Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
04:43:27 (2729734): wrapper (7.7.26015): starting
04:43:27 (2729734): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 04:43:27] Arguments: --nthreads 8
[2025-11-27 04:43:27] Threads: 8
[2025-11-27 04:43:27] Checking for CVMFS
[2025-11-27 04:43:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 04:43:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 04:43:28] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 04:43:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 04:43:28] 2.13.3.0 12846 31278 254404 153358 2 553 18817566 32935937 42248 16776704 0 169761310 99.506 210031416 38069 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 04:43:28] CVMFS is ok
[2025-11-27 04:43:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 04:43:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 04:43:28] Further information can be found at the LHC@home message board.
[2025-11-27 04:43:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 04:43:28] Checking for apptainer binary...
[2025-11-27 04:43:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 04:43:28] Running /usr/bin/apptainer --version
[2025-11-27 04:43:28] apptainer version 1.4.4-1.el9
[2025-11-27 04:43:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 04:43:29] c7-16-9.aglt2.org
[2025-11-27 04:43:29] apptainer works
[2025-11-27 04:43:29] Set ATHENA_PROC_NUMBER=8
[2025-11-27 04:43:29] Set ATHENA_CORE_NUMBER=8
[2025-11-27 04:43:29] Starting ATLAS job with PandaID=6898214366
[2025-11-27 04:43:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 17:17:20]  *** The last 200 lines of the pilot log: ***
[2025-11-27 17:17:20] 2025-11-27 22:16:22,291 | INFO     | sum of square deviations: 125658244269.45418
[2025-11-27 17:17:20] 2025-11-27 22:16:22,290 | INFO     | pfn file=/tmp/boinchome/slots/4/PanDA_Pilot-6898214366/HITS.47556161._004804.pool.root.1 does not exist (skip from workdir size calculation)
[2025-11-27 17:17:20] 2025-11-27 22:16:22,300 | INFO     | total size of present files: 0 B (workdir size: 8491620 B)
[2025-11-27 17:17:20] 2025-11-27 22:16:22,300 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/4/PanDA_Pilot-6898214366/HITS.47556161._004804.pool.root.1 since it does not exist
[2025-11-27 17:17:20] 2025-11-27 22:16:22,305 | INFO     | sum of deviations: 928338164148.5625
[2025-11-27 17:17:20] 2025-11-27 22:16:22,305 | INFO     | mean x: 1764259216.0783784
[2025-11-27 17:17:20] 2025-11-27 22:16:22,305 | INFO     | mean y: 2840334.8351351353
[2025-11-27 17:17:20] 2025-11-27 22:16:22,306 | INFO     | intersect: -13031156529.105755
[2025-11-27 17:17:20] 2025-11-27 22:16:22,307 | INFO     | chi2: 5.436597386230473
[2025-11-27 17:17:20] 2025-11-27 22:16:22,308 | INFO     | sum of square deviations: 123128974090.98784
[2025-11-27 17:17:20] 2025-11-27 22:16:22,350 | INFO     | sum of deviations: 1144423405618.8706
[2025-11-27 17:17:20] 2025-11-27 22:16:22,350 | INFO     | mean x: 1764259063.5959184
[2025-11-27 17:17:20] 2025-11-27 22:16:22,350 | INFO     | mean y: 2853351.023129252
[2025-11-27 17:17:20] 2025-11-27 22:16:22,350 | INFO     | intersect: -16395069078.36696
[2025-11-27 17:17:20] 2025-11-27 22:16:22,351 | INFO     | chi2: 2.861691466475457
[2025-11-27 17:17:20] 2025-11-27 22:16:22,351 | INFO     | current chi2=2.861691466475457 (change=47.36245369717099 %)
[2025-11-27 17:17:20] 2025-11-27 22:16:22,352 | INFO     | sum of square deviations: 120633890599.56291
[2025-11-27 17:17:20] 2025-11-27 22:16:22,367 | INFO     | sum of deviations: 1210684253050.6648
[2025-11-27 17:17:20] 2025-11-27 22:16:22,367 | INFO     | mean x: 1764258911.1136987
[2025-11-27 17:17:20] 2025-11-27 22:16:22,367 | INFO     | mean y: 2857388.883561644
[2025-11-27 17:17:20] 2025-11-27 22:16:22,367 | INFO     | intersect: -17703282000.086845
[2025-11-27 17:17:20] 2025-11-27 22:16:22,368 | INFO     | chi2: 2.4156031625728103
[2025-11-27 17:17:20] 2025-11-27 22:16:22,368 | INFO     | current chi2=2.4156031625728103 (change=15.588273897746987 %)
[2025-11-27 17:17:20] 2025-11-27 22:16:22,368 | INFO     | right removable region: 729
[2025-11-27 17:17:20] 2025-11-27 22:16:22,369 | INFO     | sum of square deviations: 123127855111.17856
[2025-11-27 17:17:20] 2025-11-27 22:16:22,384 | INFO     | sum of deviations: 725174061972.8737
[2025-11-27 17:17:20] 2025-11-27 22:16:22,384 | INFO     | mean x: 1764259368.5945578
[2025-11-27 17:17:20] 2025-11-27 22:16:22,384 | INFO     | mean y: 2852560.318367347
[2025-11-27 17:17:20] 2025-11-27 22:16:22,384 | INFO     | intersect: -10387932949.119608
[2025-11-27 17:17:20] 2025-11-27 22:16:22,385 | INFO     | chi2: 3.1229146939275303
[2025-11-27 17:17:20] 2025-11-27 22:16:22,385 | INFO     | current chi2=3.1229146939275303 (change=42.55755076075555 %)
[2025-11-27 17:17:20] 2025-11-27 22:16:22,386 | INFO     | sum of square deviations: 120631921915.29466
[2025-11-27 17:17:20] 2025-11-27 22:16:22,407 | INFO     | sum of deviations: 687901944859.6636
[2025-11-27 17:17:20] 2025-11-27 22:16:22,407 | INFO     | mean x: 1764259521.1027398
[2025-11-27 17:17:20] 2025-11-27 22:16:22,407 | INFO     | mean y: 2854836.817808219
[2025-11-27 17:17:20] 2025-11-27 22:16:22,407 | INFO     | intersect: -10057811830.301577
[2025-11-27 17:17:20] 2025-11-27 22:16:22,408 | INFO     | chi2: 3.100207516532253
[2025-11-27 17:17:20] 2025-11-27 22:16:22,408 | INFO     | current chi2=3.100207516532253 (change=0.7271148789120304 %)
[2025-11-27 17:17:20] 2025-11-27 22:16:22,408 | INFO     | left removable region: 20
[2025-11-27 17:17:20] 2025-11-27 22:16:22,409 | INFO     | sum of square deviations: 110518884293.39897
[2025-11-27 17:17:20] 2025-11-27 22:16:22,430 | INFO     | sum of deviations: 919531285085.6893
[2025-11-27 17:17:20] 2025-11-27 22:16:22,430 | INFO     | mean x: 1764259490.6586742
[2025-11-27 17:17:20] 2025-11-27 22:16:22,430 | INFO     | mean y: 2875131.944992948
[2025-11-27 17:17:20] 2025-11-27 22:16:22,430 | INFO     | intersect: -14675989996.327843
[2025-11-27 17:17:20] 2025-11-27 22:16:22,431 | INFO     | chi2: 0.05355412579059377
[2025-11-27 17:17:20] 2025-11-27 22:16:22,431 | INFO     | current memory leak: 8.32 B/s (using 709 data points, chi2=0.05)
[2025-11-27 17:17:20] 2025-11-27 22:16:22,437 | INFO     | could have reported an average CPU frequency of 3081 MHz (28 samples)
[2025-11-27 17:17:20] 2025-11-27 22:16:22,437 | INFO     | ..............................
[2025-11-27 17:17:20] 2025-11-27 22:16:22,438 | INFO     | . Timing measurements:
[2025-11-27 17:17:20] 2025-11-27 22:16:22,438 | INFO     | . get job = 0 s
[2025-11-27 17:17:20] 2025-11-27 22:16:22,438 | INFO     | . initial setup = 3 s
[2025-11-27 17:17:20] 2025-11-27 22:16:22,438 | INFO     | . payload setup = 11 s
[2025-11-27 17:17:20] 2025-11-27 22:16:22,438 | INFO     | . stage-in = 0 s
[2025-11-27 17:17:20] 2025-11-27 22:16:22,438 | INFO     | . payload execution = 45105 s
[2025-11-27 17:17:20] 2025-11-27 22:16:22,438 | INFO     | . stage-out = 3 s
[2025-11-27 17:17:20] 2025-11-27 22:16:22,438 | INFO     | . log creation = 0 s
[2025-11-27 17:17:20] 2025-11-27 22:16:22,438 | INFO     | ..............................
[2025-11-27 17:17:20] 2025-11-27 22:16:22,866 | INFO     | time since job start (45151s) is within the limit (172800.0s)
[2025-11-27 17:17:20] 2025-11-27 22:16:23,195 | INFO     | 
[2025-11-27 17:17:20] 2025-11-27 22:16:23,195 | INFO     | job summary report
[2025-11-27 17:17:20] 2025-11-27 22:16:23,195 | INFO     | --------------------------------------------------
[2025-11-27 17:17:20] 2025-11-27 22:16:23,195 | INFO     | PanDA job id: 6898214366
[2025-11-27 17:17:20] 2025-11-27 22:16:23,195 | INFO     | task id: 47556161
[2025-11-27 17:17:20] 2025-11-27 22:16:23,195 | INFO     | errors: (none)
[2025-11-27 17:17:20] 2025-11-27 22:16:23,195 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 17:17:20] 2025-11-27 22:16:23,195 | INFO     | pilot state: finished 
[2025-11-27 17:17:20] 2025-11-27 22:16:23,195 | INFO     | transexitcode: 0
[2025-11-27 17:17:20] 2025-11-27 22:16:23,195 | INFO     | exeerrorcode: 0
[2025-11-27 17:17:20] 2025-11-27 22:16:23,195 | INFO     | exeerrordiag: 
[2025-11-27 17:17:20] 2025-11-27 22:16:23,195 | INFO     | exitcode: 0
[2025-11-27 17:17:20] 2025-11-27 22:16:23,195 | INFO     | exitmsg: OK
[2025-11-27 17:17:20] 2025-11-27 22:16:23,196 | INFO     | cpuconsumptiontime: 203437 s
[2025-11-27 17:17:20] 2025-11-27 22:16:23,196 | INFO     | nevents: 1000
[2025-11-27 17:17:20] 2025-11-27 22:16:23,196 | INFO     | neventsw: 0
[2025-11-27 17:17:20] 2025-11-27 22:16:23,196 | INFO     | pid: 2749691
[2025-11-27 17:17:20] 2025-11-27 22:16:23,196 | INFO     | pgrp: 2749691
[2025-11-27 17:17:20] 2025-11-27 22:16:23,196 | INFO     | corecount: 8
[2025-11-27 17:17:20] 2025-11-27 22:16:23,196 | INFO     | event service: False
[2025-11-27 17:17:20] 2025-11-27 22:16:23,196 | INFO     | sizes: {0: 2284264, 9: 2284526, 11: 2284554, 45118: 2330125, 45122: 2339119, 45123: 2339175, 45131: 2339577}
[2025-11-27 17:17:20] 2025-11-27 22:16:23,196 | INFO     | --------------------------------------------------
[2025-11-27 17:17:20] 2025-11-27 22:16:23,196 | INFO     | 
[2025-11-27 17:17:20] 2025-11-27 22:16:23,196 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-27 17:17:20] 2025-11-27 22:16:23,291 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 17:17:20] 2025-11-27 22:16:23,291 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 17:17:20] 2025-11-27 22:16:23,291 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 17:17:20] 2025-11-27 22:16:23,291 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 17:17:20] 2025-11-27 22:16:23,291 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 17:17:20] 2025-11-27 22:16:23,291 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 17:17:20] 2025-11-27 22:16:23,291 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 17:17:20] 2025-11-27 22:16:23,292 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 17:17:20] 2025-11-27 22:16:23,292 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 17:17:20] 2025-11-27 22:16:23,292 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 17:17:20] 2025-11-27 22:16:23,292 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 17:17:20] 2025-11-27 22:16:23,292 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 17:17:20] 2025-11-27 22:16:23,292 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 17:17:20] 2025-11-27 22:16:23,292 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 17:17:20] 2025-11-27 22:16:23,292 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 17:17:20] 2025-11-27 22:16:23,292 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 17:17:20] 2025-11-27 22:16:23,292 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 17:17:20] 2025-11-27 22:16:23,292 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 17:17:20] 2025-11-27 22:16:23,292 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 17:17:20] 2025-11-27 22:16:23,292 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 17:17:20] 2025-11-27 22:16:23,292 | INFO     | job 6898214366 has completed (purged errors)
[2025-11-27 17:17:20] 2025-11-27 22:16:23,292 | INFO     | overall cleanup function is called
[2025-11-27 17:17:20] 2025-11-27 22:16:23,447 | INFO     | number of running child processes to parent process 2749691: 1
[2025-11-27 17:17:20] 2025-11-27 22:16:23,450 | INFO     | maximum number of monitored processes: 16
[2025-11-27 17:17:20] 2025-11-27 22:16:23,450 | INFO     | aborting job monitoring since job object (job id=6898214366) has expired
[2025-11-27 17:17:20] 2025-11-27 22:16:24,324 | INFO     | --- collectZombieJob: --- 10, [2749691]
[2025-11-27 17:17:20] 2025-11-27 22:16:24,324 | INFO     | zombie collector waiting for pid 2749691
[2025-11-27 17:17:20] 2025-11-27 22:16:24,325 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 17:17:20] 2025-11-27 22:16:24,325 | INFO     | collected zombie processes
[2025-11-27 17:17:20] 2025-11-27 22:16:24,325 | INFO     | will attempt to kill all subprocesses of pid=2749691
[2025-11-27 17:17:20] 2025-11-27 22:16:25,081 | INFO     | process IDs to be killed: [2749691] (in reverse order)
[2025-11-27 17:17:20] 2025-11-27 22:16:25,304 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 17:17:20] 2025-11-27 22:16:25,305 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 17:17:20] 2025-11-27 22:16:25,332 | INFO     | did not find any defunct processes belonging to 2749691
[2025-11-27 17:17:20] 2025-11-27 22:16:25,359 | INFO     | did not find any defunct processes belonging to 2749691
[2025-11-27 17:17:20] 2025-11-27 22:16:25,360 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 17:17:20] 2025-11-27 22:16:25,360 | INFO     | ready for new job
[2025-11-27 17:17:20] 2025-11-27 22:16:25,361 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 17:17:20] 2025-11-27 22:16:25,365 | INFO     | ***************************************
[2025-11-27 17:17:20] 2025-11-27 22:16:25,365 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 17:17:20] 2025-11-27 22:16:25,365 | INFO     | ***************************************
[2025-11-27 17:17:20] 2025-11-27 22:16:25,365 | INFO     | 
[2025-11-27 17:17:20] 2025-11-27 22:16:25,370 | INFO     | architecture information:
[2025-11-27 17:17:20] 2025-11-27 22:16:25,370 | INFO     | executing command: cat /etc/os-release
[2025-11-27 17:17:20] 2025-11-27 22:16:25,389 | INFO     | cat /etc/os-release:
[2025-11-27 17:17:20] NAME="CentOS Linux"
[2025-11-27 17:17:20] VERSION="7 (Core)"
[2025-11-27 17:17:20] ID="centos"
[2025-11-27 17:17:20] ID_LIKE="rhel fedora"
[2025-11-27 17:17:20] VERSION_ID="7"
[2025-11-27 17:17:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 17:17:20] ANSI_COLOR="0;31"
[2025-11-27 17:17:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 17:17:20] HOME_URL="https://www.centos.org/"
[2025-11-27 17:17:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 17:17:20] 
[2025-11-27 17:17:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 17:17:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 17:17:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 17:17:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 17:17:20] 
[2025-11-27 17:17:20] 2025-11-27 22:16:25,390 | INFO     | ***************************************
[2025-11-27 17:17:20] 2025-11-27 22:16:25,893 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-27 17:17:20] 2025-11-27 22:16:25,915 | INFO     | sufficient remaining disk space (67050143744 B)
[2025-11-27 17:17:20] 2025-11-27 22:16:25,916 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 17:17:20] 2025-11-27 22:16:25,916 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 17:17:20] 2025-11-27 22:16:25,916 | INFO     | update_server=False
[2025-11-27 17:17:20] 2025-11-27 22:16:25,916 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 17:17:20] 2025-11-27 22:16:25,916 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 17:17:20] 2025-11-27 22:16:25,956 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 17:17:20] 2025-11-27 22:16:25,956 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 17:17:20] 2025-11-27 22:16:25,956 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 17:17:20] 2025-11-27 22:16:25,956 | INFO     | will abort loop
[2025-11-27 17:17:20] 2025-11-27 22:16:26,580 | INFO     | all data control threads have been joined
[2025-11-27 17:17:20] 2025-11-27 22:16:26,774 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 17:17:20] 2025-11-27 22:16:26,792 | INFO     | all payload control threads have been joined
[2025-11-27 17:17:20] 2025-11-27 22:16:26,921 | INFO     | [job] retrieve thread has finished
[2025-11-27 17:17:20] 2025-11-27 22:16:26,962 | INFO     | [job] job monitor thread has finished
[2025-11-27 17:17:20] 2025-11-27 22:16:27,030 | INFO     | [data] copytool_in thread has finished
[2025-11-27 17:17:20] 2025-11-27 22:16:27,031 | INFO     | all job control threads have been joined
[2025-11-27 17:17:20] 2025-11-27 22:16:27,327 | INFO     | [payload] validate_post thread has finished
[2025-11-27 17:17:20] 2025-11-27 22:16:27,586 | INFO     | [data] control thread has finished
[2025-11-27 17:17:20] 2025-11-27 22:16:27,747 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 17:17:20] 2025-11-27 22:16:27,747 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 17:17:20] 2025-11-27 22:16:27,798 | INFO     | [payload] control thread has finished
[2025-11-27 17:17:20] 2025-11-27 22:16:27,886 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 17:17:20] 2025-11-27 22:16:27,936 | INFO     | [job] validate thread has finished
[2025-11-27 17:17:20] 2025-11-27 22:16:28,037 | INFO     | [job] control thread has finished
[2025-11-27 17:17:20] 2025-11-27 22:16:28,292 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 17:17:20] 2025-11-27 22:16:28,367 | INFO     | [payload] failed_post thread has finished
[2025-11-27 17:17:20] 2025-11-27 22:16:28,753 | INFO     | [job] queue monitor thread has finished
[2025-11-27 17:17:20] 2025-11-27 22:16:28,779 | INFO     | [data] copytool_out thread has finished
[2025-11-27 17:17:20] 2025-11-27 22:16:29,929 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 17:17:20] 2025-11-27 22:16:36,103 | INFO     | job.realtimelogging is not enabled
[2025-11-27 17:17:20] 2025-11-27 22:16:37,114 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 17:17:20] 2025-11-27 22:16:57,434 | INFO     | PID=2735952 has CPU usage=7.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 17:17:20] 2025-11-27 22:16:57,434 | INFO     | .. there are 51 such processes running
[2025-11-27 17:17:20] 2025-11-27 22:16:57,435 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 17:17:20] 2025-11-27 22:16:57,435 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 17:17:20] 2025-11-27 22:16:57,435 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 17:17:20] 2025-11-27 22:17:13,415 | INFO     | [monitor] cgroup control has ended
[2025-11-27 17:17:20] 2025-11-27 22:17:14,257 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140452686427968)>', '<ExcThread(monitor, started 140452049176320)>']
[2025-11-27 17:17:20] 2025-11-27 22:17:14,561 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 17:17:20] 2025-11-27 22:17:14,561 | INFO     | [monitor] control thread has ended
[2025-11-27 17:17:20] 2025-11-27 22:17:19,283 | INFO     | all workflow threads have been joined
[2025-11-27 17:17:20] 2025-11-27 22:17:19,283 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 17:17:20] 2025-11-27 22:17:19,283 | INFO     | traces error code: 0
[2025-11-27 17:17:20] 2025-11-27 22:17:19,284 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 17:17:20] 2025-11-27 22:17:19,663 [wrapper] ==== pilot stdout END ====
[2025-11-27 17:17:20] 2025-11-27 22:17:19,673 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 17:17:20] 2025-11-27 22:17:19,685 [wrapper] pilotpid: 2735952
[2025-11-27 17:17:20] 2025-11-27 22:17:19,688 [wrapper] Pilot exit status: 0
[2025-11-27 17:17:20] 2025-11-27 22:17:19,705 [wrapper] pandaids: 6898214366
[2025-11-27 17:17:20] 2025-11-27 22:17:19,860 [wrapper] cleanup supervisor_pilot 1768502 2735953
[2025-11-27 17:17:20] 2025-11-27 22:17:19,865 [wrapper] Test setup, not cleaning
[2025-11-27 17:17:20] 2025-11-27 22:17:19,870 [wrapper] apfmon messages muted
[2025-11-27 17:17:20] 2025-11-27 22:17:19,881 [wrapper] ==== wrapper stdout END ====
[2025-11-27 17:17:20] 2025-11-27 22:17:19,886 [wrapper] ==== wrapper stderr END ====
[2025-11-27 17:17:20]  *** Error codes and diagnostics ***
[2025-11-27 17:17:20]     "exeErrorCode": 0,
[2025-11-27 17:17:20]     "exeErrorDiag": "",
[2025-11-27 17:17:20]     "pilotErrorCode": 0,
[2025-11-27 17:17:20]     "pilotErrorDiag": "",
[2025-11-27 17:17:20]  *** Listing of results directory ***
[2025-11-27 17:17:20] total 1316760
[2025-11-27 17:17:20] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 22:33 pilot3.tar.gz
[2025-11-27 17:17:20] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 23:31 queuedata.json
[2025-11-27 17:17:20] -rwx------. 1 boincer umatlas     36292 Nov 25 23:31 runpilot2-wrapper.sh
[2025-11-27 17:17:20] -rw-r--r--. 1 boincer umatlas       100 Nov 27 04:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 17:17:20] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 04:43 run_atlas
[2025-11-27 17:17:20] -rw-r--r--. 1 boincer umatlas       105 Nov 27 04:43 job.xml
[2025-11-27 17:17:20] -rw-r--r--. 2 boincer umatlas 411282116 Nov 27 04:43 EVNT.47483658._002498.pool.root.1
[2025-11-27 17:17:20] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 04:43 start_atlas.sh
[2025-11-27 17:17:20] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 04:43 shared
[2025-11-27 17:17:20] -rw-r--r--. 2 boincer umatlas    590113 Nov 27 04:43 input.tar.gz
[2025-11-27 17:17:20] -rw-r--r--. 1 boincer umatlas         0 Nov 27 04:43 boinc_lockfile
[2025-11-27 17:17:20] -rw-r--r--. 1 boincer umatlas      2785 Nov 27 04:43 pandaJob.out
[2025-11-27 17:17:20] -rw-------. 1 boincer umatlas        57 Nov 27 04:43 setup.sh.local
[2025-11-27 17:17:20] -rw-------. 1 boincer umatlas    991551 Nov 27 04:43 agis_schedconf.cvmfs.json
[2025-11-27 17:17:20] drwx------. 5 boincer umatlas      4096 Nov 27 04:43 pilot3
[2025-11-27 17:17:20] -rw-r--r--. 1 boincer umatlas       533 Nov 27 17:06 boinc_task_state.xml
[2025-11-27 17:17:20] -rw-r--r--. 1 boincer umatlas      6947 Nov 27 17:11 init_data.xml
[2025-11-27 17:17:20] -rw-------. 1 boincer umatlas 918414465 Nov 27 17:15 HITS.47556161._004804.pool.root.1
[2025-11-27 17:17:20] -rw-------. 1 boincer umatlas      1049 Nov 27 17:16 memory_monitor_summary.json
[2025-11-27 17:17:20] -rw-------. 1 boincer umatlas   1516240 Nov 27 17:16 agis_ddmendpoints.agis.ALL.json
[2025-11-27 17:17:20] -rw-------. 1 boincer umatlas   1919129 Nov 27 17:16 log.47556161._004804.job.log.tgz.1
[2025-11-27 17:17:20] -rw-------. 1 boincer umatlas      8580 Nov 27 17:16 heartbeat.json
[2025-11-27 17:17:20] -rw-------. 1 boincer umatlas        95 Nov 27 17:16 pilot_heartbeat.json
[2025-11-27 17:17:20] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 17:17 boinc_mmap_file
[2025-11-27 17:17:20] -rw-r--r--. 1 boincer umatlas        29 Nov 27 17:17 wrapper_checkpoint.txt
[2025-11-27 17:17:20] -rw-------. 1 boincer umatlas      5082 Nov 27 17:17 pilotlog.txt
[2025-11-27 17:17:20] -rw-------. 1 boincer umatlas   5450962 Nov 27 17:17 log.47556161._004804.job.log.1
[2025-11-27 17:17:20] -rw-------. 1 boincer umatlas       353 Nov 27 17:17 output.list
[2025-11-27 17:17:20] -rw-r--r--. 1 boincer umatlas       620 Nov 27 17:17 runtime_log
[2025-11-27 17:17:20] -rw-------. 1 boincer umatlas   7393280 Nov 27 17:17 result.tar.gz
[2025-11-27 17:17:20] -rw-------. 1 boincer umatlas       659 Nov 27 17:17 WRgMDm0MMi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm1xMKDmofznZm.diag
[2025-11-27 17:17:20] -rw-r--r--. 1 boincer umatlas      9338 Nov 27 17:17 runtime_log.err
[2025-11-27 17:17:20] -rw-r--r--. 1 boincer umatlas     21498 Nov 27 17:17 stderr.txt
[2025-11-27 17:17:20] HITS file was successfully produced:
[2025-11-27 17:17:20] -rw-------. 1 boincer umatlas 918414465 Nov 27 17:15 shared/HITS.pool.root.1
[2025-11-27 17:17:20]  *** Contents of shared directory: ***
[2025-11-27 17:17:20] total 1306360
[2025-11-27 17:17:20] -rw-r--r--. 2 boincer umatlas 411282116 Nov 27 04:43 ATLAS.root_0
[2025-11-27 17:17:20] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 04:43 start_atlas.sh
[2025-11-27 17:17:20] -rw-r--r--. 2 boincer umatlas    590113 Nov 27 04:43 input.tar.gz
[2025-11-27 17:17:20] -rw-------. 1 boincer umatlas 918414465 Nov 27 17:15 HITS.pool.root.1
[2025-11-27 17:17:20] -rw-------. 1 boincer umatlas   7393280 Nov 27 17:17 result.tar.gz
17:17:22 (2729734): run_atlas exited; CPU time 204056.588696
17:17:22 (2729734): called boinc_finish(0)

</stderr_txt>
]]>

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