 | INFO     | ***************************************
[2025-11-26 22:38:25] 2025-11-27 06:37:53,615 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 22:38:25] 2025-11-27 06:37:53,615 | INFO     | ***************************************
[2025-11-26 22:38:25] 2025-11-27 06:37:53,615 | INFO     | 
[2025-11-26 22:38:25] 2025-11-27 06:37:53,617 | INFO     | architecture information:
[2025-11-26 22:38:25] 2025-11-27 06:37:53,617 | INFO     | executing command: cat /etc/os-release
[2025-11-26 22:38:25] 2025-11-27 06:37:53,677 | INFO     | cat /etc/os-release:
[2025-11-26 22:38:25] NAME="CentOS Linux"
[2025-11-26 22:38:25] VERSION="7 (Core)"
[2025-11-26 22:38:25] ID="centos"
[2025-11-26 22:38:25] ID_LIKE="rhel fedora"
[2025-11-26 22:38:25] VERSION_ID="7"
[2025-11-26 22:38:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 22:38:25] ANSI_COLOR="0;31"
[2025-11-26 22:38:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 22:38:25] HOME_URL="https://www.centos.org/"
[2025-11-26 22:38:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 22:38:25] 
[2025-11-26 22:38:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 22:38:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 22:38:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 22:38:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 22:38:25] 
[2025-11-26 22:38:25] 2025-11-27 06:37:53,678 | INFO     | ***************************************
[2025-11-26 22:38:25] 2025-11-27 06:37:54,181 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-26 22:38:25] 2025-11-27 06:37:54,213 | INFO     | sufficient remaining disk space (1727884427264 B)
[2025-11-26 22:38:25] 2025-11-27 06:37:54,213 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 22:38:25] 2025-11-27 06:37:54,213 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 22:38:25] 2025-11-27 06:37:54,213 | INFO     | update_server=False
[2025-11-26 22:38:25] 2025-11-27 06:37:54,213 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 22:38:25] 2025-11-27 06:37:54,214 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 22:38:25] 2025-11-27 06:37:54,214 | INFO     | aborting loop
[2025-11-26 22:38:25] 2025-11-27 06:37:54,361 | INFO     | all data control threads have been joined
[2025-11-26 22:38:25] 2025-11-27 06:37:54,736 | INFO     | all payload control threads have been joined
[2025-11-26 22:38:25] 2025-11-27 06:37:54,787 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 22:38:25] 2025-11-27 06:37:54,802 | INFO     | all job control threads have been joined
[2025-11-26 22:38:25] 2025-11-27 06:37:55,219 | INFO     | [job] job monitor thread has finished
[2025-11-26 22:38:25] 2025-11-27 06:37:55,219 | INFO     | [job] retrieve thread has finished
[2025-11-26 22:38:25] 2025-11-27 06:37:55,268 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 22:38:25] 2025-11-27 06:37:55,367 | INFO     | [data] control thread has finished
[2025-11-26 22:38:25] 2025-11-27 06:37:55,639 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 22:38:25] 2025-11-27 06:37:55,741 | INFO     | [payload] control thread has finished
[2025-11-26 22:38:25] 2025-11-27 06:37:55,783 | INFO     | [data] copytool_in thread has finished
[2025-11-26 22:38:25] 2025-11-27 06:37:55,808 | INFO     | [job] control thread has finished
[2025-11-26 22:38:25] 2025-11-27 06:37:55,875 | INFO     | [payload] validate_post thread has finished
[2025-11-26 22:38:25] 2025-11-27 06:37:56,336 | INFO     | [job] validate thread has finished
[2025-11-26 22:38:25] 2025-11-27 06:37:56,490 | INFO     | [payload] failed_post thread has finished
[2025-11-26 22:38:25] 2025-11-27 06:37:56,527 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 22:38:25] 2025-11-27 06:37:56,594 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 22:38:25] 2025-11-27 06:37:56,794 | INFO     | [data] copytool_out thread has finished
[2025-11-26 22:38:25] 2025-11-27 06:37:56,978 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 22:38:25] 2025-11-27 06:37:57,014 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 22:38:25] 2025-11-27 06:37:58,020 | INFO     | [job] queue monitor thread has finished
[2025-11-26 22:38:25] 2025-11-27 06:38:00,987 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 22:38:25] 2025-11-27 06:38:16,956 | INFO     | [monitor] cgroup control has ended
[2025-11-26 22:38:25] 2025-11-27 06:38:18,994 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140349564741440)>', '<ExcThread(monitor, started 140348592486144)>']
[2025-11-26 22:38:25] 2025-11-27 06:38:24,020 | INFO     | all workflow threads have been joined
[2025-11-26 22:38:25] 2025-11-27 06:38:24,020 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 22:38:25] 2025-11-27 06:38:24,021 | INFO     | traces error code: 0
[2025-11-26 22:38:25] 2025-11-27 06:38:24,021 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 22:38:25] 2025-11-27 06:38:24,629 | INFO     | PID=3953203 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 22:38:25] 2025-11-27 06:38:24,630 | INFO     | .. there are 34 such processes running
[2025-11-26 22:38:25] 2025-11-27 06:38:24,631 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 22:38:25] 2025-11-27 06:38:24,631 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 22:38:25] 2025-11-27 06:38:24,631 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 22:38:25] 2025-11-27 06:38:24,631 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 22:38:25] 2025-11-27 06:38:24,631 | INFO     | [monitor] control thread has ended
[2025-11-26 22:38:25] 2025-11-27 06:38:24,818 [wrapper] ==== pilot stdout END ====
[2025-11-26 22:38:25] 2025-11-27 06:38:24,820 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 22:38:25] 2025-11-27 06:38:24,823 [wrapper] pilotpid: 3953203
[2025-11-26 22:38:25] 2025-11-27 06:38:24,826 [wrapper] Pilot exit status: 0
[2025-11-26 22:38:25] 2025-11-27 06:38:24,881 [wrapper] pandaids: 6891584273
[2025-11-26 22:38:25] 2025-11-27 06:38:24,958 [wrapper] cleanup supervisor_pilot 3953209 3953204
[2025-11-26 22:38:25] 2025-11-27 06:38:24,985 [wrapper] Test setup, not cleaning
[2025-11-26 22:38:25] 2025-11-27 06:38:25,010 [wrapper] apfmon messages muted
[2025-11-26 22:38:25] 2025-11-27 06:38:25,029 [wrapper] ==== wrapper stdout END ====
[2025-11-26 22:38:25] 2025-11-27 06:38:25,047 [wrapper] ==== wrapper stderr END ====
[2025-11-26 22:38:25]  *** Error codes and diagnostics ***
[2025-11-26 22:38:25]     "exeErrorCode": 65,
[2025-11-26 22:38:25]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-26 22:38:25]     "pilotErrorCode": 1305,
[2025-11-26 22:38:25]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-26 22:38:25]  *** Listing of results directory ***
[2025-11-26 22:38:25] total 402156
[2025-11-26 22:38:25] -rw-r--r--. 1 boinc boinc    576529 Nov 18 08:45 pilot3.tar.gz
[2025-11-26 22:38:25] -rwx------. 1 boinc boinc     36292 Nov 18 09:15 runpilot2-wrapper.sh
[2025-11-26 22:38:25] -rw-r--r--. 1 boinc boinc      5112 Nov 18 09:15 queuedata.json
[2025-11-26 22:38:25] -rw-r--r--. 1 boinc boinc       100 Nov 26 22:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 22:38:25] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 22:34 run_atlas
[2025-11-26 22:38:25] -rw-r--r--. 1 boinc boinc       105 Nov 26 22:34 job.xml
[2025-11-26 22:38:25] -rw-r--r--. 1 boinc boinc      6595 Nov 26 22:34 init_data.xml
[2025-11-26 22:38:25] -rw-r--r--. 2 boinc boinc 407613798 Nov 26 22:34 EVNT.47493065._000452.pool.root.1
[2025-11-26 22:38:25] -rw-r--r--. 2 boinc boinc     15120 Nov 26 22:34 start_atlas.sh
[2025-11-26 22:38:25] drwxrwx--x. 2 boinc boinc      4096 Nov 26 22:34 shared
[2025-11-26 22:38:25] -rw-r--r--. 2 boinc boinc    590098 Nov 26 22:34 input.tar.gz
[2025-11-26 22:38:25] -rw-r--r--. 1 boinc boinc         0 Nov 26 22:34 boinc_lockfile
[2025-11-26 22:38:25] -rw-r--r--. 1 boinc boinc      2773 Nov 26 22:34 pandaJob.out
[2025-11-26 22:38:25] -rw-------. 1 boinc boinc    991554 Nov 26 22:34 agis_schedconf.cvmfs.json
[2025-11-26 22:38:25] -rw-------. 1 boinc boinc   1516240 Nov 26 22:34 agis_ddmendpoints.agis.ALL.json
[2025-11-26 22:38:25] drwx------. 5 boinc boinc      4096 Nov 26 22:34 pilot3
[2025-11-26 22:38:25] -rw-r--r--. 1 boinc boinc       523 Nov 26 22:35 boinc_task_state.xml
[2025-11-26 22:38:25] -rw-------. 1 boinc boinc      1016 Nov 26 22:35 memory_monitor_summary.json
[2025-11-26 22:38:25] -rw-------. 1 boinc boinc     47819 Nov 26 22:35 log.47493068._004516.job.log.tgz.1
[2025-11-26 22:38:25] -rw-------. 1 boinc boinc     10334 Nov 26 22:37 heartbeat.json
[2025-11-26 22:38:25] -rw-r--r--. 1 boinc boinc      8192 Nov 26 22:38 boinc_mmap_file
[2025-11-26 22:38:25] -rw-r--r--. 1 boinc boinc        23 Nov 26 22:38 wrapper_checkpoint.txt
[2025-11-26 22:38:25] -rw-------. 1 boinc boinc        95 Nov 26 22:38 pilot_heartbeat.json
[2025-11-26 22:38:25] -rw-------. 1 boinc boinc       823 Nov 26 22:38 pilotlog.txt
[2025-11-26 22:38:25] -rw-------. 1 boinc boinc     94199 Nov 26 22:38 log.47493068._004516.job.log.1
[2025-11-26 22:38:25] -rw-------. 1 boinc boinc       186 Nov 26 22:38 output.list
[2025-11-26 22:38:25] -rw-r--r--. 1 boinc boinc       620 Nov 26 22:38 runtime_log
[2025-11-26 22:38:25] -rw-------. 1 boinc boinc    163840 Nov 26 22:38 result.tar.gz
[2025-11-26 22:38:25] -rw-------. 1 boinc boinc       644 Nov 26 22:38 zFILDm8Tef8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmAZFKDm7xVN3m.diag
[2025-11-26 22:38:25] -rw-r--r--. 1 boinc boinc      8528 Nov 26 22:38 runtime_log.err
[2025-11-26 22:38:25] -rw-r--r--. 1 boinc boinc     22451 Nov 26 22:38 stderr.txt
[2025-11-26 22:38:25] No HITS result produced
[2025-11-26 22:38:25]  *** Contents of shared directory: ***
[2025-11-26 22:38:25] total 398824
[2025-11-26 22:38:25] -rw-r--r--. 2 boinc boinc 407613798 Nov 26 22:34 ATLAS.root_0
[2025-11-26 22:38:25] -rw-r--r--. 2 boinc boinc     15120 Nov 26 22:34 start_atlas.sh
[2025-11-26 22:38:25] -rw-r--r--. 2 boinc boinc    590098 Nov 26 22:34 input.tar.gz
[2025-11-26 22:38:25] -rw-------. 1 boinc boinc    163840 Nov 26 22:38 result.tar.gz
22:38:26 (3949465): run_atlas exited; CPU time 40.982925
22:38:26 (3949465): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN