Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
01:17:09 (14527): wrapper (7.7.26015): starting
01:17:09 (14527): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 01:17:09] Arguments: --nthreads 8
[2025-11-27 01:17:09] Threads: 8
[2025-11-27 01:17:09] Checking for CVMFS
[2025-11-27 01:17:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 01:17:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 01:17:10] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 01:17:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 01:17:12] 2.13.3.0 11959 31120 370208 153349 3 394 27451032 32935936 48647 16776704 0 162255553 99.512 202688585 34566 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 01:17:12] CVMFS is ok
[2025-11-27 01:17:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 01:17:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 01:17:12] Further information can be found at the LHC@home message board.
[2025-11-27 01:17:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 01:17:12] Checking for apptainer binary...
[2025-11-27 01:17:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 01:17:12] Running /usr/bin/apptainer --version
[2025-11-27 01:17:12] apptainer version 1.4.4-1.el9
[2025-11-27 01:17:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 01:17:13] c6-12-27-3.aglt2.org
[2025-11-27 01:17:13] apptainer works
[2025-11-27 01:17:13] Set ATHENA_PROC_NUMBER=8
[2025-11-27 01:17:13] Set ATHENA_CORE_NUMBER=8
[2025-11-27 01:17:13] Starting ATLAS job with PandaID=6898214287
[2025-11-27 01:17:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 00:21:53]  *** The last 200 lines of the pilot log: ***
[2025-11-28 00:21:53] 2025-11-28 05:20:35,275 | INFO     | time since job start (82923s) is within the limit (172800.0s)
[2025-11-28 00:21:53] 2025-11-28 05:20:36,197 | INFO     | monitor loop #3908: job 0:6898214287 is in state 'finished'
[2025-11-28 00:21:53] 2025-11-28 05:20:36,197 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:21:53] 2025-11-28 05:20:38,778 | INFO     | monitor loop #3909: job 0:6898214287 is in state 'finished'
[2025-11-28 00:21:53] 2025-11-28 05:20:38,778 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:21:53] 2025-11-28 05:20:41,378 | INFO     | monitor loop #3910: job 0:6898214287 is in state 'finished'
[2025-11-28 00:21:53] 2025-11-28 05:20:41,378 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:21:53] 2025-11-28 05:20:43,882 | INFO     | PID=27291 has CPU usage=5.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 00:21:53] 2025-11-28 05:20:43,902 | INFO     | .. there are 70 such processes running
[2025-11-28 00:21:53] 2025-11-28 05:20:43,959 | INFO     | monitor loop #3911: job 0:6898214287 is in state 'finished'
[2025-11-28 00:21:53] 2025-11-28 05:20:43,959 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:21:53] 2025-11-28 05:20:44,904 | INFO     | time since job start (82932s) is within the limit (172800.0s)
[2025-11-28 00:21:53] 2025-11-28 05:20:46,282 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-28 00:21:53] 2025-11-28 05:20:46,326 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2655.513031249999
[2025-11-28 00:21:53] 2025-11-28 05:20:46,382 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6898214287/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 00:21:53] 2025-11-28 05:20:46,383 | INFO     | extracted standard info from prmon json
[2025-11-28 00:21:53] 2025-11-28 05:20:46,383 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 00:21:53] 2025-11-28 05:20:46,383 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 00:21:53] 2025-11-28 05:20:46,610 | INFO     | monitor loop #3912: job 0:6898214287 is in state 'finished'
[2025-11-28 00:21:53] 2025-11-28 05:20:46,610 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:21:53] 2025-11-28 05:20:46,639 | INFO     | fitting pss+swap vs Time
[2025-11-28 00:21:53] 2025-11-28 05:20:46,662 | INFO     | sum of square deviations: 774854543026.7025
[2025-11-28 00:21:53] 2025-11-28 05:20:46,882 | INFO     | sum of deviations: 3726178201232.036
[2025-11-28 00:21:53] 2025-11-28 05:20:46,882 | INFO     | mean x: 1764265815.1252763
[2025-11-28 00:21:53] 2025-11-28 05:20:46,882 | INFO     | mean y: 2921688.5821665437
[2025-11-28 00:21:53] 2025-11-28 05:20:46,882 | INFO     | intersect: -8481211082.737374
[2025-11-28 00:21:53] 2025-11-28 05:20:46,884 | INFO     | chi2: 16.438417753519417
[2025-11-28 00:21:53] 2025-11-28 05:20:46,903 | INFO     | sum of square deviations: 766321904484.0356
[2025-11-28 00:21:53] 2025-11-28 05:20:46,921 | INFO     | time since job start (82934s) is within the limit (172800.0s)
[2025-11-28 00:21:53] 2025-11-28 05:20:47,164 | INFO     | sum of deviations: 4217405626153.9336
[2025-11-28 00:21:53] 2025-11-28 05:20:47,165 | INFO     | mean x: 1764265662.633136
[2025-11-28 00:21:53] 2025-11-28 05:20:47,165 | INFO     | mean y: 2930465.903106509
[2025-11-28 00:21:53] 2025-11-28 05:20:47,165 | INFO     | intersect: -9706597459.73926
[2025-11-28 00:21:53] 2025-11-28 05:20:47,186 | INFO     | chi2: 12.849485957610883
[2025-11-28 00:21:53] 2025-11-28 05:20:47,186 | INFO     | current chi2=12.849485957610883 (change=21.832586625559838 %)
[2025-11-28 00:21:53] 2025-11-28 05:20:47,186 | INFO     | right removable region: 1351
[2025-11-28 00:21:53] 2025-11-28 05:20:47,188 | INFO     | sum of square deviations: 766320227780.3021
[2025-11-28 00:21:53] 2025-11-28 05:20:47,418 | INFO     | sum of deviations: 3200280964125.2534
[2025-11-28 00:21:53] 2025-11-28 05:20:47,418 | INFO     | mean x: 1764265967.6323965
[2025-11-28 00:21:53] 2025-11-28 05:20:47,419 | INFO     | mean y: 2931084.199704142
[2025-11-28 00:21:53] 2025-11-28 05:20:47,419 | INFO     | intersect: -7364937578.516432
[2025-11-28 00:21:53] 2025-11-28 05:20:47,444 | INFO     | chi2: 12.706129116608677
[2025-11-28 00:21:53] 2025-11-28 05:20:47,444 | INFO     | current chi2=12.706129116608677 (change=22.70467080757616 %)
[2025-11-28 00:21:53] 2025-11-28 05:20:47,444 | INFO     | left removable region: 10
[2025-11-28 00:21:53] 2025-11-28 05:20:47,446 | INFO     | sum of square deviations: 747767691084.8711
[2025-11-28 00:21:53] 2025-11-28 05:20:47,717 | INFO     | sum of deviations: 3359527601035.65
[2025-11-28 00:21:53] 2025-11-28 05:20:47,717 | INFO     | mean x: 1764265937.149888
[2025-11-28 00:21:53] 2025-11-28 05:20:47,718 | INFO     | mean y: 2949183.340044743
[2025-11-28 00:21:53] 2025-11-28 05:20:47,718 | INFO     | intersect: -7923443173.653826
[2025-11-28 00:21:53] 2025-11-28 05:20:47,736 | INFO     | chi2: 6.133355479481038
[2025-11-28 00:21:53] 2025-11-28 05:20:47,736 | INFO     | current memory leak: 4.49 B/s (using 1341 data points, chi2=6.13)
[2025-11-28 00:21:53] 2025-11-28 05:20:47,738 | INFO     | could have reported an average CPU frequency of 2693 MHz (48 samples)
[2025-11-28 00:21:53] 2025-11-28 05:20:47,739 | INFO     | ..............................
[2025-11-28 00:21:53] 2025-11-28 05:20:47,739 | INFO     | . Timing measurements:
[2025-11-28 00:21:53] 2025-11-28 05:20:47,739 | INFO     | . get job = 0 s
[2025-11-28 00:21:53] 2025-11-28 05:20:47,739 | INFO     | . initial setup = 6 s
[2025-11-28 00:21:53] 2025-11-28 05:20:47,739 | INFO     | . payload setup = 44 s
[2025-11-28 00:21:53] 2025-11-28 05:20:47,739 | INFO     | . stage-in = 0 s
[2025-11-28 00:21:53] 2025-11-28 05:20:47,739 | INFO     | . payload execution = 82761 s
[2025-11-28 00:21:53] 2025-11-28 05:20:47,739 | INFO     | . stage-out = 18 s
[2025-11-28 00:21:53] 2025-11-28 05:20:47,739 | INFO     | . log creation = 6 s
[2025-11-28 00:21:53] 2025-11-28 05:20:47,740 | INFO     | ..............................
[2025-11-28 00:21:53] 2025-11-28 05:20:48,325 | INFO     | 
[2025-11-28 00:21:53] 2025-11-28 05:20:48,325 | INFO     | job summary report
[2025-11-28 00:21:53] 2025-11-28 05:20:48,325 | INFO     | --------------------------------------------------
[2025-11-28 00:21:53] 2025-11-28 05:20:48,325 | INFO     | PanDA job id: 6898214287
[2025-11-28 00:21:53] 2025-11-28 05:20:48,325 | INFO     | task id: 47556161
[2025-11-28 00:21:53] 2025-11-28 05:20:48,326 | INFO     | errors: (none)
[2025-11-28 00:21:53] 2025-11-28 05:20:48,326 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 00:21:53] 2025-11-28 05:20:48,326 | INFO     | pilot state: finished 
[2025-11-28 00:21:53] 2025-11-28 05:20:48,326 | INFO     | transexitcode: 0
[2025-11-28 00:21:53] 2025-11-28 05:20:48,326 | INFO     | exeerrorcode: 0
[2025-11-28 00:21:53] 2025-11-28 05:20:48,326 | INFO     | exeerrordiag: 
[2025-11-28 00:21:53] 2025-11-28 05:20:48,326 | INFO     | exitcode: 0
[2025-11-28 00:21:53] 2025-11-28 05:20:48,326 | INFO     | exitmsg: OK
[2025-11-28 00:21:53] 2025-11-28 05:20:48,326 | INFO     | cpuconsumptiontime: 262227 s
[2025-11-28 00:21:53] 2025-11-28 05:20:48,326 | INFO     | nevents: 1000
[2025-11-28 00:21:53] 2025-11-28 05:20:48,327 | INFO     | neventsw: 0
[2025-11-28 00:21:53] 2025-11-28 05:20:48,327 | INFO     | pid: 41812
[2025-11-28 00:21:53] 2025-11-28 05:20:48,327 | INFO     | pgrp: 41812
[2025-11-28 00:21:53] 2025-11-28 05:20:48,327 | INFO     | corecount: 8
[2025-11-28 00:21:53] 2025-11-28 05:20:48,327 | INFO     | event service: False
[2025-11-28 00:21:53] 2025-11-28 05:20:48,327 | INFO     | sizes: {0: 2284037, 1: 2284121, 2: 2284320, 13: 2284320, 24: 2284376, 34: 2284666, 35: 2284822, 82810: 2345481, 82811: 2345480, 82832: 2354530, 82834: 2354586, 828
[2025-11-28 00:21:53] 2025-11-28 05:20:48,327 | INFO     | --------------------------------------------------
[2025-11-28 00:21:53] 2025-11-28 05:20:48,327 | INFO     | 
[2025-11-28 00:21:53] 2025-11-28 05:20:48,327 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-28 00:21:53] 2025-11-28 05:20:48,566 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 00:21:53] 2025-11-28 05:20:48,567 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 00:21:53] 2025-11-28 05:20:48,567 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 00:21:53] 2025-11-28 05:20:48,567 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 00:21:53] 2025-11-28 05:20:48,567 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 00:21:53] 2025-11-28 05:20:48,567 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 00:21:53] 2025-11-28 05:20:48,567 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 00:21:53] 2025-11-28 05:20:48,567 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 00:21:53] 2025-11-28 05:20:48,567 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 00:21:53] 2025-11-28 05:20:48,568 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 00:21:53] 2025-11-28 05:20:48,568 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 00:21:53] 2025-11-28 05:20:48,568 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 00:21:53] 2025-11-28 05:20:48,568 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 00:21:53] 2025-11-28 05:20:48,568 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 00:21:53] 2025-11-28 05:20:48,568 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 00:21:53] 2025-11-28 05:20:48,568 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 00:21:53] 2025-11-28 05:20:48,568 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 00:21:53] 2025-11-28 05:20:48,568 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 00:21:53] 2025-11-28 05:20:48,568 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 00:21:53] 2025-11-28 05:20:48,568 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 00:21:53] 2025-11-28 05:20:48,569 | INFO     | job 6898214287 has completed (purged errors)
[2025-11-28 00:21:53] 2025-11-28 05:20:48,569 | INFO     | overall cleanup function is called
[2025-11-28 00:21:53] 2025-11-28 05:20:49,674 | INFO     | --- collectZombieJob: --- 10, [41812]
[2025-11-28 00:21:53] 2025-11-28 05:20:49,674 | INFO     | zombie collector waiting for pid 41812
[2025-11-28 00:21:53] 2025-11-28 05:20:49,674 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 00:21:53] 2025-11-28 05:20:49,674 | INFO     | collected zombie processes
[2025-11-28 00:21:53] 2025-11-28 05:20:49,674 | INFO     | will attempt to kill all subprocesses of pid=41812
[2025-11-28 00:21:53] 2025-11-28 05:20:52,039 | INFO     | process IDs to be killed: [41812] (in reverse order)
[2025-11-28 00:21:53] 2025-11-28 05:20:52,710 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 00:21:53] 2025-11-28 05:20:52,710 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 00:21:53] 2025-11-28 05:20:52,796 | INFO     | did not find any defunct processes belonging to 41812
[2025-11-28 00:21:53] 2025-11-28 05:20:52,926 | INFO     | did not find any defunct processes belonging to 41812
[2025-11-28 00:21:53] 2025-11-28 05:20:52,950 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 00:21:53] 2025-11-28 05:20:52,950 | INFO     | ready for new job
[2025-11-28 00:21:53] 2025-11-28 05:20:52,951 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 00:21:53] 2025-11-28 05:20:52,967 | INFO     | ***************************************
[2025-11-28 00:21:53] 2025-11-28 05:20:52,967 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 00:21:53] 2025-11-28 05:20:52,967 | INFO     | ***************************************
[2025-11-28 00:21:53] 2025-11-28 05:20:52,967 | INFO     | 
[2025-11-28 00:21:53] 2025-11-28 05:20:52,980 | INFO     | architecture information:
[2025-11-28 00:21:53] 2025-11-28 05:20:52,981 | INFO     | executing command: cat /etc/os-release
[2025-11-28 00:21:53] 2025-11-28 05:20:53,118 | INFO     | cat /etc/os-release:
[2025-11-28 00:21:53] NAME="CentOS Linux"
[2025-11-28 00:21:53] VERSION="7 (Core)"
[2025-11-28 00:21:53] ID="centos"
[2025-11-28 00:21:53] ID_LIKE="rhel fedora"
[2025-11-28 00:21:53] VERSION_ID="7"
[2025-11-28 00:21:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 00:21:53] ANSI_COLOR="0;31"
[2025-11-28 00:21:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 00:21:53] HOME_URL="https://www.centos.org/"
[2025-11-28 00:21:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 00:21:53] 
[2025-11-28 00:21:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 00:21:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 00:21:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 00:21:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 00:21:53] 
[2025-11-28 00:21:53] 2025-11-28 05:20:53,119 | INFO     | ***************************************
[2025-11-28 00:21:53] 2025-11-28 05:20:53,626 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-28 00:21:53] 2025-11-28 05:20:53,838 | INFO     | sufficient remaining disk space (84469088256 B)
[2025-11-28 00:21:53] 2025-11-28 05:20:53,839 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 00:21:53] 2025-11-28 05:20:53,839 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 00:21:53] 2025-11-28 05:20:53,839 | INFO     | update_server=False
[2025-11-28 00:21:53] 2025-11-28 05:20:53,839 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 00:21:53] 2025-11-28 05:20:53,839 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 00:21:53] 2025-11-28 05:20:53,840 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 00:21:53] 2025-11-28 05:20:54,202 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-28 00:21:53] 2025-11-28 05:20:54,202 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-28 00:21:53] 2025-11-28 05:20:54,202 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 00:21:53] 2025-11-28 05:20:54,202 | INFO     | will abort loop
[2025-11-28 00:21:53] 2025-11-28 05:20:54,582 | INFO     | all job control threads have been joined
[2025-11-28 00:21:53] 2025-11-28 05:20:54,582 | INFO     | all data control threads have been joined
[2025-11-28 00:21:53] 2025-11-28 05:20:54,781 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 00:21:53] 2025-11-28 05:20:54,785 | INFO     | all payload control threads have been joined
[2025-11-28 00:21:53] 2025-11-28 05:20:54,844 | INFO     | [job] retrieve thread has finished
[2025-11-28 00:21:53] 2025-11-28 05:20:54,845 | INFO     | [job] queue monitor thread has finished
[2025-11-28 00:21:53] 2025-11-28 05:20:55,208 | INFO     | [job] job monitor thread has finished
[2025-11-28 00:21:53] 2025-11-28 05:20:55,277 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 00:21:53] 2025-11-28 05:20:55,588 | INFO     | [job] control thread has finished
[2025-11-28 00:21:53] 2025-11-28 05:20:55,589 | INFO     | [data] control thread has finished
[2025-11-28 00:21:53] 2025-11-28 05:20:55,674 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 00:21:53] 2025-11-28 05:20:55,682 | INFO     | [job] validate thread has finished
[2025-11-28 00:21:53] 2025-11-28 05:20:55,760 | INFO     | [data] copytool_in thread has finished
[2025-11-28 00:21:53] 2025-11-28 05:20:55,791 | INFO     | [payload] control thread has finished
[2025-11-28 00:21:53] 2025-11-28 05:20:55,847 | INFO     | [data] copytool_out thread has finished
[2025-11-28 00:21:53] 2025-11-28 05:20:56,153 | INFO     | [payload] failed_post thread has finished
[2025-11-28 00:21:53] 2025-11-28 05:20:56,276 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 00:21:53] 2025-11-28 05:20:56,286 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 00:21:53] 2025-11-28 05:20:56,305 | INFO     | [payload] validate_post thread has finished
[2025-11-28 00:21:53] 2025-11-28 05:20:58,796 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 00:21:53] 2025-11-28 05:21:08,132 | INFO     | [monitor] cgroup control has ended
[2025-11-28 00:21:53] 2025-11-28 05:21:10,245 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140139060123456)>', '<ExcThread(monitor, started 140138105517824)>']
[2025-11-28 00:21:53] 2025-11-28 05:21:15,285 | INFO     | all workflow threads have been joined
[2025-11-28 00:21:53] 2025-11-28 05:21:15,285 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 00:21:53] 2025-11-28 05:21:15,285 | INFO     | traces error code: 0
[2025-11-28 00:21:53] 2025-11-28 05:21:15,286 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 00:21:53] 2025-11-28 05:21:26,211 | INFO     | PID=27291 has CPU usage=5.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 00:21:53] 2025-11-28 05:21:26,212 | INFO     | .. there are 70 such processes running
[2025-11-28 00:21:53] 2025-11-28 05:21:26,225 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 00:21:53] 2025-11-28 05:21:26,225 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 00:21:53] 2025-11-28 05:21:26,225 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 00:21:53] 2025-11-28 05:21:26,225 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 00:21:53] 2025-11-28 05:21:26,225 | INFO     | [monitor] control thread has ended
[2025-11-28 00:21:53] 2025-11-28 05:21:30,702 [wrapper] ==== pilot stdout END ====
[2025-11-28 00:21:53] 2025-11-28 05:21:30,786 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 00:21:53] 2025-11-28 05:21:30,802 [wrapper] pilotpid: 27291
[2025-11-28 00:21:53] 2025-11-28 05:21:30,834 [wrapper] Pilot exit status: 0
[2025-11-28 00:21:53] 2025-11-28 05:21:30,959 [wrapper] pandaids: 6898214287
[2025-11-28 00:21:53] 2025-11-28 05:21:31,883 [wrapper] cleanup supervisor_pilot 2011571 27294
[2025-11-28 00:21:53] 2025-11-28 05:21:31,932 [wrapper] Test setup, not cleaning
[2025-11-28 00:21:53] 2025-11-28 05:21:31,981 [wrapper] apfmon messages muted
[2025-11-28 00:21:53] 2025-11-28 05:21:32,016 [wrapper] ==== wrapper stdout END ====
[2025-11-28 00:21:53] 2025-11-28 05:21:32,088 [wrapper] ==== wrapper stderr END ====
[2025-11-28 00:21:53]  *** Error codes and diagnostics ***
[2025-11-28 00:21:53]     "exeErrorCode": 0,
[2025-11-28 00:21:53]     "exeErrorDiag": "",
[2025-11-28 00:21:53]     "pilotErrorCode": 0,
[2025-11-28 00:21:53]     "pilotErrorDiag": "",
[2025-11-28 00:21:53]  *** Listing of results directory ***
[2025-11-28 00:21:53] total 1337524
[2025-11-28 00:21:53] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 22:33 pilot3.tar.gz
[2025-11-28 00:21:53] -rwx------. 1 boincer umatlas     36292 Nov 25 23:28 runpilot2-wrapper.sh
[2025-11-28 00:21:53] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 23:28 queuedata.json
[2025-11-28 00:21:53] -rw-r--r--. 1 boincer umatlas       100 Nov 27 01:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 00:21:53] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 01:17 run_atlas
[2025-11-28 00:21:53] -rw-r--r--. 1 boincer umatlas       105 Nov 27 01:17 job.xml
[2025-11-28 00:21:53] -rw-r--r--. 2 boincer umatlas 411285683 Nov 27 01:17 EVNT.47483658._002491.pool.root.1
[2025-11-28 00:21:53] -rw-r--r--. 2 boincer umatlas    590108 Nov 27 01:17 input.tar.gz
[2025-11-28 00:21:53] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 01:17 start_atlas.sh
[2025-11-28 00:21:53] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 01:17 shared
[2025-11-28 00:21:53] -rw-r--r--. 1 boincer umatlas         0 Nov 27 01:17 boinc_lockfile
[2025-11-28 00:21:53] -rw-r--r--. 1 boincer umatlas      2785 Nov 27 01:17 pandaJob.out
[2025-11-28 00:21:53] -rw-------. 1 boincer umatlas        57 Nov 27 01:17 setup.sh.local
[2025-11-28 00:21:53] -rw-------. 1 boincer umatlas    991578 Nov 27 01:18 agis_schedconf.cvmfs.json
[2025-11-28 00:21:53] drwx------. 5 boincer umatlas      4096 Nov 27 01:18 pilot3
[2025-11-28 00:21:53] -rw-r--r--. 1 boincer umatlas       533 Nov 28 00:00 boinc_task_state.xml
[2025-11-28 00:21:53] -rw-------. 1 boincer umatlas 931853016 Nov 28 00:17 HITS.47556161._004738.pool.root.1
[2025-11-28 00:21:53] -rw-r--r--. 1 boincer umatlas      6879 Nov 28 00:19 init_data.xml
[2025-11-28 00:21:53] -rw-------. 1 boincer umatlas      1059 Nov 28 00:19 memory_monitor_summary.json
[2025-11-28 00:21:53] -rw-------. 1 boincer umatlas   1516240 Nov 28 00:19 agis_ddmendpoints.agis.ALL.json
[2025-11-28 00:21:53] -rw-------. 1 boincer umatlas   2297771 Nov 28 00:20 log.47556161._004738.job.log.tgz.1
[2025-11-28 00:21:53] -rw-------. 1 boincer umatlas      8626 Nov 28 00:20 heartbeat.json
[2025-11-28 00:21:53] -rw-------. 1 boincer umatlas        95 Nov 28 00:21 pilot_heartbeat.json
[2025-11-28 00:21:53] -rw-------. 1 boincer umatlas       821 Nov 28 00:21 pilotlog.txt
[2025-11-28 00:21:53] -rw-------. 1 boincer umatlas   8985593 Nov 28 00:21 log.47556161._004738.job.log.1
[2025-11-28 00:21:53] -rw-------. 1 boincer umatlas       353 Nov 28 00:21 output.list
[2025-11-28 00:21:53] -rw-r--r--. 1 boincer umatlas       620 Nov 28 00:21 runtime_log
[2025-11-28 00:21:53] -rw-------. 1 boincer umatlas  11304960 Nov 28 00:21 result.tar.gz
[2025-11-28 00:21:53] -rw-r--r--. 1 boincer umatlas      9353 Nov 28 00:21 runtime_log.err
[2025-11-28 00:21:53] -rw-------. 1 boincer umatlas       662 Nov 28 00:21 dKLNDmtJMi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmxvJKDmE85JYn.diag
[2025-11-28 00:21:53] -rw-r--r--. 1 boincer umatlas        29 Nov 28 00:21 wrapper_checkpoint.txt
[2025-11-28 00:21:53] -rw-r--r--. 1 boincer umatlas      8192 Nov 28 00:21 boinc_mmap_file
[2025-11-28 00:21:53] -rw-r--r--. 1 boincer umatlas     21859 Nov 28 00:21 stderr.txt
[2025-11-28 00:21:53] HITS file was successfully produced:
[2025-11-28 00:21:53] -rw-------. 1 boincer umatlas 931853016 Nov 28 00:17 shared/HITS.pool.root.1
[2025-11-28 00:21:53]  *** Contents of shared directory: ***
[2025-11-28 00:21:53] total 1323308
[2025-11-28 00:21:53] -rw-r--r--. 2 boincer umatlas 411285683 Nov 27 01:17 ATLAS.root_0
[2025-11-28 00:21:53] -rw-r--r--. 2 boincer umatlas    590108 Nov 27 01:17 input.tar.gz
[2025-11-28 00:21:53] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 01:17 start_atlas.sh
[2025-11-28 00:21:53] -rw-------. 1 boincer umatlas 931853016 Nov 28 00:17 HITS.pool.root.1
[2025-11-28 00:21:53] -rw-------. 1 boincer umatlas  11304960 Nov 28 00:21 result.tar.gz
00:21:54 (14527): run_atlas exited; CPU time 265796.525201
00:21:54 (14527): called boinc_finish(0)

</stderr_txt>
]]>

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