Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
03:15:21 (661396): wrapper (7.7.26015): starting
03:15:21 (661396): wrapper: running run_atlas (--nthreads 10)
[2025-11-27 03:15:21] Arguments: --nthreads 10
[2025-11-27 03:15:21] Threads: 10
[2025-11-27 03:15:21] Checking for CVMFS
[2025-11-27 03:15:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 03:15:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 03:15:21] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 03:15:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 03:15:42] 2.13.3.0 11959 31238 370592 153354 2 356 17207244 32935936 47262 16776704 0 163183041 99.511 204840820 34540 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 03:15:42] CVMFS is ok
[2025-11-27 03:15:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 03:15:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 03:15:42] Further information can be found at the LHC@home message board.
[2025-11-27 03:15:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 03:15:42] Checking for apptainer binary...
[2025-11-27 03:15:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 03:15:42] Running /usr/bin/apptainer --version
[2025-11-27 03:15:42] apptainer version 1.4.4-1.el9
[2025-11-27 03:15:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 03:15:43] c6-12-27-3.aglt2.org
[2025-11-27 03:15:43] apptainer works
[2025-11-27 03:15:43] Set ATHENA_PROC_NUMBER=10
[2025-11-27 03:15:43] Set ATHENA_CORE_NUMBER=10
[2025-11-27 03:15:43] Starting ATLAS job with PandaID=6897531522
[2025-11-27 03:15:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 22:32:59]  *** The last 200 lines of the pilot log: ***
[2025-11-27 22:33:00] 2025-11-28 03:31:38,638 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:33:00] 2025-11-28 03:31:39,646 | INFO     | time since job start (69301s) is within the limit (172800.0s)
[2025-11-27 22:33:00] 2025-11-28 03:31:41,147 | INFO     | monitor loop #3656: job 0:6897531522 is in state 'finished'
[2025-11-27 22:33:00] 2025-11-28 03:31:41,147 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:33:00] 2025-11-28 03:31:41,662 | INFO     | time since job start (69303s) is within the limit (172800.0s)
[2025-11-27 22:33:00] 2025-11-28 03:31:43,663 | INFO     | monitor loop #3657: job 0:6897531522 is in state 'finished'
[2025-11-27 22:33:00] 2025-11-28 03:31:43,663 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:33:00] 2025-11-28 03:31:43,677 | INFO     | time since job start (69305s) is within the limit (172800.0s)
[2025-11-27 22:33:00] 2025-11-28 03:31:45,684 | INFO     | time since job start (69307s) is within the limit (172800.0s)
[2025-11-27 22:33:00] 2025-11-28 03:31:46,022 [wrapper] supervise_pilot (15 min periods counter: 78)
[2025-11-27 22:33:00] 2025-11-28 03:31:46,174 | INFO     | monitor loop #3658: job 0:6897531522 is in state 'finished'
[2025-11-27 22:33:00] 2025-11-28 03:31:46,174 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:33:00] 2025-11-28 03:31:47,715 | INFO     | time since job start (69309s) is within the limit (172800.0s)
[2025-11-27 22:33:00] 2025-11-28 03:31:48,689 | INFO     | monitor loop #3659: job 0:6897531522 is in state 'finished'
[2025-11-27 22:33:00] 2025-11-28 03:31:48,689 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:33:00] 2025-11-28 03:31:48,807 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 22:33:00] 2025-11-28 03:31:48,896 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2641.828291666667
[2025-11-27 22:33:00] 2025-11-28 03:31:49,002 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6897531522/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 22:33:00] 2025-11-28 03:31:49,003 | INFO     | extracted standard info from prmon json
[2025-11-27 22:33:00] 2025-11-28 03:31:49,003 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 22:33:00] 2025-11-28 03:31:49,004 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 22:33:00] 2025-11-28 03:31:49,135 | INFO     | fitting pss+swap vs Time
[2025-11-27 22:33:00] 2025-11-28 03:31:49,164 | INFO     | sum of square deviations: 452217622100.7088
[2025-11-27 22:33:00] 2025-11-28 03:31:49,235 | INFO     | sum of deviations: 936465169792.7266
[2025-11-27 22:33:00] 2025-11-28 03:31:49,235 | INFO     | mean x: 1764266087.526455
[2025-11-27 22:33:00] 2025-11-28 03:31:49,235 | INFO     | mean y: 3137377.092592593
[2025-11-27 22:33:00] 2025-11-28 03:31:49,236 | INFO     | intersect: -3650355234.584252
[2025-11-27 22:33:00] 2025-11-28 03:31:49,261 | INFO     | chi2: 23.614721251909522
[2025-11-27 22:33:00] 2025-11-28 03:31:49,262 | INFO     | sum of square deviations: 446264393006.322
[2025-11-27 22:33:00] 2025-11-28 03:31:49,337 | INFO     | sum of deviations: 1369816567662.3691
[2025-11-27 22:33:00] 2025-11-28 03:31:49,338 | INFO     | mean x: 1764265935.0487156
[2025-11-27 22:33:00] 2025-11-28 03:31:49,338 | INFO     | mean y: 3148473.1204605848
[2025-11-27 22:33:00] 2025-11-28 03:31:49,338 | INFO     | intersect: -5412297494.485194
[2025-11-27 22:33:00] 2025-11-28 03:31:49,339 | INFO     | chi2: 19.911227635090185
[2025-11-27 22:33:00] 2025-11-28 03:31:49,339 | INFO     | current chi2=19.911227635090185 (change=15.682986800108287 %)
[2025-11-27 22:33:00] 2025-11-28 03:31:49,339 | INFO     | right removable region: 1128
[2025-11-27 22:33:00] 2025-11-28 03:31:49,367 | INFO     | sum of square deviations: 446260916006.32196
[2025-11-27 22:33:00] 2025-11-28 03:31:49,502 | INFO     | sum of deviations: 465404427915.6759
[2025-11-27 22:33:00] 2025-11-28 03:31:49,502 | INFO     | mean x: 1764266240.0487156
[2025-11-27 22:33:00] 2025-11-28 03:31:49,502 | INFO     | mean y: 3149435.9512843224
[2025-11-27 22:33:00] 2025-11-28 03:31:49,502 | INFO     | intersect: -1836799550.5944722
[2025-11-27 22:33:00] 2025-11-28 03:31:49,514 | INFO     | chi2: 19.99315663089593
[2025-11-27 22:33:00] 2025-11-28 03:31:49,514 | INFO     | current chi2=19.99315663089593 (change=15.336046453314575 %)
[2025-11-27 22:33:00] 2025-11-28 03:31:49,514 | INFO     | left removable region: 10
[2025-11-27 22:33:00] 2025-11-28 03:31:49,516 | INFO     | sum of square deviations: 433345467796.3756
[2025-11-27 22:33:00] 2025-11-28 03:31:49,634 | INFO     | sum of deviations: 785644818742.5537
[2025-11-27 22:33:00] 2025-11-28 03:31:49,634 | INFO     | mean x: 1764266209.59034
[2025-11-27 22:33:00] 2025-11-28 03:31:49,634 | INFO     | mean y: 3167611.8658318426
[2025-11-27 22:33:00] 2025-11-28 03:31:49,634 | INFO     | intersect: -3195404219.277726
[2025-11-27 22:33:00] 2025-11-28 03:31:49,650 | INFO     | chi2: 14.996540646853237
[2025-11-27 22:33:00] 2025-11-28 03:31:49,650 | INFO     | current memory leak: 1.81 B/s (using 1118 data points, chi2=15.00)
[2025-11-27 22:33:00] 2025-11-28 03:31:49,664 | INFO     | could have reported an average CPU frequency of 2706 MHz (41 samples)
[2025-11-27 22:33:00] 2025-11-28 03:31:49,665 | INFO     | ..............................
[2025-11-27 22:33:00] 2025-11-28 03:31:49,665 | INFO     | . Timing measurements:
[2025-11-27 22:33:00] 2025-11-28 03:31:49,665 | INFO     | . get job = 0 s
[2025-11-27 22:33:00] 2025-11-28 03:31:49,665 | INFO     | . initial setup = 3 s
[2025-11-27 22:33:00] 2025-11-28 03:31:49,665 | INFO     | . payload setup = 37 s
[2025-11-27 22:33:00] 2025-11-28 03:31:49,665 | INFO     | . stage-in = 0 s
[2025-11-27 22:33:00] 2025-11-28 03:31:49,665 | INFO     | . payload execution = 69144 s
[2025-11-27 22:33:00] 2025-11-28 03:31:49,665 | INFO     | . stage-out = 17 s
[2025-11-27 22:33:00] 2025-11-28 03:31:49,665 | INFO     | . log creation = 3 s
[2025-11-27 22:33:00] 2025-11-28 03:31:49,665 | INFO     | ..............................
[2025-11-27 22:33:00] 2025-11-28 03:31:49,773 | INFO     | time since job start (69311s) is within the limit (172800.0s)
[2025-11-27 22:33:00] 2025-11-28 03:31:49,773 | INFO     | 69315s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-27 22:33:00] 2025-11-28 03:31:50,255 | INFO     | 
[2025-11-27 22:33:00] 2025-11-28 03:31:50,255 | INFO     | job summary report
[2025-11-27 22:33:00] 2025-11-28 03:31:50,255 | INFO     | --------------------------------------------------
[2025-11-27 22:33:00] 2025-11-28 03:31:50,255 | INFO     | PanDA job id: 6897531522
[2025-11-27 22:33:00] 2025-11-28 03:31:50,255 | INFO     | task id: 47556161
[2025-11-27 22:33:00] 2025-11-28 03:31:50,255 | INFO     | errors: (none)
[2025-11-27 22:33:00] 2025-11-28 03:31:50,255 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 22:33:00] 2025-11-28 03:31:50,256 | INFO     | pilot state: finished 
[2025-11-27 22:33:00] 2025-11-28 03:31:50,256 | INFO     | transexitcode: 0
[2025-11-27 22:33:00] 2025-11-28 03:31:50,256 | INFO     | exeerrorcode: 0
[2025-11-27 22:33:00] 2025-11-28 03:31:50,256 | INFO     | exeerrordiag: 
[2025-11-27 22:33:00] 2025-11-28 03:31:50,256 | INFO     | exitcode: 0
[2025-11-27 22:33:00] 2025-11-28 03:31:50,256 | INFO     | exitmsg: OK
[2025-11-27 22:33:00] 2025-11-28 03:31:50,256 | INFO     | cpuconsumptiontime: 256515 s
[2025-11-27 22:33:00] 2025-11-28 03:31:50,256 | INFO     | nevents: 1000
[2025-11-27 22:33:00] 2025-11-28 03:31:50,256 | INFO     | neventsw: 0
[2025-11-27 22:33:00] 2025-11-28 03:31:50,256 | INFO     | pid: 697591
[2025-11-27 22:33:00] 2025-11-28 03:31:50,256 | INFO     | pgrp: 697591
[2025-11-27 22:33:00] 2025-11-28 03:31:50,256 | INFO     | corecount: 10
[2025-11-27 22:33:00] 2025-11-28 03:31:50,256 | INFO     | event service: False
[2025-11-27 22:33:00] 2025-11-28 03:31:50,256 | INFO     | sizes: {0: 2284094, 1: 2284293, 12: 2284293, 23: 2284321, 26: 2284611, 34: 2284639, 69189: 2340461, 69190: 2340460, 69209: 2349510, 69211: 2349566, 69250: 2349908}
[2025-11-27 22:33:00] 2025-11-28 03:31:50,257 | INFO     | --------------------------------------------------
[2025-11-27 22:33:00] 2025-11-28 03:31:50,257 | INFO     | 
[2025-11-27 22:33:00] 2025-11-28 03:31:50,257 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-27 22:33:00] 2025-11-28 03:31:50,456 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 22:33:00] 2025-11-28 03:31:50,457 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 22:33:00] 2025-11-28 03:31:50,457 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 22:33:00] 2025-11-28 03:31:50,457 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 22:33:00] 2025-11-28 03:31:50,457 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 22:33:00] 2025-11-28 03:31:50,457 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 22:33:00] 2025-11-28 03:31:50,457 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 22:33:00] 2025-11-28 03:31:50,457 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 22:33:00] 2025-11-28 03:31:50,457 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 22:33:00] 2025-11-28 03:31:50,457 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 22:33:00] 2025-11-28 03:31:50,457 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 22:33:00] 2025-11-28 03:31:50,457 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 22:33:00] 2025-11-28 03:31:50,457 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 22:33:00] 2025-11-28 03:31:50,458 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 22:33:00] 2025-11-28 03:31:50,474 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 22:33:00] 2025-11-28 03:31:50,474 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 22:33:00] 2025-11-28 03:31:50,474 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 22:33:00] 2025-11-28 03:31:50,474 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 22:33:00] 2025-11-28 03:31:50,474 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 22:33:00] 2025-11-28 03:31:50,474 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 22:33:00] 2025-11-28 03:31:50,475 | INFO     | job 6897531522 has completed (purged errors)
[2025-11-27 22:33:00] 2025-11-28 03:31:50,475 | INFO     | overall cleanup function is called
[2025-11-27 22:33:00] 2025-11-28 03:31:51,582 | INFO     | --- collectZombieJob: --- 10, [697591]
[2025-11-27 22:33:00] 2025-11-28 03:31:51,582 | INFO     | zombie collector waiting for pid 697591
[2025-11-27 22:33:00] 2025-11-28 03:31:51,582 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 22:33:00] 2025-11-28 03:31:51,582 | INFO     | collected zombie processes
[2025-11-27 22:33:00] 2025-11-28 03:31:51,582 | INFO     | will attempt to kill all subprocesses of pid=697591
[2025-11-27 22:33:00] 2025-11-28 03:31:52,968 | INFO     | process IDs to be killed: [697591] (in reverse order)
[2025-11-27 22:33:00] 2025-11-28 03:31:53,279 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 22:33:00] 2025-11-28 03:31:53,279 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 22:33:00] 2025-11-28 03:31:53,402 | INFO     | did not find any defunct processes belonging to 697591
[2025-11-27 22:33:00] 2025-11-28 03:31:53,594 | INFO     | did not find any defunct processes belonging to 697591
[2025-11-27 22:33:00] 2025-11-28 03:31:53,602 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 22:33:00] 2025-11-28 03:31:53,602 | INFO     | ready for new job
[2025-11-27 22:33:00] 2025-11-28 03:31:53,602 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 22:33:00] 2025-11-28 03:31:53,621 | INFO     | ***************************************
[2025-11-27 22:33:00] 2025-11-28 03:31:53,621 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 22:33:00] 2025-11-28 03:31:53,621 | INFO     | ***************************************
[2025-11-27 22:33:00] 2025-11-28 03:31:53,621 | INFO     | 
[2025-11-27 22:33:00] 2025-11-28 03:31:53,655 | INFO     | architecture information:
[2025-11-27 22:33:00] 2025-11-28 03:31:53,659 | INFO     | executing command: cat /etc/os-release
[2025-11-27 22:33:00] 2025-11-28 03:31:53,787 | INFO     | cat /etc/os-release:
[2025-11-27 22:33:00] NAME="CentOS Linux"
[2025-11-27 22:33:00] VERSION="7 (Core)"
[2025-11-27 22:33:00] ID="centos"
[2025-11-27 22:33:00] ID_LIKE="rhel fedora"
[2025-11-27 22:33:00] VERSION_ID="7"
[2025-11-27 22:33:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 22:33:00] ANSI_COLOR="0;31"
[2025-11-27 22:33:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 22:33:00] HOME_URL="https://www.centos.org/"
[2025-11-27 22:33:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 22:33:00] 
[2025-11-27 22:33:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 22:33:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 22:33:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 22:33:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 22:33:00] 
[2025-11-27 22:33:00] 2025-11-28 03:31:53,787 | INFO     | ***************************************
[2025-11-27 22:33:00] 2025-11-28 03:31:54,293 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-27 22:33:00] 2025-11-28 03:31:54,407 | INFO     | sufficient remaining disk space (85533392896 B)
[2025-11-27 22:33:00] 2025-11-28 03:31:54,408 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 22:33:00] 2025-11-28 03:31:54,408 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 22:33:00] 2025-11-28 03:31:54,408 | INFO     | update_server=False
[2025-11-27 22:33:00] 2025-11-28 03:31:54,408 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 22:33:00] 2025-11-28 03:31:54,416 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 22:33:00] 2025-11-28 03:31:54,463 | INFO     | all data control threads have been joined
[2025-11-27 22:33:00] 2025-11-28 03:31:54,749 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 22:33:00] 2025-11-28 03:31:54,749 | INFO     | aborting loop
[2025-11-27 22:33:00] 2025-11-28 03:31:55,064 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 22:33:00] 2025-11-28 03:31:55,193 | INFO     | all job control threads have been joined
[2025-11-27 22:33:00] 2025-11-28 03:31:55,290 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 22:33:00] 2025-11-28 03:31:55,337 | INFO     | all payload control threads have been joined
[2025-11-27 22:33:00] 2025-11-28 03:31:55,413 | INFO     | [job] retrieve thread has finished
[2025-11-27 22:33:00] 2025-11-28 03:31:55,520 | INFO     | [data] control thread has finished
[2025-11-27 22:33:00] 2025-11-28 03:31:55,771 | INFO     | [job] validate thread has finished
[2025-11-27 22:33:00] 2025-11-28 03:31:55,771 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 22:33:00] 2025-11-28 03:31:55,772 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 22:33:00] 2025-11-28 03:31:55,772 | INFO     | [job] job monitor thread has finished
[2025-11-27 22:33:00] 2025-11-28 03:31:55,870 | INFO     | [payload] failed_post thread has finished
[2025-11-27 22:33:00] 2025-11-28 03:31:56,070 | INFO     | [job] queue monitor thread has finished
[2025-11-27 22:33:00] 2025-11-28 03:31:56,205 | INFO     | [job] control thread has finished
[2025-11-27 22:33:00] 2025-11-28 03:31:56,343 | INFO     | [payload] control thread has finished
[2025-11-27 22:33:00] 2025-11-28 03:31:56,368 | INFO     | [payload] validate_post thread has finished
[2025-11-27 22:33:00] 2025-11-28 03:31:56,802 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 22:33:00] 2025-11-28 03:31:56,851 | INFO     | [data] copytool_in thread has finished
[2025-11-27 22:33:00] 2025-11-28 03:31:56,869 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 22:33:00] 2025-11-28 03:31:57,324 | INFO     | [data] copytool_out thread has finished
[2025-11-27 22:33:00] 2025-11-28 03:31:58,459 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 22:33:00] 2025-11-28 03:32:26,769 | INFO     | PID=671756 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 22:33:00] 2025-11-28 03:32:26,769 | INFO     | .. there are 68 such processes running
[2025-11-27 22:33:00] 2025-11-28 03:32:26,769 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 22:33:00] 2025-11-28 03:32:26,770 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 22:33:00] 2025-11-28 03:32:26,770 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 22:33:00] 2025-11-28 03:32:47,279 | INFO     | [monitor] cgroup control has ended
[2025-11-27 22:33:00] 2025-11-28 03:32:48,463 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140023842133824)>', '<ExcThread(monitor, started 140023340967680)>']
[2025-11-27 22:33:00] 2025-11-28 03:32:48,947 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 22:33:00] 2025-11-28 03:32:48,947 | INFO     | [monitor] control thread has ended
[2025-11-27 22:33:00] 2025-11-28 03:32:53,504 | INFO     | all workflow threads have been joined
[2025-11-27 22:33:00] 2025-11-28 03:32:53,504 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 22:33:00] 2025-11-28 03:32:53,504 | INFO     | traces error code: 0
[2025-11-27 22:33:00] 2025-11-28 03:32:53,504 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 22:33:00] 2025-11-28 03:32:57,720 [wrapper] ==== pilot stdout END ====
[2025-11-27 22:33:00] 2025-11-28 03:32:57,767 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 22:33:00] 2025-11-28 03:32:57,848 [wrapper] pilotpid: 671756
[2025-11-27 22:33:00] 2025-11-28 03:32:57,940 [wrapper] Pilot exit status: 0
[2025-11-27 22:33:00] 2025-11-28 03:32:58,012 [wrapper] pandaids: 6897531522
[2025-11-27 22:33:00] 2025-11-28 03:32:59,147 [wrapper] cleanup supervisor_pilot 1494209 671757
[2025-11-27 22:33:00] 2025-11-28 03:32:59,172 [wrapper] Test setup, not cleaning
[2025-11-27 22:33:00] 2025-11-28 03:32:59,186 [wrapper] apfmon messages muted
[2025-11-27 22:33:00] 2025-11-28 03:32:59,218 [wrapper] ==== wrapper stdout END ====
[2025-11-27 22:33:00] 2025-11-28 03:32:59,233 [wrapper] ==== wrapper stderr END ====
[2025-11-27 22:33:00]  *** Error codes and diagnostics ***
[2025-11-27 22:33:00]     "exeErrorCode": 0,
[2025-11-27 22:33:00]     "exeErrorDiag": "",
[2025-11-27 22:33:00]     "pilotErrorCode": 0,
[2025-11-27 22:33:00]     "pilotErrorDiag": "",
[2025-11-27 22:33:00]  *** Listing of results directory ***
[2025-11-27 22:33:00] total 1316168
[2025-11-27 22:33:00] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-27 22:33:00] -rwx------. 1 boincer umatlas     36292 Nov 25 12:01 runpilot2-wrapper.sh
[2025-11-27 22:33:00] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 12:02 queuedata.json
[2025-11-27 22:33:00] -rw-r--r--. 1 boincer umatlas       100 Nov 27 03:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 22:33:00] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 03:15 run_atlas
[2025-11-27 22:33:00] -rw-r--r--. 1 boincer umatlas       105 Nov 27 03:15 job.xml
[2025-11-27 22:33:00] -rw-r--r--. 2 boincer umatlas 407938205 Nov 27 03:15 EVNT.47483658._002300.pool.root.1
[2025-11-27 22:33:00] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 03:15 start_atlas.sh
[2025-11-27 22:33:00] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 03:15 shared
[2025-11-27 22:33:00] -rw-r--r--. 2 boincer umatlas    590104 Nov 27 03:15 input.tar.gz
[2025-11-27 22:33:00] -rw-r--r--. 1 boincer umatlas         0 Nov 27 03:15 boinc_lockfile
[2025-11-27 22:33:00] -rw-r--r--. 1 boincer umatlas      2786 Nov 27 03:15 pandaJob.out
[2025-11-27 22:33:00] -rw-------. 1 boincer umatlas        57 Nov 27 03:15 setup.sh.local
[2025-11-27 22:33:00] -rw-------. 1 boincer umatlas    991570 Nov 27 03:16 agis_schedconf.cvmfs.json
[2025-11-27 22:33:00] drwx------. 5 boincer umatlas      4096 Nov 27 03:16 pilot3
[2025-11-27 22:33:00] -rw-r--r--. 1 boincer umatlas       533 Nov 27 21:51 boinc_task_state.xml
[2025-11-27 22:33:00] -rw-------. 1 boincer umatlas 914943657 Nov 27 22:29 HITS.47556161._002835.pool.root.1
[2025-11-27 22:33:00] -rw-r--r--. 1 boincer umatlas      6879 Nov 27 22:30 init_data.xml
[2025-11-27 22:33:00] -rw-------. 1 boincer umatlas      1059 Nov 27 22:30 memory_monitor_summary.json
[2025-11-27 22:33:00] -rw-------. 1 boincer umatlas   1516240 Nov 27 22:31 agis_ddmendpoints.agis.ALL.json
[2025-11-27 22:33:00] -rw-------. 1 boincer umatlas   2407449 Nov 27 22:31 log.47556161._002835.job.log.tgz.1
[2025-11-27 22:33:00] -rw-------. 1 boincer umatlas        95 Nov 27 22:31 pilot_heartbeat.json
[2025-11-27 22:33:00] -rw-------. 1 boincer umatlas      8630 Nov 27 22:31 heartbeat.json
[2025-11-27 22:33:00] -rw-------. 1 boincer umatlas      4823 Nov 27 22:32 pilotlog.txt
[2025-11-27 22:33:00] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 22:32 boinc_mmap_file
[2025-11-27 22:33:00] -rw-r--r--. 1 boincer umatlas        29 Nov 27 22:32 wrapper_checkpoint.txt
[2025-11-27 22:33:00] -rw-------. 1 boincer umatlas   8070126 Nov 27 22:32 log.47556161._002835.job.log.1
[2025-11-27 22:33:00] -rw-------. 1 boincer umatlas       353 Nov 27 22:32 output.list
[2025-11-27 22:33:00] -rw-r--r--. 1 boincer umatlas       620 Nov 27 22:32 runtime_log
[2025-11-27 22:33:00] -rw-------. 1 boincer umatlas  10496000 Nov 27 22:32 result.tar.gz
[2025-11-27 22:33:00] -rw-------. 1 boincer umatlas       662 Nov 27 22:32 XuJNDmJbBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmhhJKDm4z7yPn.diag
[2025-11-27 22:33:00] -rw-r--r--. 1 boincer umatlas      9355 Nov 27 22:32 runtime_log.err
[2025-11-27 22:33:00] -rw-r--r--. 1 boincer umatlas     21813 Nov 27 22:33 stderr.txt
[2025-11-27 22:33:00] HITS file was successfully produced:
[2025-11-27 22:33:00] -rw-------. 1 boincer umatlas 914943657 Nov 27 22:29 shared/HITS.pool.root.1
[2025-11-27 22:33:00]  *** Contents of shared directory: ***
[2025-11-27 22:33:00] total 1302732
[2025-11-27 22:33:00] -rw-r--r--. 2 boincer umatlas 407938205 Nov 27 03:15 ATLAS.root_0
[2025-11-27 22:33:00] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 03:15 start_atlas.sh
[2025-11-27 22:33:00] -rw-r--r--. 2 boincer umatlas    590104 Nov 27 03:15 input.tar.gz
[2025-11-27 22:33:00] -rw-------. 1 boincer umatlas 914943657 Nov 27 22:29 HITS.pool.root.1
[2025-11-27 22:33:00] -rw-------. 1 boincer umatlas  10496000 Nov 27 22:32 result.tar.gz
22:33:02 (661396): run_atlas exited; CPU time 259257.232285
22:33:02 (661396): called boinc_finish(0)

</stderr_txt>
]]>

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