Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
01:00:52 (2542864): wrapper (7.7.26015): starting
01:00:52 (2542864): wrapper: running run_atlas (--nthreads 12)
[2025-11-27 01:00:52] Arguments: --nthreads 12
[2025-11-27 01:00:52] Threads: 12
[2025-11-27 01:00:52] Checking for CVMFS
[2025-11-27 01:00:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 01:00:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 01:00:54] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 01:00:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 01:00:54] 2.13.2.0 2543092 0 29836 153350 3 1 12433030 16777217 0 130560 0 0 0.000 1291 1335 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://127.0.0.1:3128 1
[2025-11-27 01:00:54] CVMFS is ok
[2025-11-27 01:00:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 01:00:54] Checking for apptainer binary...
[2025-11-27 01:00:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 01:00:54] Running /usr/bin/apptainer --version
[2025-11-27 01:00:54] apptainer version 1.3.0-bp160.1.36
[2025-11-27 01:00:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 01:00:54] boinc-runner
[2025-11-27 01:00:54] apptainer works
[2025-11-27 01:00:54] Set ATHENA_PROC_NUMBER=12
[2025-11-27 01:00:54] Set ATHENA_CORE_NUMBER=12
[2025-11-27 01:00:54] Starting ATLAS job with PandaID=6897663398
[2025-11-27 01:00:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 03:53:26]  *** The last 200 lines of the pilot log: ***
[2025-11-27 03:53:26] 2025-11-27 09:52:45,843 | INFO     | mean y: 3466685.3136094674
[2025-11-27 03:53:26] 2025-11-27 09:52:45,843 | INFO     | intersect: -88203869423.84998
[2025-11-27 03:53:26] 2025-11-27 09:52:45,843 | INFO     | chi2: 3.0994104688917092
[2025-11-27 03:53:26] 2025-11-27 09:52:45,844 | INFO     | sum of square deviations: 1367709365.0
[2025-11-27 03:53:26] 2025-11-27 09:52:45,844 | INFO     | sum of deviations: 108006786842.99998
[2025-11-27 03:53:26] 2025-11-27 09:52:45,844 | INFO     | mean x: 1764231852.5
[2025-11-27 03:53:26] 2025-11-27 09:52:45,844 | INFO     | mean y: 3505307.2560975607
[2025-11-27 03:53:26] 2025-11-27 09:52:45,844 | INFO     | intersect: -139316308178.556
[2025-11-27 03:53:26] 2025-11-27 09:52:45,844 | INFO     | chi2: 1.6028415859369558
[2025-11-27 03:53:26] 2025-11-27 09:52:45,844 | INFO     | current chi2=1.6028415859369558 (change=48.28559811536993 %)
[2025-11-27 03:53:26] 2025-11-27 09:52:45,844 | INFO     | sum of square deviations: 1246386160.0
[2025-11-27 03:53:26] 2025-11-27 09:52:45,844 | INFO     | sum of deviations: 101478385855.99976
[2025-11-27 03:53:26] 2025-11-27 09:52:45,844 | INFO     | mean x: 1764231700.0
[2025-11-27 03:53:26] 2025-11-27 09:52:45,844 | INFO     | mean y: 3497101.8050314467
[2025-11-27 03:53:26] 2025-11-27 09:52:45,844 | INFO     | intersect: -143636885740.68933
[2025-11-27 03:53:26] 2025-11-27 09:52:45,845 | INFO     | chi2: 1.6018912754805206
[2025-11-27 03:53:26] 2025-11-27 09:52:45,845 | INFO     | current chi2=1.6018912754805206 (change=0.059289106595005144 %)
[2025-11-27 03:53:26] 2025-11-27 09:52:45,845 | INFO     | right removable region: 158
[2025-11-27 03:53:26] 2025-11-27 09:52:45,845 | INFO     | sum of square deviations: 1367709365.0
[2025-11-27 03:53:26] 2025-11-27 09:52:45,845 | INFO     | sum of deviations: 34458373661.5
[2025-11-27 03:53:26] 2025-11-27 09:52:45,845 | INFO     | mean x: 1764232157.5
[2025-11-27 03:53:26] 2025-11-27 09:52:45,845 | INFO     | mean y: 3513872.274390244
[2025-11-27 03:53:26] 2025-11-27 09:52:45,845 | INFO     | intersect: -44444943135.08793
[2025-11-27 03:53:26] 2025-11-27 09:52:45,845 | INFO     | chi2: 1.5625455435158293
[2025-11-27 03:53:26] 2025-11-27 09:52:45,845 | INFO     | current chi2=1.5625455435158293 (change=49.585717696999126 %)
[2025-11-27 03:53:26] 2025-11-27 09:52:45,845 | INFO     | sum of square deviations: 1246386160.0
[2025-11-27 03:53:26] 2025-11-27 09:52:45,845 | INFO     | sum of deviations: 25186540649.0
[2025-11-27 03:53:26] 2025-11-27 09:52:45,845 | INFO     | mean x: 1764232310.0
[2025-11-27 03:53:26] 2025-11-27 09:52:45,845 | INFO     | mean y: 3525506.3396226414
[2025-11-27 03:53:26] 2025-11-27 09:52:45,846 | INFO     | intersect: -35647471123.86539
[2025-11-27 03:53:26] 2025-11-27 09:52:45,846 | INFO     | chi2: 1.5453060359539252
[2025-11-27 03:53:26] 2025-11-27 09:52:45,846 | INFO     | current chi2=1.5453060359539252 (change=1.1032963252459222 %)
[2025-11-27 03:53:26] 2025-11-27 09:52:45,846 | INFO     | left removable region: 20
[2025-11-27 03:53:26] 2025-11-27 09:52:45,846 | INFO     | sum of square deviations: 814878534.5
[2025-11-27 03:53:26] 2025-11-27 09:52:45,846 | INFO     | sum of deviations: 38526920826.0
[2025-11-27 03:53:26] 2025-11-27 09:52:45,846 | INFO     | mean x: 1764232279.5
[2025-11-27 03:53:26] 2025-11-27 09:52:45,846 | INFO     | mean y: 3582643.0
[2025-11-27 03:53:26] 2025-11-27 09:52:45,846 | INFO     | intersect: -83408158461.06021
[2025-11-27 03:53:26] 2025-11-27 09:52:45,846 | INFO     | chi2: 0.009878988841225973
[2025-11-27 03:53:26] 2025-11-27 09:52:45,846 | INFO     | current memory leak: 47.28 B/s (using 138 data points, chi2=0.01)
[2025-11-27 03:53:26] 2025-11-27 09:52:45,846 | INFO     | could have reported an average CPU frequency of 4192 MHz (9 samples)
[2025-11-27 03:53:26] 2025-11-27 09:52:45,846 | INFO     | ..............................
[2025-11-27 03:53:26] 2025-11-27 09:52:45,846 | INFO     | . Timing measurements:
[2025-11-27 03:53:26] 2025-11-27 09:52:45,846 | INFO     | . get job = 0 s
[2025-11-27 03:53:26] 2025-11-27 09:52:45,846 | INFO     | . initial setup = 2 s
[2025-11-27 03:53:26] 2025-11-27 09:52:45,846 | INFO     | . payload setup = 2 s
[2025-11-27 03:53:26] 2025-11-27 09:52:45,846 | INFO     | . stage-in = 0 s
[2025-11-27 03:53:26] 2025-11-27 09:52:45,846 | INFO     | . payload execution = 10279 s
[2025-11-27 03:53:26] 2025-11-27 09:52:45,846 | INFO     | . stage-out = 0 s
[2025-11-27 03:53:26] 2025-11-27 09:52:45,846 | INFO     | . log creation = 0 s
[2025-11-27 03:53:26] 2025-11-27 09:52:45,847 | INFO     | ..............................
[2025-11-27 03:53:26] 2025-11-27 09:52:45,874 | INFO     | 
[2025-11-27 03:53:26] 2025-11-27 09:52:45,874 | INFO     | job summary report
[2025-11-27 03:53:26] 2025-11-27 09:52:45,874 | INFO     | --------------------------------------------------
[2025-11-27 03:53:26] 2025-11-27 09:52:45,874 | INFO     | PanDA job id: 6897663398
[2025-11-27 03:53:26] 2025-11-27 09:52:45,874 | INFO     | task id: 47556161
[2025-11-27 03:53:26] 2025-11-27 09:52:45,874 | INFO     | errors: (none)
[2025-11-27 03:53:26] 2025-11-27 09:52:45,874 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 03:53:26] 2025-11-27 09:52:45,874 | INFO     | pilot state: finished 
[2025-11-27 03:53:26] 2025-11-27 09:52:45,874 | INFO     | transexitcode: 0
[2025-11-27 03:53:26] 2025-11-27 09:52:45,874 | INFO     | exeerrorcode: 0
[2025-11-27 03:53:26] 2025-11-27 09:52:45,874 | INFO     | exeerrordiag: 
[2025-11-27 03:53:26] 2025-11-27 09:52:45,874 | INFO     | exitcode: 0
[2025-11-27 03:53:26] 2025-11-27 09:52:45,874 | INFO     | exitmsg: OK
[2025-11-27 03:53:26] 2025-11-27 09:52:45,874 | INFO     | cpuconsumptiontime: 120238 s
[2025-11-27 03:53:26] 2025-11-27 09:52:45,874 | INFO     | nevents: 1000
[2025-11-27 03:53:26] 2025-11-27 09:52:45,874 | INFO     | neventsw: 0
[2025-11-27 03:53:26] 2025-11-27 09:52:45,874 | INFO     | pid: 2562145
[2025-11-27 03:53:26] 2025-11-27 09:52:45,874 | INFO     | pgrp: 2562145
[2025-11-27 03:53:26] 2025-11-27 09:52:45,874 | INFO     | corecount: 12
[2025-11-27 03:53:26] 2025-11-27 09:52:45,874 | INFO     | event service: False
[2025-11-27 03:53:26] 2025-11-27 09:52:45,874 | INFO     | sizes: {0: 2284265, 2: 2284527, 11: 2284555, 10285: 2314511, 10286: 2314510, 10287: 2323744, 10289: 2323998}
[2025-11-27 03:53:26] 2025-11-27 09:52:45,874 | INFO     | --------------------------------------------------
[2025-11-27 03:53:26] 2025-11-27 09:52:45,874 | INFO     | 
[2025-11-27 03:53:26] 2025-11-27 09:52:45,874 | INFO     | executing command: ls -lF /var/lib/boinc/slots/2
[2025-11-27 03:53:26] 2025-11-27 09:52:45,882 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 03:53:26] 2025-11-27 09:52:45,882 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 03:53:26] 2025-11-27 09:52:45,882 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 03:53:26] 2025-11-27 09:52:45,882 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 03:53:26] 2025-11-27 09:52:45,882 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 03:53:26] 2025-11-27 09:52:45,882 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 03:53:26] 2025-11-27 09:52:45,882 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 03:53:26] 2025-11-27 09:52:45,882 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 03:53:26] 2025-11-27 09:52:45,883 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 03:53:26] 2025-11-27 09:52:45,883 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 03:53:26] 2025-11-27 09:52:45,883 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 03:53:26] 2025-11-27 09:52:45,883 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 03:53:26] 2025-11-27 09:52:45,883 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 03:53:26] 2025-11-27 09:52:45,883 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 03:53:26] 2025-11-27 09:52:45,883 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 03:53:26] 2025-11-27 09:52:45,883 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 03:53:26] 2025-11-27 09:52:45,883 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 03:53:26] 2025-11-27 09:52:45,883 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 03:53:26] 2025-11-27 09:52:45,883 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 03:53:26] 2025-11-27 09:52:45,883 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 03:53:26] 2025-11-27 09:52:45,883 | INFO     | job 6897663398 has completed (purged errors)
[2025-11-27 03:53:26] 2025-11-27 09:52:45,883 | INFO     | overall cleanup function is called
[2025-11-27 03:53:26] 2025-11-27 09:52:46,895 | INFO     | --- collectZombieJob: --- 10, [2562145]
[2025-11-27 03:53:26] 2025-11-27 09:52:46,895 | INFO     | zombie collector waiting for pid 2562145
[2025-11-27 03:53:26] 2025-11-27 09:52:46,895 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 03:53:26] 2025-11-27 09:52:46,895 | INFO     | collected zombie processes
[2025-11-27 03:53:26] 2025-11-27 09:52:46,895 | INFO     | will attempt to kill all subprocesses of pid=2562145
[2025-11-27 03:53:26] 2025-11-27 09:52:46,943 | INFO     | process IDs to be killed: [2562145] (in reverse order)
[2025-11-27 03:53:26] 2025-11-27 09:52:46,968 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 03:53:26] 2025-11-27 09:52:46,969 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 03:53:26] 2025-11-27 09:52:46,970 | INFO     | did not find any defunct processes belonging to 2562145
[2025-11-27 03:53:26] 2025-11-27 09:52:46,972 | INFO     | did not find any defunct processes belonging to 2562145
[2025-11-27 03:53:26] 2025-11-27 09:52:46,972 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 03:53:26] 2025-11-27 09:52:46,972 | INFO     | ready for new job
[2025-11-27 03:53:26] 2025-11-27 09:52:46,972 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 03:53:26] 2025-11-27 09:52:46,974 | INFO     | ***************************************
[2025-11-27 03:53:26] 2025-11-27 09:52:46,974 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 03:53:26] 2025-11-27 09:52:46,974 | INFO     | ***************************************
[2025-11-27 03:53:26] 2025-11-27 09:52:46,974 | INFO     | 
[2025-11-27 03:53:26] 2025-11-27 09:52:46,975 | INFO     | architecture information:
[2025-11-27 03:53:26] 2025-11-27 09:52:46,975 | INFO     | executing command: cat /etc/os-release
[2025-11-27 03:53:26] 2025-11-27 09:52:46,979 | INFO     | cat /etc/os-release:
[2025-11-27 03:53:26] NAME="CentOS Linux"
[2025-11-27 03:53:26] VERSION="7 (Core)"
[2025-11-27 03:53:26] ID="centos"
[2025-11-27 03:53:26] ID_LIKE="rhel fedora"
[2025-11-27 03:53:26] VERSION_ID="7"
[2025-11-27 03:53:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 03:53:26] ANSI_COLOR="0;31"
[2025-11-27 03:53:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 03:53:26] HOME_URL="https://www.centos.org/"
[2025-11-27 03:53:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 03:53:26] 
[2025-11-27 03:53:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 03:53:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 03:53:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 03:53:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 03:53:26] 
[2025-11-27 03:53:26] 2025-11-27 09:52:46,979 | INFO     | ***************************************
[2025-11-27 03:53:26] 2025-11-27 09:52:47,482 | INFO     | executing command: df -mP /var/lib/boinc/slots/2
[2025-11-27 03:53:26] 2025-11-27 09:52:47,488 | INFO     | sufficient remaining disk space (3848246657024 B)
[2025-11-27 03:53:26] 2025-11-27 09:52:47,488 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 03:53:26] 2025-11-27 09:52:47,488 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 03:53:26] 2025-11-27 09:52:47,489 | INFO     | update_server=False
[2025-11-27 03:53:26] 2025-11-27 09:52:47,489 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 03:53:26] 2025-11-27 09:52:47,489 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 03:53:26] 2025-11-27 09:52:47,489 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 03:53:26] 2025-11-27 09:52:48,038 | INFO     | all data control threads have been joined
[2025-11-27 03:53:26] 2025-11-27 09:52:48,221 | INFO     | all job control threads have been joined
[2025-11-27 03:53:26] 2025-11-27 09:52:48,246 | WARNING  | process 2562145 can no longer be monitored (due to stat problems) - aborting
[2025-11-27 03:53:26] 2025-11-27 09:52:48,279 | INFO     | using path: /var/lib/boinc/slots/2/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 03:53:26] 2025-11-27 09:52:48,280 | INFO     | using path: /var/lib/boinc/slots/2/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 03:53:26] 2025-11-27 09:52:48,280 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-11-27 03:53:26] 2025-11-27 09:52:48,280 | WARNING  | maxPSS not found in memory monitor output
[2025-11-27 03:53:26] 2025-11-27 09:52:48,280 | INFO     | skipping file size check of payload stdout file (/var/lib/boinc/slots/2/PanDA_Pilot-6897663398/payload.stdout) since it has not been created yet
[2025-11-27 03:53:26] 2025-11-27 09:52:48,280 | INFO     | executing command: df -mP /var/lib/boinc/slots/2
[2025-11-27 03:53:26] 2025-11-27 09:52:48,286 | INFO     | sufficient remaining disk space (3848246657024 B)
[2025-11-27 03:53:26] 2025-11-27 09:52:48,286 | WARNING  | skipping size check of workdir since it has not been created yet
[2025-11-27 03:53:26] 2025-11-27 09:52:48,286 | INFO     | output file size check: skipping output file /var/lib/boinc/slots/2/PanDA_Pilot-6897663398/HITS.47556161._003008.pool.root.1 since it does not exist
[2025-11-27 03:53:26] 2025-11-27 09:52:48,330 | INFO     | number of running child processes to parent process 2562145: 1
[2025-11-27 03:53:26] 2025-11-27 09:52:48,330 | INFO     | maximum number of monitored processes: 17
[2025-11-27 03:53:26] 2025-11-27 09:52:48,330 | INFO     | aborting job monitoring since job object (job id=6897663398) has expired
[2025-11-27 03:53:26] 2025-11-27 09:52:48,330 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 03:53:26] 2025-11-27 09:52:48,330 | INFO     | will abort loop
[2025-11-27 03:53:26] 2025-11-27 09:52:48,486 | INFO     | all payload control threads have been joined
[2025-11-27 03:53:26] 2025-11-27 09:52:48,489 | INFO     | [job] retrieve thread has finished
[2025-11-27 03:53:26] 2025-11-27 09:52:48,494 | INFO     | [job] queue monitor thread has finished
[2025-11-27 03:53:26] 2025-11-27 09:52:48,512 | INFO     | [data] copytool_in thread has finished
[2025-11-27 03:53:26] 2025-11-27 09:52:48,698 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 03:53:26] 2025-11-27 09:52:48,917 | INFO     | [payload] validate_post thread has finished
[2025-11-27 03:53:26] 2025-11-27 09:52:49,044 | INFO     | [data] control thread has finished
[2025-11-27 03:53:26] 2025-11-27 09:52:49,227 | INFO     | [job] control thread has finished
[2025-11-27 03:53:26] 2025-11-27 09:52:49,335 | INFO     | [job] job monitor thread has finished
[2025-11-27 03:53:26] 2025-11-27 09:52:49,491 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 03:53:26] 2025-11-27 09:52:49,491 | INFO     | [payload] control thread has finished
[2025-11-27 03:53:26] 2025-11-27 09:52:49,494 | INFO     | [data] copytool_out thread has finished
[2025-11-27 03:53:26] 2025-11-27 09:52:49,720 | INFO     | [job] validate thread has finished
[2025-11-27 03:53:26] 2025-11-27 09:52:49,725 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 03:53:26] 2025-11-27 09:52:49,768 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 03:53:26] 2025-11-27 09:52:49,925 | INFO     | [payload] failed_post thread has finished
[2025-11-27 03:53:26] 2025-11-27 09:52:50,519 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 03:53:26] 2025-11-27 09:52:54,525 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 03:53:26] 2025-11-27 09:53:17,825 | INFO     | PID=2547389 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 03:53:26] 2025-11-27 09:53:17,826 | INFO     | .. there are 2 such processes running
[2025-11-27 03:53:26] 2025-11-27 09:53:17,826 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 03:53:26] 2025-11-27 09:53:17,826 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 03:53:26] 2025-11-27 09:53:17,826 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 03:53:26] 2025-11-27 09:53:21,350 | INFO     | [monitor] cgroup control has ended
[2025-11-27 03:53:26] 2025-11-27 09:53:21,597 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140709605906240)>', '<ExcThread(monitor, started 140709260666624)>']
[2025-11-27 03:53:26] 2025-11-27 09:53:21,846 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 03:53:26] 2025-11-27 09:53:21,846 | INFO     | [monitor] control thread has ended
[2025-11-27 03:53:26] 2025-11-27 09:53:26,623 | INFO     | all workflow threads have been joined
[2025-11-27 03:53:26] 2025-11-27 09:53:26,623 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 03:53:26] 2025-11-27 09:53:26,623 | INFO     | traces error code: 0
[2025-11-27 03:53:26] 2025-11-27 09:53:26,623 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 03:53:26] 2025-11-27 09:53:26,686 [wrapper] ==== pilot stdout END ====
[2025-11-27 03:53:26] 2025-11-27 09:53:26,687 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 03:53:26] 2025-11-27 09:53:26,688 [wrapper] pilotpid: 2547389
[2025-11-27 03:53:26] 2025-11-27 09:53:26,689 [wrapper] Pilot exit status: 0
[2025-11-27 03:53:26] 2025-11-27 09:53:26,693 [wrapper] pandaids: 6897663398
[2025-11-27 03:53:26] 2025-11-27 09:53:26,709 [wrapper] cleanup supervisor_pilot 2725316 2547390
[2025-11-27 03:53:26] 2025-11-27 09:53:26,710 [wrapper] Test setup, not cleaning
[2025-11-27 03:53:26] 2025-11-27 09:53:26,711 [wrapper] apfmon messages muted
[2025-11-27 03:53:26] 2025-11-27 09:53:26,712 [wrapper] ==== wrapper stdout END ====
[2025-11-27 03:53:26] 2025-11-27 09:53:26,713 [wrapper] ==== wrapper stderr END ====
[2025-11-27 03:53:26]  *** Error codes and diagnostics ***
[2025-11-27 03:53:26]     "exeErrorCode": 0,
[2025-11-27 03:53:26]     "exeErrorDiag": "",
[2025-11-27 03:53:26]     "pilotErrorCode": 0,
[2025-11-27 03:53:26]     "pilotErrorDiag": "",
[2025-11-27 03:53:26]  *** Listing of results directory ***
[2025-11-27 03:53:26] total 1312700
[2025-11-27 03:53:26] -rw-r--r--. 1 boinc boinc    576529 Nov 25 10:48 pilot3.tar.gz
[2025-11-27 03:53:26] -rwx------. 1 boinc boinc     36292 Nov 25 11:01 runpilot2-wrapper.sh
[2025-11-27 03:53:26] -rw-r--r--. 1 boinc boinc      5112 Nov 25 11:02 queuedata.json
[2025-11-27 03:53:26] -rw-r--r--. 1 boinc boinc       100 Nov 27 01:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 03:53:26] -rwxr-xr-x. 1 boinc boinc      7986 Nov 27 01:00 run_atlas
[2025-11-27 03:53:26] -rw-r--r--. 1 boinc boinc       105 Nov 27 01:00 job.xml
[2025-11-27 03:53:26] -rw-r--r--. 2 boinc boinc 411152399 Nov 27 01:00 EVNT.47483658._002317.pool.root.1
[2025-11-27 03:53:26] -rw-r--r--. 2 boinc boinc     15847 Nov 27 01:00 start_atlas.sh
[2025-11-27 03:53:26] drwxrwx--x. 1 boinc boinc        76 Nov 27 01:00 shared
[2025-11-27 03:53:26] -rw-r--r--. 2 boinc boinc    590106 Nov 27 01:00 input.tar.gz
[2025-11-27 03:53:26] -rw-r--r--. 1 boinc boinc     10032 Nov 27 01:00 init_data.xml
[2025-11-27 03:53:26] -rw-r--r--. 1 boinc boinc         0 Nov 27 01:00 boinc_setup_complete
[2025-11-27 03:53:26] -rw-r--r--. 1 boinc boinc         0 Nov 27 01:00 boinc_lockfile
[2025-11-27 03:53:26] -rw-r--r--. 1 boinc boinc      2786 Nov 27 01:00 pandaJob.out
[2025-11-27 03:53:26] -rw-------. 1 boinc boinc        63 Nov 27 01:00 setup.sh.local
[2025-11-27 03:53:26] -rw-------. 1 boinc boinc    991554 Nov 27 01:01 agis_schedconf.cvmfs.json
[2025-11-27 03:53:26] -rw-------. 1 boinc boinc   1516240 Nov 27 01:01 agis_ddmendpoints.agis.ALL.json
[2025-11-27 03:53:26] drwx------. 1 boinc boinc       414 Nov 27 01:01 pilot3
[2025-11-27 03:53:26] -rw-r--r--. 1 boinc boinc       532 Nov 27 03:48 boinc_task_state.xml
[2025-11-27 03:53:26] -rw-------. 1 boinc boinc        95 Nov 27 03:52 pilot_heartbeat.json
[2025-11-27 03:53:26] -rw-------. 1 boinc boinc 922262667 Nov 27 03:52 HITS.47556161._003008.pool.root.1
[2025-11-27 03:53:26] -rw-------. 1 boinc boinc      1040 Nov 27 03:52 memory_monitor_summary.json
[2025-11-27 03:53:26] -rw-------. 1 boinc boinc   1927379 Nov 27 03:52 log.47556161._003008.job.log.tgz.1
[2025-11-27 03:53:26] -rw-------. 1 boinc boinc      8611 Nov 27 03:52 heartbeat.json
[2025-11-27 03:53:26] -rw-r--r--. 1 boinc boinc      8192 Nov 27 03:53 boinc_mmap_file
[2025-11-27 03:53:26] -rw-r--r--. 1 boinc boinc        29 Nov 27 03:53 wrapper_checkpoint.txt
[2025-11-27 03:53:26] -rw-------. 1 boinc boinc      6313 Nov 27 03:53 pilotlog.txt
[2025-11-27 03:53:26] -rw-------. 1 boinc boinc   1515132 Nov 27 03:53 log.47556161._003008.job.log.1
[2025-11-27 03:53:26] -rw-------. 1 boinc boinc       353 Nov 27 03:53 output.list
[2025-11-27 03:53:26] -rw-r--r--. 1 boinc boinc       620 Nov 27 03:53 runtime_log
[2025-11-27 03:53:26] -rw-------. 1 boinc boinc   3461120 Nov 27 03:53 result.tar.gz
[2025-11-27 03:53:26] -rw-r--r--. 1 boinc boinc      9397 Nov 27 03:53 runtime_log.err
[2025-11-27 03:53:26] -rw-------. 1 boinc boinc       661 Nov 27 03:53 ePNLDmXbBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmKiJKDmdf2fEo.diag
[2025-11-27 03:53:26] -rw-r--r--. 1 boinc boinc     21264 Nov 27 03:53 stderr.txt
[2025-11-27 03:53:26] HITS file was successfully produced:
[2025-11-27 03:53:26] -rw-------. 1 boinc boinc 922262667 Nov 27 03:52 shared/HITS.pool.root.1
[2025-11-27 03:53:26]  *** Contents of shared directory: ***
[2025-11-27 03:53:26] total 1306144
[2025-11-27 03:53:26] -rw-r--r--. 2 boinc boinc 411152399 Nov 27 01:00 ATLAS.root_0
[2025-11-27 03:53:26] -rw-r--r--. 2 boinc boinc     15847 Nov 27 01:00 start_atlas.sh
[2025-11-27 03:53:26] -rw-r--r--. 2 boinc boinc    590106 Nov 27 01:00 input.tar.gz
[2025-11-27 03:53:26] -rw-------. 1 boinc boinc 922262667 Nov 27 03:52 HITS.pool.root.1
[2025-11-27 03:53:26] -rw-------. 1 boinc boinc   3461120 Nov 27 03:53 result.tar.gz
03:53:28 (2542864): run_atlas exited; CPU time 120184.081449
03:53:28 (2542864): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN