Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
06:21:28 (1577882): wrapper (7.7.26015): starting
06:21:28 (1577882): wrapper: running run_atlas (--nthreads 9)
[2025-11-27 06:21:28] Arguments: --nthreads 9
[2025-11-27 06:21:28] Threads: 9
[2025-11-27 06:21:28] Checking for CVMFS
[2025-11-27 06:21:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 06:21:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 06:21:30] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 06:21:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 06:21:31] 2.13.3.0 11322 31423 336888 153362 1 322 32650347 32935937 22572 16776704 0 57983008 99.590 60965085 39487 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 06:21:31] CVMFS is ok
[2025-11-27 06:21:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 06:21:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 06:21:31] Further information can be found at the LHC@home message board.
[2025-11-27 06:21:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 06:21:31] Checking for apptainer binary...
[2025-11-27 06:21:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 06:21:31] Running /usr/bin/apptainer --version
[2025-11-27 06:21:31] apptainer version 1.4.4-1.el9
[2025-11-27 06:21:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 06:21:31] c6-1-26-4.aglt2.org
[2025-11-27 06:21:31] apptainer works
[2025-11-27 06:21:31] Set ATHENA_PROC_NUMBER=9
[2025-11-27 06:21:31] Set ATHENA_CORE_NUMBER=9
[2025-11-27 06:21:31] Starting ATLAS job with PandaID=6898178771
[2025-11-27 06:21:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 19:22:28]  *** The last 200 lines of the pilot log: ***
[2025-11-27 19:22:28] 2025-11-27 23:34:26,620 | INFO     | time since job start (43912s) is within the limit (172800.0s)
[2025-11-27 19:22:28] 2025-11-27 23:34:27,093 | INFO     | monitor loop #2437: job 0:6898178771 is in state 'finished'
[2025-11-27 19:22:28] 2025-11-27 23:34:27,093 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 19:22:28] 2025-11-27 23:34:27,331 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 19:22:28] 2025-11-27 23:34:27,334 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2891.2955
[2025-11-27 19:22:28] 2025-11-27 23:34:27,344 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6898178771/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 19:22:28] 2025-11-27 23:34:27,345 | INFO     | extracted standard info from prmon json
[2025-11-27 19:22:28] 2025-11-27 23:34:27,345 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 19:22:28] 2025-11-27 23:34:27,346 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 19:22:28] 2025-11-27 23:34:27,357 | INFO     | fitting pss+swap vs Time
[2025-11-27 19:22:28] 2025-11-27 23:34:27,358 | INFO     | sum of square deviations: 114740256301.63246
[2025-11-27 19:22:28] 2025-11-27 23:34:27,367 | INFO     | sum of deviations: 982471411419.239
[2025-11-27 19:22:28] 2025-11-27 23:34:27,368 | INFO     | mean x: 1764264555.9220057
[2025-11-27 19:22:28] 2025-11-27 23:34:27,368 | INFO     | mean y: 3040168.8077994427
[2025-11-27 19:22:28] 2025-11-27 23:34:27,368 | INFO     | intersect: -15103597590.628412
[2025-11-27 19:22:28] 2025-11-27 23:34:27,369 | INFO     | chi2: 11.814627557245618
[2025-11-27 19:22:28] 2025-11-27 23:34:27,370 | INFO     | sum of square deviations: 112360054350.67554
[2025-11-27 19:22:28] 2025-11-27 23:34:27,379 | INFO     | sum of deviations: 1237733000934.4556
[2025-11-27 19:22:28] 2025-11-27 23:34:27,379 | INFO     | mean x: 1764264403.4530153
[2025-11-27 19:22:28] 2025-11-27 23:34:27,379 | INFO     | mean y: 3056517.8345021037
[2025-11-27 19:22:28] 2025-11-27 23:34:27,379 | INFO     | intersect: -19431681985.516968
[2025-11-27 19:22:28] 2025-11-27 23:34:27,381 | INFO     | chi2: 8.596137604819079
[2025-11-27 19:22:28] 2025-11-27 23:34:27,381 | INFO     | current chi2=8.596137604819079 (change=27.24156929054204 %)
[2025-11-27 19:22:28] 2025-11-27 23:34:27,382 | INFO     | sum of square deviations: 110013015810.82928
[2025-11-27 19:22:28] 2025-11-27 23:34:27,391 | INFO     | sum of deviations: 1433167022507.1455
[2025-11-27 19:22:28] 2025-11-27 23:34:27,391 | INFO     | mean x: 1764264250.9844632
[2025-11-27 19:22:28] 2025-11-27 23:34:27,391 | INFO     | mean y: 3069199.922316384
[2025-11-27 19:22:28] 2025-11-27 23:34:27,391 | INFO     | intersect: -22980441658.892876
[2025-11-27 19:22:28] 2025-11-27 23:34:27,392 | INFO     | chi2: 6.486132966263526
[2025-11-27 19:22:28] 2025-11-27 23:34:27,392 | INFO     | current chi2=6.486132966263526 (change=24.545961634823808 %)
[2025-11-27 19:22:28] 2025-11-27 23:34:27,392 | INFO     | right removable region: 707
[2025-11-27 19:22:28] 2025-11-27 23:34:27,393 | INFO     | sum of square deviations: 112358117600.67555
[2025-11-27 19:22:28] 2025-11-27 23:34:27,402 | INFO     | sum of deviations: 674685203436.6646
[2025-11-27 19:22:28] 2025-11-27 23:34:27,403 | INFO     | mean x: 1764264708.4530153
[2025-11-27 19:22:28] 2025-11-27 23:34:27,403 | INFO     | mean y: 3059872.1093969145
[2025-11-27 19:22:28] 2025-11-27 23:34:27,403 | INFO     | intersect: -10590952551.356066
[2025-11-27 19:22:28] 2025-11-27 23:34:27,404 | INFO     | chi2: 7.571825930924591
[2025-11-27 19:22:28] 2025-11-27 23:34:27,404 | INFO     | current chi2=7.571825930924591 (change=35.91142933421563 %)
[2025-11-27 19:22:28] 2025-11-27 23:34:27,405 | INFO     | sum of square deviations: 110009272201.72325
[2025-11-27 19:22:28] 2025-11-27 23:34:27,415 | INFO     | sum of deviations: 535762566926.42944
[2025-11-27 19:22:28] 2025-11-27 23:34:27,415 | INFO     | mean x: 1764264860.980226
[2025-11-27 19:22:28] 2025-11-27 23:34:27,415 | INFO     | mean y: 3068876.316384181
[2025-11-27 19:22:28] 2025-11-27 23:34:27,415 | INFO     | intersect: -8589180229.046386
[2025-11-27 19:22:28] 2025-11-27 23:34:27,416 | INFO     | chi2: 6.621078116234026
[2025-11-27 19:22:28] 2025-11-27 23:34:27,416 | INFO     | current chi2=6.621078116234026 (change=12.556387631780519 %)
[2025-11-27 19:22:28] 2025-11-27 23:34:27,416 | INFO     | left removable region: 20
[2025-11-27 19:22:28] 2025-11-27 23:34:27,417 | INFO     | sum of square deviations: 100505623112.59654
[2025-11-27 19:22:28] 2025-11-27 23:34:27,426 | INFO     | sum of deviations: 932514333784.5894
[2025-11-27 19:22:28] 2025-11-27 23:34:27,426 | INFO     | mean x: 1764264830.5866084
[2025-11-27 19:22:28] 2025-11-27 23:34:27,426 | INFO     | mean y: 3106282.7379912664
[2025-11-27 19:22:28] 2025-11-27 23:34:27,426 | INFO     | intersect: -16366149408.26878
[2025-11-27 19:22:28] 2025-11-27 23:34:27,427 | INFO     | chi2: 0.9054497552236211
[2025-11-27 19:22:28] 2025-11-27 23:34:27,427 | INFO     | current memory leak: 9.28 B/s (using 687 data points, chi2=0.91)
[2025-11-27 19:22:28] 2025-11-27 23:34:27,429 | INFO     | could have reported an average CPU frequency of 2893 MHz (27 samples)
[2025-11-27 19:22:28] 2025-11-27 23:34:27,430 | INFO     | ..............................
[2025-11-27 19:22:28] 2025-11-27 23:34:27,430 | INFO     | . Timing measurements:
[2025-11-27 19:22:28] 2025-11-27 23:34:27,430 | INFO     | . get job = 0 s
[2025-11-27 19:22:28] 2025-11-27 23:34:27,431 | INFO     | . initial setup = 6 s
[2025-11-27 19:22:28] 2025-11-27 23:34:27,431 | INFO     | . payload setup = 40 s
[2025-11-27 19:22:28] 2025-11-27 23:34:27,431 | INFO     | . stage-in = 0 s
[2025-11-27 19:22:28] 2025-11-27 23:34:27,431 | INFO     | . payload execution = 43778 s
[2025-11-27 19:22:28] 2025-11-27 23:34:27,431 | INFO     | . stage-out = 9 s
[2025-11-27 19:22:28] 2025-11-27 23:34:27,431 | INFO     | . log creation = 1 s
[2025-11-27 19:22:28] 2025-11-27 23:34:27,431 | INFO     | ..............................
[2025-11-27 19:22:28] 2025-11-27 23:34:28,489 | INFO     | 
[2025-11-27 19:22:28] 2025-11-27 23:34:28,489 | INFO     | job summary report
[2025-11-27 19:22:28] 2025-11-27 23:34:28,489 | INFO     | --------------------------------------------------
[2025-11-27 19:22:28] 2025-11-27 23:34:28,489 | INFO     | PanDA job id: 6898178771
[2025-11-27 19:22:28] 2025-11-27 23:34:28,489 | INFO     | task id: 47556161
[2025-11-27 19:22:28] 2025-11-27 23:34:28,489 | INFO     | errors: (none)
[2025-11-27 19:22:28] 2025-11-27 23:34:28,489 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 19:22:28] 2025-11-27 23:34:28,489 | INFO     | pilot state: finished 
[2025-11-27 19:22:28] 2025-11-27 23:34:28,490 | INFO     | transexitcode: 0
[2025-11-27 19:22:28] 2025-11-27 23:34:28,490 | INFO     | exeerrorcode: 0
[2025-11-27 19:22:28] 2025-11-27 23:34:28,490 | INFO     | exeerrordiag: 
[2025-11-27 19:22:28] 2025-11-27 23:34:28,490 | INFO     | exitcode: 0
[2025-11-27 19:22:28] 2025-11-27 23:34:28,490 | INFO     | exitmsg: OK
[2025-11-27 19:22:28] 2025-11-27 23:34:28,490 | INFO     | cpuconsumptiontime: 239599 s
[2025-11-27 19:22:28] 2025-11-27 23:34:28,490 | INFO     | nevents: 1000
[2025-11-27 19:22:28] 2025-11-27 23:34:28,490 | INFO     | neventsw: 0
[2025-11-27 19:22:28] 2025-11-27 23:34:28,490 | INFO     | pid: 1597369
[2025-11-27 19:22:28] 2025-11-27 23:34:28,490 | INFO     | pgrp: 1597369
[2025-11-27 19:22:28] 2025-11-27 23:34:28,490 | INFO     | corecount: 9
[2025-11-27 19:22:28] 2025-11-27 23:34:28,490 | INFO     | event service: False
[2025-11-27 19:22:28] 2025-11-27 23:34:28,490 | INFO     | sizes: {0: 2284093, 1: 2284292, 12: 2284292, 23: 2284320, 29: 2284610, 34: 2284638, 43823: 2329849, 43824: 2329848, 43833: 2338898, 43835: 2338954, 43851: 2339200}
[2025-11-27 19:22:28] 2025-11-27 23:34:28,490 | INFO     | --------------------------------------------------
[2025-11-27 19:22:28] 2025-11-27 23:34:28,490 | INFO     | 
[2025-11-27 19:22:28] 2025-11-27 23:34:28,490 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-27 19:22:28] 2025-11-27 23:34:28,546 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 19:22:28] 2025-11-27 23:34:28,547 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 19:22:28] 2025-11-27 23:34:28,547 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 19:22:28] 2025-11-27 23:34:28,547 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 19:22:28] 2025-11-27 23:34:28,547 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 19:22:28] 2025-11-27 23:34:28,547 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 19:22:28] 2025-11-27 23:34:28,547 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 19:22:28] 2025-11-27 23:34:28,547 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 19:22:28] 2025-11-27 23:34:28,547 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 19:22:28] 2025-11-27 23:34:28,547 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 19:22:28] 2025-11-27 23:34:28,547 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 19:22:28] 2025-11-27 23:34:28,548 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 19:22:28] 2025-11-27 23:34:28,548 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 19:22:28] 2025-11-27 23:34:28,548 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 19:22:28] 2025-11-27 23:34:28,548 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 19:22:28] 2025-11-27 23:34:28,548 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 19:22:28] 2025-11-27 23:34:28,548 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 19:22:28] 2025-11-27 23:34:28,548 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 19:22:28] 2025-11-27 23:34:28,548 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 19:22:28] 2025-11-27 23:34:28,548 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 19:22:28] 2025-11-27 23:34:28,548 | INFO     | job 6898178771 has completed (purged errors)
[2025-11-27 19:22:28] 2025-11-27 23:34:28,548 | INFO     | overall cleanup function is called
[2025-11-27 19:22:28] 2025-11-27 23:34:29,565 | INFO     | --- collectZombieJob: --- 10, [1597369]
[2025-11-27 19:22:28] 2025-11-27 23:34:29,565 | INFO     | zombie collector waiting for pid 1597369
[2025-11-27 19:22:28] 2025-11-27 23:34:29,565 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 19:22:28] 2025-11-27 23:34:29,566 | INFO     | collected zombie processes
[2025-11-27 19:22:28] 2025-11-27 23:34:29,566 | INFO     | will attempt to kill all subprocesses of pid=1597369
[2025-11-27 19:22:28] 2025-11-27 23:34:30,386 | INFO     | process IDs to be killed: [1597369] (in reverse order)
[2025-11-27 19:22:28] 2025-11-27 23:34:30,696 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 19:22:28] 2025-11-27 23:34:30,697 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 19:22:28] 2025-11-27 23:34:30,768 | INFO     | did not find any defunct processes belonging to 1597369
[2025-11-27 19:22:28] 2025-11-27 23:34:30,800 | INFO     | did not find any defunct processes belonging to 1597369
[2025-11-27 19:22:28] 2025-11-27 23:34:30,812 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 19:22:28] 2025-11-27 23:34:30,813 | INFO     | ready for new job
[2025-11-27 19:22:28] 2025-11-27 23:34:30,813 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 19:22:28] 2025-11-27 23:34:30,821 | INFO     | ***************************************
[2025-11-27 19:22:28] 2025-11-27 23:34:30,821 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 19:22:28] 2025-11-27 23:34:30,821 | INFO     | ***************************************
[2025-11-27 19:22:28] 2025-11-27 23:34:30,821 | INFO     | 
[2025-11-27 19:22:28] 2025-11-27 23:34:30,829 | INFO     | architecture information:
[2025-11-27 19:22:28] 2025-11-27 23:34:30,839 | INFO     | executing command: cat /etc/os-release
[2025-11-27 19:22:28] 2025-11-27 23:34:30,857 | INFO     | cat /etc/os-release:
[2025-11-27 19:22:28] NAME="CentOS Linux"
[2025-11-27 19:22:28] VERSION="7 (Core)"
[2025-11-27 19:22:28] ID="centos"
[2025-11-27 19:22:28] ID_LIKE="rhel fedora"
[2025-11-27 19:22:28] VERSION_ID="7"
[2025-11-27 19:22:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 19:22:28] ANSI_COLOR="0;31"
[2025-11-27 19:22:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 19:22:28] HOME_URL="https://www.centos.org/"
[2025-11-27 19:22:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 19:22:28] 
[2025-11-27 19:22:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 19:22:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 19:22:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 19:22:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 19:22:28] 
[2025-11-27 19:22:28] 2025-11-27 23:34:30,857 | INFO     | ***************************************
[2025-11-27 19:22:28] 2025-11-27 23:34:31,362 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-27 19:22:28] 2025-11-27 23:34:31,473 | INFO     | sufficient remaining disk space (70826065920 B)
[2025-11-27 19:22:28] 2025-11-27 23:34:31,474 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 19:22:28] 2025-11-27 23:34:31,474 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 19:22:28] 2025-11-27 23:34:31,474 | INFO     | update_server=False
[2025-11-27 19:22:28] 2025-11-27 23:34:31,474 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 19:22:28] 2025-11-27 23:34:31,475 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 19:22:28] 2025-11-27 23:34:31,481 | INFO     | aborting loop
[2025-11-27 19:22:28] 2025-11-27 23:34:31,481 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 19:22:28] 2025-11-27 23:34:31,749 | INFO     | all job control threads have been joined
[2025-11-27 19:22:28] 2025-11-27 23:34:31,916 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 19:22:28] 2025-11-27 23:34:32,485 | INFO     | [job] job monitor thread has finished
[2025-11-27 19:22:28] 2025-11-27 23:34:32,488 | INFO     | [job] retrieve thread has finished
[2025-11-27 19:22:28] 2025-11-27 23:34:32,527 | INFO     | all payload control threads have been joined
[2025-11-27 19:22:28] 2025-11-27 23:34:32,555 | INFO     | all data control threads have been joined
[2025-11-27 19:22:28] 2025-11-27 23:34:32,755 | INFO     | [job] control thread has finished
[2025-11-27 19:22:28] 2025-11-27 23:34:32,845 | INFO     | [payload] failed_post thread has finished
[2025-11-27 19:22:28] 2025-11-27 23:34:33,253 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 19:22:28] 2025-11-27 23:34:33,297 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 19:22:28] 2025-11-27 23:34:33,469 | INFO     | [job] validate thread has finished
[2025-11-27 19:22:28] 2025-11-27 23:34:33,476 | INFO     | [data] copytool_in thread has finished
[2025-11-27 19:22:28] 2025-11-27 23:34:33,480 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 19:22:28] 2025-11-27 23:34:33,493 | INFO     | [data] copytool_out thread has finished
[2025-11-27 19:22:28] 2025-11-27 23:34:33,514 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 19:22:28] 2025-11-27 23:34:33,520 | INFO     | [payload] validate_post thread has finished
[2025-11-27 19:22:28] 2025-11-27 23:34:33,556 | INFO     | [payload] control thread has finished
[2025-11-27 19:22:28] 2025-11-27 23:34:33,557 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 19:22:28] 2025-11-27 23:34:33,571 | INFO     | [data] control thread has finished
[2025-11-27 19:22:28] 2025-11-27 23:34:34,520 | INFO     | [job] queue monitor thread has finished
[2025-11-27 19:22:28] 2025-11-27 23:34:35,946 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 19:22:28] 2025-11-27 23:34:57,590 | INFO     | [monitor] cgroup control has ended
[2025-11-27 19:22:28] 2025-11-27 23:34:58,611 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140675610187584)>', '<ExcThread(monitor, started 140675127432960)>']
[2025-11-27 19:22:28] 2025-11-27 23:35:03,696 | INFO     | all workflow threads have been joined
[2025-11-27 19:22:28] 2025-11-27 23:35:03,696 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 19:22:28] 2025-11-27 23:35:03,697 | INFO     | traces error code: 0
[2025-11-27 19:22:28] 2025-11-27 23:35:03,697 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 19:22:28] 2025-11-27 23:35:05,527 | INFO     | PID=1587981 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 19:22:28] 2025-11-27 23:35:05,528 | INFO     | .. there are 39 such processes running
[2025-11-27 19:22:28] 2025-11-27 23:35:05,529 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 19:22:28] 2025-11-27 23:35:05,529 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 19:22:28] 2025-11-27 23:35:05,529 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 19:22:28] 2025-11-27 23:35:05,529 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 19:22:28] 2025-11-27 23:35:05,529 | INFO     | [monitor] control thread has ended
[2025-11-27 19:22:28] 2025-11-27 23:35:09,483 [wrapper] ==== pilot stdout END ====
[2025-11-27 19:22:28] 2025-11-27 23:35:09,525 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 19:22:28] 2025-11-27 23:35:09,556 [wrapper] pilotpid: 1587981
[2025-11-27 19:22:28] 2025-11-27 23:35:09,594 [wrapper] Pilot exit status: 0
[2025-11-27 19:22:28] 2025-11-27 23:35:09,699 [wrapper] pandaids: 6898178771
[2025-11-27 19:22:28] 2025-11-27 23:35:10,052 [wrapper] cleanup supervisor_pilot 3995311 1587982
[2025-11-27 19:22:28] 2025-11-27 23:35:10,057 [wrapper] Test setup, not cleaning
[2025-11-27 19:22:28] 2025-11-27 23:35:10,073 [wrapper] apfmon messages muted
[2025-11-27 19:22:28] 2025-11-27 23:35:10,080 [wrapper] ==== wrapper stdout END ====
[2025-11-27 19:22:28] 2025-11-27 23:35:10,083 [wrapper] ==== wrapper stderr END ====
[2025-11-27 19:22:28]  *** Error codes and diagnostics ***
[2025-11-27 19:22:28]     "exeErrorCode": 0,
[2025-11-27 19:22:28]     "exeErrorDiag": "",
[2025-11-27 19:22:28]     "pilotErrorCode": 0,
[2025-11-27 19:22:28]     "pilotErrorDiag": "",
[2025-11-27 19:22:28]  *** Listing of results directory ***
[2025-11-27 19:22:28] total 1311496
[2025-11-27 19:22:28] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 22:33 pilot3.tar.gz
[2025-11-27 19:22:28] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 23:15 queuedata.json
[2025-11-27 19:22:28] -rwx------. 1 boincer umatlas     36292 Nov 25 23:19 runpilot2-wrapper.sh
[2025-11-27 19:22:28] -rw-r--r--. 1 boincer umatlas       100 Nov 27 06:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 19:22:28] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 06:21 run_atlas
[2025-11-27 19:22:28] -rw-r--r--. 1 boincer umatlas       105 Nov 27 06:21 job.xml
[2025-11-27 19:22:28] -rw-r--r--. 2 boincer umatlas 408293916 Nov 27 06:21 EVNT.47483658._002480.pool.root.1
[2025-11-27 19:22:28] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 06:21 start_atlas.sh
[2025-11-27 19:22:28] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 06:21 shared
[2025-11-27 19:22:28] -rw-r--r--. 2 boincer umatlas    590105 Nov 27 06:21 input.tar.gz
[2025-11-27 19:22:28] -rw-r--r--. 1 boincer umatlas         0 Nov 27 06:21 boinc_lockfile
[2025-11-27 19:22:28] -rw-r--r--. 1 boincer umatlas      2785 Nov 27 06:21 pandaJob.out
[2025-11-27 19:22:28] -rw-------. 1 boincer umatlas        57 Nov 27 06:21 setup.sh.local
[2025-11-27 19:22:28] -rw-------. 1 boincer umatlas    991572 Nov 27 06:22 agis_schedconf.cvmfs.json
[2025-11-27 19:22:28] drwx------. 5 boincer umatlas      4096 Nov 27 06:22 pilot3
[2025-11-27 19:22:28] -rw-r--r--. 1 boincer umatlas       533 Nov 27 18:15 boinc_task_state.xml
[2025-11-27 19:22:28] -rw-------. 1 boincer umatlas 916176993 Nov 27 18:33 HITS.47556161._004623.pool.root.1
[2025-11-27 19:22:28] -rw-------. 1 boincer umatlas      1056 Nov 27 18:33 memory_monitor_summary.json
[2025-11-27 19:22:28] -rw-------. 1 boincer umatlas   1516240 Nov 27 18:34 agis_ddmendpoints.agis.ALL.json
[2025-11-27 19:22:28] -rw-------. 1 boincer umatlas   2027441 Nov 27 18:34 log.47556161._004623.job.log.tgz.1
[2025-11-27 19:22:28] -rw-------. 1 boincer umatlas      8620 Nov 27 18:34 heartbeat.json
[2025-11-27 19:22:28] -rw-------. 1 boincer umatlas        95 Nov 27 18:35 pilot_heartbeat.json
[2025-11-27 19:22:28] -rw-------. 1 boincer umatlas       823 Nov 27 18:35 pilotlog.txt
[2025-11-27 19:22:28] -rw-------. 1 boincer umatlas   5266327 Nov 27 18:35 log.47556161._004623.job.log.1
[2025-11-27 19:22:28] -rw-------. 1 boincer umatlas       353 Nov 27 18:35 output.list
[2025-11-27 19:22:28] -rw-r--r--. 1 boincer umatlas       620 Nov 27 18:35 runtime_log
[2025-11-27 19:22:28] -rw-------. 1 boincer umatlas   7311360 Nov 27 18:35 result.tar.gz
[2025-11-27 19:22:28] -rw-r--r--. 1 boincer umatlas      9348 Nov 27 18:35 runtime_log.err
[2025-11-27 19:22:28] -rw-------. 1 boincer umatlas       661 Nov 27 18:35 24BNDmwAMi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmquJKDmiLrRrn.diag
[2025-11-27 19:22:28] -rw-r--r--. 1 boincer umatlas      6846 Nov 27 19:22 init_data.xml
[2025-11-27 19:22:28] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 19:22 boinc_mmap_file
[2025-11-27 19:22:28] -rw-r--r--. 1 boincer umatlas        29 Nov 27 19:22 wrapper_checkpoint.txt
[2025-11-27 19:22:28] -rw-r--r--. 1 boincer umatlas     21380 Nov 27 19:22 stderr.txt
[2025-11-27 19:22:28] HITS file was successfully produced:
[2025-11-27 19:22:29] -rw-------. 1 boincer umatlas 916176993 Nov 27 18:33 shared/HITS.pool.root.1
[2025-11-27 19:22:29]  *** Contents of shared directory: ***
[2025-11-27 19:22:29] total 1301176
[2025-11-27 19:22:29] -rw-r--r--. 2 boincer umatlas 408293916 Nov 27 06:21 ATLAS.root_0
[2025-11-27 19:22:29] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 06:21 start_atlas.sh
[2025-11-27 19:22:29] -rw-r--r--. 2 boincer umatlas    590105 Nov 27 06:21 input.tar.gz
[2025-11-27 19:22:29] -rw-------. 1 boincer umatlas 916176993 Nov 27 18:33 HITS.pool.root.1
[2025-11-27 19:22:29] -rw-------. 1 boincer umatlas   7311360 Nov 27 18:35 result.tar.gz
19:22:30 (1577882): run_atlas exited; CPU time 240459.566958
19:22:30 (1577882): called boinc_finish(0)

</stderr_txt>
]]>

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