Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:57:23 (4794): wrapper (7.7.26015): starting
05:57:23 (4794): wrapper: running run_atlas (--nthreads 8)
[2025-11-29 05:57:23] Arguments: --nthreads 8
[2025-11-29 05:57:23] Threads: 8
[2025-11-29 05:57:23] Checking for CVMFS
[2025-11-29 05:57:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-29 05:57:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-29 05:57:24] Running cvmfs_config stat atlas.cern.ch
[2025-11-29 05:57:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-29 05:57:26] 2.11.2.0 23125 176044 136136 153430 3 85 23609591 25165825 1336 130560 10 58954575 99.894 28061697 1984 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-29 05:57:26] CVMFS is ok
[2025-11-29 05:57:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-29 05:57:26] Checking for apptainer binary...
[2025-11-29 05:57:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-29 05:57:26] Running /usr/bin/apptainer --version
[2025-11-29 05:57:26] apptainer version 1.3.2-1.el7
[2025-11-29 05:57:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-29 05:57:37] cg-vwn409.simple-grid.lan
[2025-11-29 05:57:37] apptainer works
[2025-11-29 05:57:37] Set ATHENA_PROC_NUMBER=8
[2025-11-29 05:57:37] Set ATHENA_CORE_NUMBER=8
[2025-11-29 05:57:37] Starting ATLAS job with PandaID=6898214227
[2025-11-29 05:57:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-30 05:39:51]  *** The last 200 lines of the pilot log: ***
[2025-11-30 05:39:51] 2025-11-30 04:38:46,327 | INFO     | time since job start (85053s) is within the limit (172800.0s)
[2025-11-30 05:39:51] 2025-11-30 04:38:46,722 | INFO     | monitor loop #5730: job 0:6898214227 is in state 'finished'
[2025-11-30 05:39:51] 2025-11-30 04:38:46,722 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 05:39:51] 2025-11-30 04:38:48,337 | INFO     | time since job start (85055s) is within the limit (172800.0s)
[2025-11-30 05:39:51] 2025-11-30 04:38:49,226 | INFO     | monitor loop #5731: job 0:6898214227 is in state 'finished'
[2025-11-30 05:39:51] 2025-11-30 04:38:49,226 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 05:39:51] 2025-11-30 04:38:50,344 | INFO     | time since job start (85057s) is within the limit (172800.0s)
[2025-11-30 05:39:51] 2025-11-30 04:38:51,556 | INFO     | PID=8593 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-30 05:39:51] 2025-11-30 04:38:51,556 | INFO     | .. there are 9 such processes running
[2025-11-30 05:39:51] 2025-11-30 04:38:51,734 | INFO     | monitor loop #5732: job 0:6898214227 is in state 'finished'
[2025-11-30 05:39:51] 2025-11-30 04:38:51,734 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 05:39:51] 2025-11-30 04:38:52,557 | INFO     | time since job start (85059s) is within the limit (172800.0s)
[2025-11-30 05:39:51] 2025-11-30 04:38:54,239 | INFO     | monitor loop #5733: job 0:6898214227 is in state 'finished'
[2025-11-30 05:39:51] 2025-11-30 04:38:54,239 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 05:39:51] 2025-11-30 04:38:54,563 | INFO     | time since job start (85061s) is within the limit (172800.0s)
[2025-11-30 05:39:51] 2025-11-30 04:38:55,865 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-30 05:39:51] 2025-11-30 04:38:55,867 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-30 05:39:51] 2025-11-30 04:38:55,870 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6898214227/memory_monitor_summary.json (trf name=prmon)
[2025-11-30 05:39:51] 2025-11-30 04:38:55,870 | INFO     | extracted standard info from prmon json
[2025-11-30 05:39:51] 2025-11-30 04:38:55,871 | INFO     | extracted standard memory fields from prmon json
[2025-11-30 05:39:51] 2025-11-30 04:38:55,871 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-30 05:39:51] 2025-11-30 04:38:55,911 | INFO     | fitting pss+swap vs Time
[2025-11-30 05:39:51] 2025-11-30 04:38:55,913 | INFO     | sum of square deviations: 823808849990.8773
[2025-11-30 05:39:51] 2025-11-30 04:38:55,976 | INFO     | sum of deviations: 2622910051508.0728
[2025-11-30 05:39:51] 2025-11-30 04:38:55,977 | INFO     | mean x: 1764435208.1111913
[2025-11-30 05:39:51] 2025-11-30 04:38:55,977 | INFO     | mean y: 2848844.36967509
[2025-11-30 05:39:51] 2025-11-30 04:38:55,977 | INFO     | intersect: -5614904403.414481
[2025-11-30 05:39:51] 2025-11-30 04:38:55,979 | INFO     | chi2: 20.679700814122505
[2025-11-30 05:39:51] 2025-11-30 04:38:55,981 | INFO     | sum of square deviations: 814919348044.6802
[2025-11-30 05:39:51] 2025-11-30 04:38:56,035 | INFO     | sum of deviations: 3082970812282.3086
[2025-11-30 05:39:51] 2025-11-30 04:38:56,035 | INFO     | mean x: 1764435055.6152174
[2025-11-30 05:39:51] 2025-11-30 04:38:56,035 | INFO     | mean y: 2856735.652173913
[2025-11-30 05:39:51] 2025-11-30 04:38:56,036 | INFO     | intersect: -6672284540.207166
[2025-11-30 05:39:51] 2025-11-30 04:38:56,037 | INFO     | chi2: 17.442130580152384
[2025-11-30 05:39:51] 2025-11-30 04:38:56,037 | INFO     | current chi2=17.442130580152384 (change=15.655788558406666 %)
[2025-11-30 05:39:51] 2025-11-30 04:38:56,037 | INFO     | right removable region: 1379
[2025-11-30 05:39:51] 2025-11-30 04:38:56,039 | INFO     | sum of square deviations: 814918409254.6797
[2025-11-30 05:39:51] 2025-11-30 04:38:56,102 | INFO     | sum of deviations: 2055015225863.8325
[2025-11-30 05:39:51] 2025-11-30 04:38:56,102 | INFO     | mean x: 1764435360.6152174
[2025-11-30 05:39:51] 2025-11-30 04:38:56,103 | INFO     | mean y: 2858584.9507246376
[2025-11-30 05:39:51] 2025-11-30 04:38:56,103 | INFO     | intersect: -4446594869.454707
[2025-11-30 05:39:51] 2025-11-30 04:38:56,104 | INFO     | chi2: 16.266244381276817
[2025-11-30 05:39:51] 2025-11-30 04:38:56,105 | INFO     | current chi2=16.266244381276817 (change=21.341974298930218 %)
[2025-11-30 05:39:51] 2025-11-30 04:38:56,105 | INFO     | left removable region: 10
[2025-11-30 05:39:51] 2025-11-30 04:38:56,106 | INFO     | sum of square deviations: 795586177854.8893
[2025-11-30 05:39:51] 2025-11-30 04:38:56,162 | INFO     | sum of deviations: 2158616884920.0896
[2025-11-30 05:39:51] 2025-11-30 04:38:56,163 | INFO     | mean x: 1764435330.1241782
[2025-11-30 05:39:51] 2025-11-30 04:38:56,163 | INFO     | mean y: 2876251.1935719503
[2025-11-30 05:39:51] 2025-11-30 04:38:56,163 | INFO     | intersect: -4784461691.535616
[2025-11-30 05:39:51] 2025-11-30 04:38:56,164 | INFO     | chi2: 9.41351754500783
[2025-11-30 05:39:51] 2025-11-30 04:38:56,165 | INFO     | current memory leak: 2.71 B/s (using 1369 data points, chi2=9.41)
[2025-11-30 05:39:51] 2025-11-30 04:38:56,166 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-11-30 05:39:51] 2025-11-30 04:38:56,166 | INFO     | ..............................
[2025-11-30 05:39:51] 2025-11-30 04:38:56,166 | INFO     | . Timing measurements:
[2025-11-30 05:39:51] 2025-11-30 04:38:56,166 | INFO     | . get job = 0 s
[2025-11-30 05:39:51] 2025-11-30 04:38:56,166 | INFO     | . initial setup = 10 s
[2025-11-30 05:39:51] 2025-11-30 04:38:56,166 | INFO     | . payload setup = 164 s
[2025-11-30 05:39:51] 2025-11-30 04:38:56,166 | INFO     | . stage-in = 0 s
[2025-11-30 05:39:51] 2025-11-30 04:38:56,166 | INFO     | . payload execution = 84592 s
[2025-11-30 05:39:51] 2025-11-30 04:38:56,167 | INFO     | . stage-out = 4 s
[2025-11-30 05:39:51] 2025-11-30 04:38:56,167 | INFO     | . log creation = 1 s
[2025-11-30 05:39:51] 2025-11-30 04:38:56,167 | INFO     | ..............................
[2025-11-30 05:39:51] 2025-11-30 04:38:56,293 | INFO     | 
[2025-11-30 05:39:51] 2025-11-30 04:38:56,293 | INFO     | job summary report
[2025-11-30 05:39:51] 2025-11-30 04:38:56,293 | INFO     | --------------------------------------------------
[2025-11-30 05:39:51] 2025-11-30 04:38:56,293 | INFO     | PanDA job id: 6898214227
[2025-11-30 05:39:51] 2025-11-30 04:38:56,293 | INFO     | task id: 47556161
[2025-11-30 05:39:51] 2025-11-30 04:38:56,293 | INFO     | errors: (none)
[2025-11-30 05:39:51] 2025-11-30 04:38:56,294 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-30 05:39:51] 2025-11-30 04:38:56,294 | INFO     | pilot state: finished 
[2025-11-30 05:39:51] 2025-11-30 04:38:56,294 | INFO     | transexitcode: 0
[2025-11-30 05:39:51] 2025-11-30 04:38:56,294 | INFO     | exeerrorcode: 0
[2025-11-30 05:39:51] 2025-11-30 04:38:56,294 | INFO     | exeerrordiag: 
[2025-11-30 05:39:51] 2025-11-30 04:38:56,294 | INFO     | exitcode: 0
[2025-11-30 05:39:51] 2025-11-30 04:38:56,294 | INFO     | exitmsg: OK
[2025-11-30 05:39:51] 2025-11-30 04:38:56,294 | INFO     | cpuconsumptiontime: 321166 s
[2025-11-30 05:39:51] 2025-11-30 04:38:56,294 | INFO     | nevents: 1000
[2025-11-30 05:39:51] 2025-11-30 04:38:56,294 | INFO     | neventsw: 0
[2025-11-30 05:39:51] 2025-11-30 04:38:56,294 | INFO     | pid: 15220
[2025-11-30 05:39:51] 2025-11-30 04:38:56,294 | INFO     | pgrp: 15220
[2025-11-30 05:39:51] 2025-11-30 04:38:56,294 | INFO     | corecount: 8
[2025-11-30 05:39:51] 2025-11-30 04:38:56,295 | INFO     | event service: False
[2025-11-30 05:39:51] 2025-11-30 04:38:56,295 | INFO     | sizes: {0: 2283436, 1: 2284121, 2: 2284320, 12: 2284320, 23: 2284348, 34: 2284376, 45: 2284532, 55: 2284560, 66: 2284588, 77: 2284616, 87: 2284672, 98: 2284980, 10
[2025-11-30 05:39:51] 2025-11-30 04:38:56,295 | INFO     | --------------------------------------------------
[2025-11-30 05:39:51] 2025-11-30 04:38:56,295 | INFO     | 
[2025-11-30 05:39:51] 2025-11-30 04:38:56,295 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-11-30 05:39:51] 2025-11-30 04:38:56,570 | INFO     | time since job start (85063s) is within the limit (172800.0s)
[2025-11-30 05:39:51] 2025-11-30 04:38:56,899 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-30 05:39:51] 2025-11-30 04:38:56,899 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-30 05:39:51] 2025-11-30 04:38:56,899 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-30 05:39:51] 2025-11-30 04:38:56,900 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-30 05:39:51] 2025-11-30 04:38:56,900 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-30 05:39:51] 2025-11-30 04:38:56,900 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-30 05:39:51] 2025-11-30 04:38:56,900 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-30 05:39:51] 2025-11-30 04:38:56,900 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-30 05:39:51] 2025-11-30 04:38:56,900 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-30 05:39:51] 2025-11-30 04:38:56,900 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-30 05:39:51] 2025-11-30 04:38:56,900 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-30 05:39:51] 2025-11-30 04:38:56,900 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-30 05:39:51] 2025-11-30 04:38:56,900 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-30 05:39:51] 2025-11-30 04:38:56,900 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-30 05:39:51] 2025-11-30 04:38:56,901 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-30 05:39:51] 2025-11-30 04:38:56,901 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-30 05:39:51] 2025-11-30 04:38:56,901 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-30 05:39:51] 2025-11-30 04:38:56,901 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-30 05:39:51] 2025-11-30 04:38:56,901 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-30 05:39:51] 2025-11-30 04:38:56,901 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-30 05:39:51] 2025-11-30 04:38:56,901 | INFO     | job 6898214227 has completed (purged errors)
[2025-11-30 05:39:51] 2025-11-30 04:38:56,901 | INFO     | overall cleanup function is called
[2025-11-30 05:39:51] 2025-11-30 04:38:57,916 | INFO     | --- collectZombieJob: --- 10, [15220]
[2025-11-30 05:39:51] 2025-11-30 04:38:57,916 | INFO     | zombie collector waiting for pid 15220
[2025-11-30 05:39:51] 2025-11-30 04:38:57,916 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-30 05:39:51] 2025-11-30 04:38:57,916 | INFO     | collected zombie processes
[2025-11-30 05:39:51] 2025-11-30 04:38:57,916 | INFO     | will attempt to kill all subprocesses of pid=15220
[2025-11-30 05:39:51] 2025-11-30 04:38:58,016 | INFO     | process IDs to be killed: [15220] (in reverse order)
[2025-11-30 05:39:51] 2025-11-30 04:38:58,709 | WARNING  | found no corresponding commands to process id(s)
[2025-11-30 05:39:51] 2025-11-30 04:38:58,710 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-30 05:39:51] 2025-11-30 04:38:58,713 | INFO     | did not find any defunct processes belonging to 15220
[2025-11-30 05:39:51] 2025-11-30 04:38:58,715 | INFO     | did not find any defunct processes belonging to 15220
[2025-11-30 05:39:51] 2025-11-30 04:38:58,763 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-30 05:39:51] 2025-11-30 04:38:58,763 | INFO     | ready for new job
[2025-11-30 05:39:51] 2025-11-30 04:38:58,763 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-30 05:39:51] 2025-11-30 04:38:58,768 | INFO     | ***************************************
[2025-11-30 05:39:51] 2025-11-30 04:38:58,769 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-30 05:39:51] 2025-11-30 04:38:58,769 | INFO     | ***************************************
[2025-11-30 05:39:51] 2025-11-30 04:38:58,769 | INFO     | 
[2025-11-30 05:39:51] 2025-11-30 04:38:58,769 | INFO     | pilot is running in a VM
[2025-11-30 05:39:51] 2025-11-30 04:38:58,769 | INFO     | architecture information:
[2025-11-30 05:39:51] 2025-11-30 04:38:58,784 | INFO     | executing command: cat /etc/os-release
[2025-11-30 05:39:51] 2025-11-30 04:38:58,959 | INFO     | cat /etc/os-release:
[2025-11-30 05:39:51] NAME="CentOS Linux"
[2025-11-30 05:39:51] VERSION="7 (Core)"
[2025-11-30 05:39:51] ID="centos"
[2025-11-30 05:39:51] ID_LIKE="rhel fedora"
[2025-11-30 05:39:51] VERSION_ID="7"
[2025-11-30 05:39:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-30 05:39:51] ANSI_COLOR="0;31"
[2025-11-30 05:39:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-30 05:39:51] HOME_URL="https://www.centos.org/"
[2025-11-30 05:39:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-30 05:39:51] 
[2025-11-30 05:39:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-30 05:39:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-30 05:39:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-30 05:39:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-30 05:39:51] 
[2025-11-30 05:39:51] 2025-11-30 04:38:58,960 | INFO     | ***************************************
[2025-11-30 05:39:51] 2025-11-30 04:38:59,463 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-11-30 05:39:51] 2025-11-30 04:38:59,636 | INFO     | sufficient remaining disk space (488020901888 B)
[2025-11-30 05:39:51] 2025-11-30 04:38:59,637 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-30 05:39:51] 2025-11-30 04:38:59,637 | INFO     | current server update state: UPDATING_FINAL
[2025-11-30 05:39:51] 2025-11-30 04:38:59,637 | INFO     | update_server=False
[2025-11-30 05:39:51] 2025-11-30 04:38:59,637 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-30 05:39:51] 2025-11-30 04:38:59,642 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-30 05:39:51] 2025-11-30 04:38:59,839 | INFO     | all payload control threads have been joined
[2025-11-30 05:39:51] 2025-11-30 04:39:00,285 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-30 05:39:51] 2025-11-30 04:39:00,285 | INFO     | aborting loop
[2025-11-30 05:39:51] 2025-11-30 04:39:00,422 | INFO     | all data control threads have been joined
[2025-11-30 05:39:51] 2025-11-30 04:39:00,646 | INFO     | [job] retrieve thread has finished
[2025-11-30 05:39:51] 2025-11-30 04:39:00,845 | INFO     | [payload] control thread has finished
[2025-11-30 05:39:51] 2025-11-30 04:39:00,918 | INFO     | [payload] validate_pre thread has finished
[2025-11-30 05:39:51] 2025-11-30 04:39:01,045 | INFO     | [payload] failed_post thread has finished
[2025-11-30 05:39:51] 2025-11-30 04:39:01,069 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-30 05:39:51] 2025-11-30 04:39:01,135 | INFO     | all job control threads have been joined
[2025-11-30 05:39:51] 2025-11-30 04:39:01,270 | INFO     | [data] copytool_in thread has finished
[2025-11-30 05:39:51] 2025-11-30 04:39:01,291 | INFO     | [job] job monitor thread has finished
[2025-11-30 05:39:51] 2025-11-30 04:39:01,310 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-30 05:39:51] 2025-11-30 04:39:01,428 | INFO     | [data] control thread has finished
[2025-11-30 05:39:51] 2025-11-30 04:39:01,553 | INFO     | [payload] validate_post thread has finished
[2025-11-30 05:39:51] 2025-11-30 04:39:01,649 | INFO     | [data] copytool_out thread has finished
[2025-11-30 05:39:51] 2025-11-30 04:39:02,020 | INFO     | [payload] execute_payloads thread has finished
[2025-11-30 05:39:51] 2025-11-30 04:39:02,026 | INFO     | [job] validate thread has finished
[2025-11-30 05:39:51] 2025-11-30 04:39:02,063 | INFO     | [job] create_data_payload thread has finished
[2025-11-30 05:39:51] 2025-11-30 04:39:02,124 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-30 05:39:51] 2025-11-30 04:39:02,141 | INFO     | [job] control thread has finished
[2025-11-30 05:39:51] 2025-11-30 04:39:02,316 | INFO     | [job] queue monitor thread has finished
[2025-11-30 05:39:51] 2025-11-30 04:39:05,078 | INFO     | [data] queue_monitor thread has finished
[2025-11-30 05:39:51] 2025-11-30 04:39:29,748 | INFO     | PID=8593 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-30 05:39:51] 2025-11-30 04:39:29,748 | INFO     | .. there are 9 such processes running
[2025-11-30 05:39:51] 2025-11-30 04:39:29,748 | INFO     | found 0 job(s) in 20 queues
[2025-11-30 05:39:51] 2025-11-30 04:39:29,748 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-30 05:39:51] 2025-11-30 04:39:29,748 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-30 05:39:51] 2025-11-30 04:39:40,968 | INFO     | [monitor] cgroup control has ended
[2025-11-30 05:39:51] 2025-11-30 04:39:41,975 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139817374267200)>', '<ExcThread(monitor, started 139816771491584)>']
[2025-11-30 05:39:51] 2025-11-30 04:39:42,823 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-30 05:39:51] 2025-11-30 04:39:42,823 | INFO     | [monitor] control thread has ended
[2025-11-30 05:39:51] 2025-11-30 04:39:47,001 | INFO     | all workflow threads have been joined
[2025-11-30 05:39:51] 2025-11-30 04:39:47,001 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-30 05:39:51] 2025-11-30 04:39:47,001 | INFO     | traces error code: 0
[2025-11-30 05:39:51] 2025-11-30 04:39:47,001 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-30 05:39:51] 2025-11-30 04:39:47,311 [wrapper] ==== pilot stdout END ====
[2025-11-30 05:39:51] 2025-11-30 04:39:47,400 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-30 05:39:51] 2025-11-30 04:39:47,495 [wrapper] pilotpid: 8593
[2025-11-30 05:39:51] 2025-11-30 04:39:47,570 [wrapper] Pilot exit status: 0
[2025-11-30 05:39:51] 2025-11-30 04:39:47,859 [wrapper] pandaids: 6898214227
[2025-11-30 05:39:51] 2025-11-30 04:39:48,587 [wrapper] cleanup supervisor_pilot 11809 8594
[2025-11-30 05:39:51] 2025-11-30 04:39:48,651 [wrapper] Test setup, not cleaning
[2025-11-30 05:39:51] 2025-11-30 04:39:48,717 [wrapper] apfmon messages muted
[2025-11-30 05:39:51] 2025-11-30 04:39:48,818 [wrapper] ==== wrapper stdout END ====
[2025-11-30 05:39:51] 2025-11-30 04:39:48,917 [wrapper] ==== wrapper stderr END ====
[2025-11-30 05:39:51]  *** Error codes and diagnostics ***
[2025-11-30 05:39:51]     "exeErrorCode": 0,
[2025-11-30 05:39:51]     "exeErrorDiag": "",
[2025-11-30 05:39:51]     "pilotErrorCode": 0,
[2025-11-30 05:39:51]     "pilotErrorDiag": "",
[2025-11-30 05:39:51]  *** Listing of results directory ***
[2025-11-30 05:39:51] total 1334796
[2025-11-30 05:39:51] -rw-r--r--. 1 boinc boinc    576529 Nov 26 04:33 pilot3.tar.gz
[2025-11-30 05:39:51] -rw-r--r--. 1 boinc boinc      5112 Nov 26 05:31 queuedata.json
[2025-11-30 05:39:51] -rwx------. 1 boinc boinc     36292 Nov 26 05:31 runpilot2-wrapper.sh
[2025-11-30 05:39:51] -rw-r--r--. 1 boinc boinc       100 Nov 29 05:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-30 05:39:51] -rwxr-xr-x. 1 boinc boinc      7986 Nov 29 05:57 run_atlas
[2025-11-30 05:39:51] -rw-r--r--. 1 boinc boinc       105 Nov 29 05:57 job.xml
[2025-11-30 05:39:51] -rw-r--r--. 1 boinc boinc      6393 Nov 29 05:57 init_data.xml
[2025-11-30 05:39:51] -rw-r--r--. 2 boinc boinc 411811685 Nov 29 05:57 EVNT.47483658._002487.pool.root.1
[2025-11-30 05:39:51] -rw-r--r--. 2 boinc boinc     15847 Nov 29 05:57 start_atlas.sh
[2025-11-30 05:39:51] drwxrwx--x. 2 boinc boinc        68 Nov 29 05:57 shared
[2025-11-30 05:39:51] -rw-r--r--. 2 boinc boinc    590111 Nov 29 05:57 input.tar.gz
[2025-11-30 05:39:51] -rw-r--r--. 1 boinc boinc         0 Nov 29 05:57 boinc_lockfile
[2025-11-30 05:39:51] -rw-r--r--. 1 boinc boinc      2785 Nov 29 05:57 pandaJob.out
[2025-11-30 05:39:51] -rw-------. 1 boinc boinc    991834 Nov 29 06:01 agis_schedconf.cvmfs.json
[2025-11-30 05:39:51] drwx------. 5 boinc boinc      4096 Nov 29 06:01 pilot3
[2025-11-30 05:39:51] -rw-r--r--. 1 boinc boinc       533 Nov 30 05:14 boinc_task_state.xml
[2025-11-30 05:39:51] -rw-------. 1 boinc boinc 923515767 Nov 30 05:36 HITS.47556161._004698.pool.root.1
[2025-11-30 05:39:51] -rw-------. 1 boinc boinc      1033 Nov 30 05:37 memory_monitor_summary.json
[2025-11-30 05:39:51] -rw-------. 1 boinc boinc   1516240 Nov 30 05:37 agis_ddmendpoints.agis.ALL.json
[2025-11-30 05:39:51] -rw-------. 1 boinc boinc   2473859 Nov 30 05:37 log.47556161._004698.job.log.tgz.1
[2025-11-30 05:39:51] -rw-------. 1 boinc boinc        95 Nov 30 05:38 pilot_heartbeat.json
[2025-11-30 05:39:51] -rw-------. 1 boinc boinc      7958 Nov 30 05:38 heartbeat.json
[2025-11-30 05:39:51] -rw-r--r--. 1 boinc boinc      8192 Nov 30 05:39 boinc_mmap_file
[2025-11-30 05:39:51] -rw-r--r--. 1 boinc boinc        29 Nov 30 05:39 wrapper_checkpoint.txt
[2025-11-30 05:39:51] -rw-------. 1 boinc boinc      4883 Nov 30 05:39 pilotlog.txt
[2025-11-30 05:39:51] -rw-------. 1 boinc boinc  11325970 Nov 30 05:39 log.47556161._004698.job.log.1
[2025-11-30 05:39:51] -rw-------. 1 boinc boinc       353 Nov 30 05:39 output.list
[2025-11-30 05:39:51] -rw-r--r--. 1 boinc boinc       620 Nov 30 05:39 runtime_log
[2025-11-30 05:39:51] -rw-------. 1 boinc boinc  13824000 Nov 30 05:39 result.tar.gz
[2025-11-30 05:39:51] -rw-r--r--. 1 boinc boinc      8817 Nov 30 05:39 runtime_log.err
[2025-11-30 05:39:51] -rw-------. 1 boinc boinc       662 Nov 30 05:39 1h2NDmzMMi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmiwMKDm7kDTkm.diag
[2025-11-30 05:39:51] -rw-r--r--. 1 boinc boinc     21502 Nov 30 05:39 stderr.txt
[2025-11-30 05:39:52] HITS file was successfully produced:
[2025-11-30 05:39:52] -rw-------. 1 boinc boinc 923515767 Nov 30 05:36 shared/HITS.pool.root.1
[2025-11-30 05:39:52]  *** Contents of shared directory: ***
[2025-11-30 05:39:52] total 1318128
[2025-11-30 05:39:52] -rw-r--r--. 2 boinc boinc 411811685 Nov 29 05:57 ATLAS.root_0
[2025-11-30 05:39:52] -rw-r--r--. 2 boinc boinc     15847 Nov 29 05:57 start_atlas.sh
[2025-11-30 05:39:52] -rw-r--r--. 2 boinc boinc    590111 Nov 29 05:57 input.tar.gz
[2025-11-30 05:39:52] -rw-------. 1 boinc boinc 923515767 Nov 30 05:36 HITS.pool.root.1
[2025-11-30 05:39:52] -rw-------. 1 boinc boinc  13824000 Nov 30 05:39 result.tar.gz
05:39:53 (4794): run_atlas exited; CPU time 321737.537276
05:39:53 (4794): called boinc_finish(0)

</stderr_txt>
]]>

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