Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:18:13 (3210550): wrapper (7.7.26015): starting
08:18:13 (3210550): wrapper: running run_atlas (--nthreads 3)
[2025-11-27 08:18:13] Arguments: --nthreads 3
[2025-11-27 08:18:13] Threads: 3
[2025-11-27 08:18:13] Checking for CVMFS
[2025-11-27 08:18:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 08:18:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 08:18:13] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 08:18:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 08:18:14] 2.9.2.0 2210343 228 64244 153352 3 88 35928296 36864000 0 130560 0 3005093 99.999 10720 20497 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-27 08:18:14] CVMFS is ok
[2025-11-27 08:18:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 08:18:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 08:18:14] Further information can be found at the LHC@home message board.
[2025-11-27 08:18:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 08:18:14] Checking for apptainer binary...
[2025-11-27 08:18:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 08:18:14] Running /usr/bin/apptainer --version
[2025-11-27 08:18:14] apptainer version 1.4.1-1.1
[2025-11-27 08:18:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 08:18:14] thA335
[2025-11-27 08:18:14] apptainer works
[2025-11-27 08:18:14] Set ATHENA_PROC_NUMBER=3
[2025-11-27 08:18:14] Set ATHENA_CORE_NUMBER=3
[2025-11-27 08:18:14] Starting ATLAS job with PandaID=6898178693
[2025-11-27 08:18:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 08:22:31]  *** The last 200 lines of the pilot log: ***
[2025-11-27 08:22:31] 2025-11-27 07:21:43,648 | INFO     | update_server=False
[2025-11-27 08:22:31] 2025-11-27 07:21:43,648 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 08:22:31] 2025-11-27 07:21:43,648 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 08:22:31] 2025-11-27 07:21:43,923 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 08:22:31] 2025-11-27 07:21:43,923 | INFO     | aborting loop
[2025-11-27 08:22:31] 2025-11-27 07:21:44,368 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 08:22:31] 2025-11-27 07:21:44,429 | INFO     | all job control threads have been joined
[2025-11-27 08:22:31] 2025-11-27 07:21:44,613 | INFO     | all data control threads have been joined
[2025-11-27 08:22:31] 2025-11-27 07:21:44,654 | INFO     | [job] queue monitor thread has finished
[2025-11-27 08:22:31] 2025-11-27 07:21:44,655 | INFO     | [job] retrieve thread has finished
[2025-11-27 08:22:31] 2025-11-27 07:21:44,671 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 08:22:31] 2025-11-27 07:21:44,812 | INFO     | [data] copytool_in thread has finished
[2025-11-27 08:22:31] 2025-11-27 07:21:44,861 | INFO     | [payload] failed_post thread has finished
[2025-11-27 08:22:31] 2025-11-27 07:21:44,929 | INFO     | [job] job monitor thread has finished
[2025-11-27 08:22:31] 2025-11-27 07:21:45,015 | INFO     | all payload control threads have been joined
[2025-11-27 08:22:31] 2025-11-27 07:21:45,385 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 08:22:31] 2025-11-27 07:21:45,435 | INFO     | [job] control thread has finished
[2025-11-27 08:22:31] 2025-11-27 07:21:45,496 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 08:22:31] 2025-11-27 07:21:45,619 | INFO     | [data] control thread has finished
[2025-11-27 08:22:31] 2025-11-27 07:21:45,926 | INFO     | [payload] validate_post thread has finished
[2025-11-27 08:22:31] 2025-11-27 07:21:46,021 | INFO     | [payload] control thread has finished
[2025-11-27 08:22:31] 2025-11-27 07:21:46,035 | INFO     | [job] validate thread has finished
[2025-11-27 08:22:31] 2025-11-27 07:21:46,109 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 08:22:31] 2025-11-27 07:21:46,375 | INFO     | [data] copytool_out thread has finished
[2025-11-27 08:22:31] 2025-11-27 07:21:46,679 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 08:22:31] 2025-11-27 07:21:50,686 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 08:22:31] 2025-11-27 07:22:13,610 | INFO     | PID=3214287 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 08:22:31] 2025-11-27 07:22:13,610 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 08:22:31] 2025-11-27 07:22:13,610 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 08:22:31] 2025-11-27 07:22:13,610 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 08:22:31] 2025-11-27 07:22:24,667 | INFO     | [monitor] cgroup control has ended
[2025-11-27 08:22:31] 2025-11-27 07:22:26,533 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140186335086400)>', '<ExcThread(monitor, started 140185694095104)>']
[2025-11-27 08:22:31] 2025-11-27 07:22:26,679 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 08:22:31] 2025-11-27 07:22:26,680 | INFO     | [monitor] control thread has ended
[2025-11-27 08:22:31] 2025-11-27 07:22:31,559 | INFO     | all workflow threads have been joined
[2025-11-27 08:22:31] 2025-11-27 07:22:31,559 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 08:22:31] 2025-11-27 07:22:31,559 | INFO     | traces error code: 0
[2025-11-27 08:22:31] 2025-11-27 07:22:31,559 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 08:22:31] 2025-11-27 07:22:31,602 [wrapper] ==== pilot stdout END ====
[2025-11-27 08:22:31] 2025-11-27 07:22:31,606 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 08:22:31] 2025-11-27 07:22:31,609 [wrapper] pilotpid: 3214287
[2025-11-27 08:22:31] 2025-11-27 07:22:31,612 [wrapper] Pilot exit status: 0
[2025-11-27 08:22:31] 2025-11-27 07:22:31,619 [wrapper] pandaids: 6898178693
[2025-11-27 08:22:31] 2025-11-27 07:22:31,636 [wrapper] cleanup supervisor_pilot 3214293 3214288
[2025-11-27 08:22:31] 2025-11-27 07:22:31,639 [wrapper] Test setup, not cleaning
[2025-11-27 08:22:31] 2025-11-27 07:22:31,641 [wrapper] apfmon messages muted
[2025-11-27 08:22:31] 2025-11-27 07:22:31,644 [wrapper] ==== wrapper stdout END ====
[2025-11-27 08:22:31] 2025-11-27 07:22:31,647 [wrapper] ==== wrapper stderr END ====
[2025-11-27 08:22:31]  *** Error codes and diagnostics ***
[2025-11-27 08:22:31]     "exeErrorCode": 65,
[2025-11-27 08:22:31]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-27 08:22:31]     "pilotErrorCode": 1305,
[2025-11-27 08:22:31]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-27 08:22:31]  *** Listing of results directory ***
[2025-11-27 08:22:31] total 405224
[2025-11-27 08:22:31] -rw-r--r-- 1 boinc boinc    576529 Nov 26 04:33 pilot3.tar.gz
[2025-11-27 08:22:31] -rw-r--r-- 1 boinc boinc      5112 Nov 26 05:15 queuedata.json
[2025-11-27 08:22:31] -rwx------ 1 boinc boinc     36292 Nov 26 05:19 runpilot2-wrapper.sh
[2025-11-27 08:22:31] -rw-r--r-- 1 boinc boinc       100 Nov 27 08:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 08:22:31] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 08:18 run_atlas
[2025-11-27 08:22:31] -rw-r--r-- 1 boinc boinc       105 Nov 27 08:18 job.xml
[2025-11-27 08:22:31] -rw-r--r-- 2 boinc boinc 410747668 Nov 27 08:18 EVNT.47483658._002477.pool.root.1
[2025-11-27 08:22:31] -rw-r--r-- 2 boinc boinc    590108 Nov 27 08:18 input.tar.gz
[2025-11-27 08:22:31] -rw-r--r-- 2 boinc boinc     15847 Nov 27 08:18 start_atlas.sh
[2025-11-27 08:22:31] drwxrwx--x 2 boinc boinc      4096 Nov 27 08:18 shared
[2025-11-27 08:22:31] -rw-r--r-- 1 boinc boinc         0 Nov 27 08:18 boinc_setup_complete
[2025-11-27 08:22:31] -rw-r--r-- 1 boinc boinc      6196 Nov 27 08:18 init_data.xml
[2025-11-27 08:22:31] -rw-r--r-- 1 boinc boinc         0 Nov 27 08:18 boinc_lockfile
[2025-11-27 08:22:31] -rw-r--r-- 1 boinc boinc      2785 Nov 27 08:18 pandaJob.out
[2025-11-27 08:22:31] -rw------- 1 boinc boinc    991570 Nov 27 08:18 agis_schedconf.cvmfs.json
[2025-11-27 08:22:31] -rw------- 1 boinc boinc   1516240 Nov 27 08:18 agis_ddmendpoints.agis.ALL.json
[2025-11-27 08:22:31] drwx------ 5 boinc boinc      4096 Nov 27 08:18 pilot3
[2025-11-27 08:22:31] -rw-r--r-- 1 boinc boinc       522 Nov 27 08:19 boinc_task_state.xml
[2025-11-27 08:22:31] -rw------- 1 boinc boinc       947 Nov 27 08:19 memory_monitor_summary.json
[2025-11-27 08:22:31] -rw------- 1 boinc boinc     55630 Nov 27 08:19 log.47556161._004596.job.log.tgz.1
[2025-11-27 08:22:31] -rw------- 1 boinc boinc        95 Nov 27 08:21 pilot_heartbeat.json
[2025-11-27 08:22:31] -rw------- 1 boinc boinc      8404 Nov 27 08:21 heartbeat.json
[2025-11-27 08:22:31] -rw-r--r-- 1 boinc boinc      8192 Nov 27 08:22 boinc_mmap_file
[2025-11-27 08:22:31] -rw-r--r-- 1 boinc boinc        22 Nov 27 08:22 wrapper_checkpoint.txt
[2025-11-27 08:22:31] -rw------- 1 boinc boinc      4752 Nov 27 08:22 pilotlog.txt
[2025-11-27 08:22:31] -rw------- 1 boinc boinc     93881 Nov 27 08:22 log.47556161._004596.job.log.1
[2025-11-27 08:22:31] -rw------- 1 boinc boinc       186 Nov 27 08:22 output.list
[2025-11-27 08:22:31] -rw-r--r-- 1 boinc boinc       620 Nov 27 08:22 runtime_log
[2025-11-27 08:22:31] -rw------- 1 boinc boinc    174080 Nov 27 08:22 result.tar.gz
[2025-11-27 08:22:31] -rw-r--r-- 1 boinc boinc      8744 Nov 27 08:22 runtime_log.err
[2025-11-27 08:22:31] -rw------- 1 boinc boinc       649 Nov 27 08:22 BWqMDmwAMi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmauJKDmmlEZMm.diag
[2025-11-27 08:22:31] -rw-r--r-- 1 boinc boinc      7790 Nov 27 08:22 stderr.txt
[2025-11-27 08:22:31] No HITS result produced
[2025-11-27 08:22:31]  *** Contents of shared directory: ***
[2025-11-27 08:22:31] total 401896
[2025-11-27 08:22:31] -rw-r--r-- 2 boinc boinc 410747668 Nov 27 08:18 ATLAS.root_0
[2025-11-27 08:22:31] -rw-r--r-- 2 boinc boinc    590108 Nov 27 08:18 input.tar.gz
[2025-11-27 08:22:31] -rw-r--r-- 2 boinc boinc     15847 Nov 27 08:18 start_atlas.sh
[2025-11-27 08:22:31] -rw------- 1 boinc boinc    174080 Nov 27 08:22 result.tar.gz
08:22:33 (3210550): run_atlas exited; CPU time 31.558104
08:22:33 (3210550): called boinc_finish(0)

</stderr_txt>
]]>

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