Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
01:23:34 (22442): wrapper (7.7.26015): starting
01:23:34 (22442): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 01:23:34] Arguments: --nthreads 8
[2025-11-27 01:23:34] Threads: 8
[2025-11-27 01:23:34] Checking for CVMFS
[2025-11-27 01:23:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 01:23:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 01:23:34] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 01:23:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 01:23:34] 2.11.2.0 2989 74377 82852 153350 0 1 18876704 20275201 1 130560 0 21324808 99.890 3820120 29532 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 01:23:34] CVMFS is ok
[2025-11-27 01:23:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 01:23:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 01:23:34] Further information can be found at the LHC@home message board.
[2025-11-27 01:23:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 01:23:34] Checking for apptainer binary...
[2025-11-27 01:23:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 01:23:34] Running /usr/bin/apptainer --version
[2025-11-27 01:23:34] apptainer version 1.3.2-1.el7
[2025-11-27 01:23:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 01:23:36] c-204-24.aglt2.org
[2025-11-27 01:23:36] apptainer works
[2025-11-27 01:23:36] Set ATHENA_PROC_NUMBER=8
[2025-11-27 01:23:36] Set ATHENA_CORE_NUMBER=8
[2025-11-27 01:23:36] Starting ATLAS job with PandaID=6898212818
[2025-11-27 01:23:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 14:06:17]  *** The last 200 lines of the pilot log: ***
[2025-11-27 14:06:17] 2025-11-27 19:05:40,417 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-27 14:06:17] 2025-11-27 19:05:40,421 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1679.25
[2025-11-27 14:06:17] 2025-11-27 19:05:40,422 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6898212818/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 14:06:17] 2025-11-27 19:05:40,423 | INFO     | extracted standard info from prmon json
[2025-11-27 14:06:17] 2025-11-27 19:05:40,423 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 14:06:17] 2025-11-27 19:05:40,423 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 14:06:17] 2025-11-27 19:05:40,435 | INFO     | fitting pss+swap vs Time
[2025-11-27 14:06:17] 2025-11-27 19:05:40,436 | INFO     | sum of square deviations: 130293770021.86595
[2025-11-27 14:06:17] 2025-11-27 19:05:40,448 | INFO     | sum of deviations: 739996693412.8936
[2025-11-27 14:06:17] 2025-11-27 19:05:40,448 | INFO     | mean x: 1764247482.5847797
[2025-11-27 14:06:17] 2025-11-27 19:05:40,448 | INFO     | mean y: 2869822.867823765
[2025-11-27 14:06:17] 2025-11-27 19:05:40,448 | INFO     | intersect: -10017082038.649904
[2025-11-27 14:06:17] 2025-11-27 19:05:40,449 | INFO     | chi2: 7.081045615208689
[2025-11-27 14:06:17] 2025-11-27 19:05:40,450 | INFO     | sum of square deviations: 127701929430.14523
[2025-11-27 14:06:17] 2025-11-27 19:05:40,461 | INFO     | sum of deviations: 1014465171301.1852
[2025-11-27 14:06:17] 2025-11-27 19:05:40,461 | INFO     | mean x: 1764247330.0887096
[2025-11-27 14:06:17] 2025-11-27 19:05:40,461 | INFO     | mean y: 2885974.5577956988
[2025-11-27 14:06:17] 2025-11-27 19:05:40,461 | INFO     | intersect: -14012309237.626759
[2025-11-27 14:06:17] 2025-11-27 19:05:40,462 | INFO     | chi2: 3.35896888853863
[2025-11-27 14:06:17] 2025-11-27 19:05:40,462 | INFO     | current chi2=3.35896888853863 (change=52.5639422329913 %)
[2025-11-27 14:06:17] 2025-11-27 19:05:40,463 | INFO     | sum of square deviations: 125144694138.40027
[2025-11-27 14:06:17] 2025-11-27 19:05:40,474 | INFO     | sum of deviations: 1130851237406.6519
[2025-11-27 14:06:17] 2025-11-27 19:05:40,474 | INFO     | mean x: 1764247177.5926929
[2025-11-27 14:06:17] 2025-11-27 19:05:40,474 | INFO     | mean y: 2892913.1948579163
[2025-11-27 14:06:17] 2025-11-27 19:05:40,475 | INFO     | intersect: -15939461795.551033
[2025-11-27 14:06:17] 2025-11-27 19:05:40,475 | INFO     | chi2: 2.5788198195446657
[2025-11-27 14:06:17] 2025-11-27 19:05:40,476 | INFO     | current chi2=2.5788198195446657 (change=23.225849803371656 %)
[2025-11-27 14:06:17] 2025-11-27 19:05:40,476 | INFO     | right removable region: 738
[2025-11-27 14:06:17] 2025-11-27 19:05:40,476 | INFO     | monitor loop #3367: job 0:6898212818 is in state 'finished'
[2025-11-27 14:06:17] 2025-11-27 19:05:40,477 | INFO     | sum of square deviations: 127701662250.1452
[2025-11-27 14:06:17] 2025-11-27 19:05:40,477 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 14:06:17] 2025-11-27 19:05:40,490 | INFO     | sum of deviations: 530577218534.8546
[2025-11-27 14:06:17] 2025-11-27 19:05:40,490 | INFO     | mean x: 1764247635.0887096
[2025-11-27 14:06:17] 2025-11-27 19:05:40,490 | INFO     | mean y: 2882123.0779569894
[2025-11-27 14:06:17] 2025-11-27 19:05:40,490 | INFO     | intersect: -7327246447.985325
[2025-11-27 14:06:17] 2025-11-27 19:05:40,491 | INFO     | chi2: 4.711051422910695
[2025-11-27 14:06:17] 2025-11-27 19:05:40,491 | INFO     | current chi2=4.711051422910695 (change=33.469551265249784 %)
[2025-11-27 14:06:17] 2025-11-27 19:05:40,492 | INFO     | sum of square deviations: 125144205040.58449
[2025-11-27 14:06:17] 2025-11-27 19:05:40,503 | INFO     | sum of deviations: 486254447744.1274
[2025-11-27 14:06:17] 2025-11-27 19:05:40,503 | INFO     | mean x: 1764247787.5913396
[2025-11-27 14:06:17] 2025-11-27 19:05:40,504 | INFO     | mean y: 2884764.4573748307
[2025-11-27 14:06:17] 2025-11-27 19:05:40,504 | INFO     | intersect: -6852193609.813456
[2025-11-27 14:06:17] 2025-11-27 19:05:40,505 | INFO     | chi2: 4.662962081925198
[2025-11-27 14:06:17] 2025-11-27 19:05:40,505 | INFO     | current chi2=4.662962081925198 (change=1.020777246277349 %)
[2025-11-27 14:06:17] 2025-11-27 19:05:40,505 | INFO     | left removable region: 20
[2025-11-27 14:06:17] 2025-11-27 19:05:40,506 | INFO     | sum of square deviations: 114776233863.97903
[2025-11-27 14:06:17] 2025-11-27 19:05:40,516 | INFO     | sum of deviations: 832812033291.227
[2025-11-27 14:06:17] 2025-11-27 19:05:40,516 | INFO     | mean x: 1764247757.0988858
[2025-11-27 14:06:17] 2025-11-27 19:05:40,517 | INFO     | mean y: 2911709.658774373
[2025-11-27 14:06:17] 2025-11-27 19:05:40,517 | INFO     | intersect: -12798403618.044497
[2025-11-27 14:06:17] 2025-11-27 19:05:40,517 | INFO     | chi2: 0.10001115397782466
[2025-11-27 14:06:17] 2025-11-27 19:05:40,518 | INFO     | current memory leak: 7.26 B/s (using 718 data points, chi2=0.10)
[2025-11-27 14:06:17] 2025-11-27 19:05:40,518 | INFO     | could have reported an average CPU frequency of 2165 MHz (29 samples)
[2025-11-27 14:06:17] 2025-11-27 19:05:40,518 | INFO     | ..............................
[2025-11-27 14:06:17] 2025-11-27 19:05:40,518 | INFO     | . Timing measurements:
[2025-11-27 14:06:17] 2025-11-27 19:05:40,519 | INFO     | . get job = 0 s
[2025-11-27 14:06:17] 2025-11-27 19:05:40,519 | INFO     | . initial setup = 2 s
[2025-11-27 14:06:17] 2025-11-27 19:05:40,519 | INFO     | . payload setup = 9 s
[2025-11-27 14:06:17] 2025-11-27 19:05:40,519 | INFO     | . stage-in = 0 s
[2025-11-27 14:06:17] 2025-11-27 19:05:40,519 | INFO     | . payload execution = 45660 s
[2025-11-27 14:06:17] 2025-11-27 19:05:40,519 | INFO     | . stage-out = 3 s
[2025-11-27 14:06:17] 2025-11-27 19:05:40,519 | INFO     | . log creation = 0 s
[2025-11-27 14:06:17] 2025-11-27 19:05:40,519 | INFO     | ..............................
[2025-11-27 14:06:17] 2025-11-27 19:05:40,755 | INFO     | 
[2025-11-27 14:06:17] 2025-11-27 19:05:40,755 | INFO     | job summary report
[2025-11-27 14:06:17] 2025-11-27 19:05:40,755 | INFO     | --------------------------------------------------
[2025-11-27 14:06:17] 2025-11-27 19:05:40,755 | INFO     | PanDA job id: 6898212818
[2025-11-27 14:06:17] 2025-11-27 19:05:40,755 | INFO     | task id: 47556161
[2025-11-27 14:06:17] 2025-11-27 19:05:40,756 | INFO     | errors: (none)
[2025-11-27 14:06:17] 2025-11-27 19:05:40,756 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 14:06:17] 2025-11-27 19:05:40,756 | INFO     | pilot state: finished 
[2025-11-27 14:06:17] 2025-11-27 19:05:40,756 | INFO     | transexitcode: 0
[2025-11-27 14:06:17] 2025-11-27 19:05:40,756 | INFO     | exeerrorcode: 0
[2025-11-27 14:06:17] 2025-11-27 19:05:40,757 | INFO     | exeerrordiag: 
[2025-11-27 14:06:17] 2025-11-27 19:05:40,757 | INFO     | exitcode: 0
[2025-11-27 14:06:17] 2025-11-27 19:05:40,757 | INFO     | exitmsg: OK
[2025-11-27 14:06:17] 2025-11-27 19:05:40,757 | INFO     | cpuconsumptiontime: 352980 s
[2025-11-27 14:06:17] 2025-11-27 19:05:40,757 | INFO     | nevents: 1000
[2025-11-27 14:06:17] 2025-11-27 19:05:40,757 | INFO     | neventsw: 0
[2025-11-27 14:06:17] 2025-11-27 19:05:40,758 | INFO     | pid: 32621
[2025-11-27 14:06:17] 2025-11-27 19:05:40,758 | INFO     | pgrp: 32621
[2025-11-27 14:06:17] 2025-11-27 19:05:40,758 | INFO     | corecount: 8
[2025-11-27 14:06:17] 2025-11-27 19:05:40,758 | INFO     | event service: False
[2025-11-27 14:06:17] 2025-11-27 19:05:40,758 | INFO     | sizes: {0: 2284264, 6: 2284526, 11: 2284554, 45673: 2330756, 45678: 2339750, 45680: 2339806, 45688: 2340180}
[2025-11-27 14:06:17] 2025-11-27 19:05:40,758 | INFO     | --------------------------------------------------
[2025-11-27 14:06:17] 2025-11-27 19:05:40,759 | INFO     | 
[2025-11-27 14:06:17] 2025-11-27 19:05:40,759 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-27 14:06:17] 2025-11-27 19:05:40,790 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 14:06:17] 2025-11-27 19:05:40,790 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 14:06:17] 2025-11-27 19:05:40,790 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 14:06:17] 2025-11-27 19:05:40,791 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 14:06:17] 2025-11-27 19:05:40,791 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 14:06:17] 2025-11-27 19:05:40,791 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 14:06:17] 2025-11-27 19:05:40,791 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 14:06:17] 2025-11-27 19:05:40,792 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 14:06:17] 2025-11-27 19:05:40,792 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 14:06:17] 2025-11-27 19:05:40,792 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 14:06:17] 2025-11-27 19:05:40,792 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 14:06:17] 2025-11-27 19:05:40,793 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 14:06:17] 2025-11-27 19:05:40,793 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 14:06:17] 2025-11-27 19:05:40,793 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 14:06:17] 2025-11-27 19:05:40,793 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 14:06:17] 2025-11-27 19:05:40,794 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 14:06:17] 2025-11-27 19:05:40,794 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 14:06:17] 2025-11-27 19:05:40,794 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 14:06:17] 2025-11-27 19:05:40,794 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 14:06:17] 2025-11-27 19:05:40,795 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 14:06:17] 2025-11-27 19:05:40,795 | INFO     | job 6898212818 has completed (purged errors)
[2025-11-27 14:06:17] 2025-11-27 19:05:40,795 | INFO     | overall cleanup function is called
[2025-11-27 14:06:17] 2025-11-27 19:05:41,808 | INFO     | --- collectZombieJob: --- 10, [32621]
[2025-11-27 14:06:17] 2025-11-27 19:05:41,808 | INFO     | zombie collector waiting for pid 32621
[2025-11-27 14:06:17] 2025-11-27 19:05:41,808 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 14:06:17] 2025-11-27 19:05:41,808 | INFO     | collected zombie processes
[2025-11-27 14:06:17] 2025-11-27 19:05:41,809 | INFO     | will attempt to kill all subprocesses of pid=32621
[2025-11-27 14:06:17] 2025-11-27 19:05:41,903 | INFO     | process IDs to be killed: [32621] (in reverse order)
[2025-11-27 14:06:17] 2025-11-27 19:05:41,964 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 14:06:17] 2025-11-27 19:05:41,965 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 14:06:17] 2025-11-27 19:05:41,971 | INFO     | did not find any defunct processes belonging to 32621
[2025-11-27 14:06:17] 2025-11-27 19:05:41,975 | INFO     | did not find any defunct processes belonging to 32621
[2025-11-27 14:06:17] 2025-11-27 19:05:41,977 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 14:06:17] 2025-11-27 19:05:41,978 | INFO     | ready for new job
[2025-11-27 14:06:17] 2025-11-27 19:05:41,978 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 14:06:17] 2025-11-27 19:05:41,982 | INFO     | ***************************************
[2025-11-27 14:06:17] 2025-11-27 19:05:41,982 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 14:06:17] 2025-11-27 19:05:41,982 | INFO     | ***************************************
[2025-11-27 14:06:17] 2025-11-27 19:05:41,982 | INFO     | 
[2025-11-27 14:06:17] 2025-11-27 19:05:41,983 | INFO     | architecture information:
[2025-11-27 14:06:17] 2025-11-27 19:05:41,984 | INFO     | executing command: cat /etc/os-release
[2025-11-27 14:06:17] 2025-11-27 19:05:42,004 | INFO     | cat /etc/os-release:
[2025-11-27 14:06:17] NAME="CentOS Linux"
[2025-11-27 14:06:17] VERSION="7 (Core)"
[2025-11-27 14:06:17] ID="centos"
[2025-11-27 14:06:17] ID_LIKE="rhel fedora"
[2025-11-27 14:06:17] VERSION_ID="7"
[2025-11-27 14:06:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 14:06:17] ANSI_COLOR="0;31"
[2025-11-27 14:06:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 14:06:17] HOME_URL="https://www.centos.org/"
[2025-11-27 14:06:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 14:06:17] 
[2025-11-27 14:06:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 14:06:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 14:06:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 14:06:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 14:06:17] 
[2025-11-27 14:06:17] 2025-11-27 19:05:42,005 | INFO     | ***************************************
[2025-11-27 14:06:17] 2025-11-27 19:05:42,507 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-27 14:06:17] 2025-11-27 19:05:42,529 | INFO     | sufficient remaining disk space (17584619520 B)
[2025-11-27 14:06:17] 2025-11-27 19:05:42,529 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 14:06:17] 2025-11-27 19:05:42,530 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 14:06:17] 2025-11-27 19:05:42,530 | INFO     | update_server=False
[2025-11-27 14:06:17] 2025-11-27 19:05:42,530 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 14:06:17] 2025-11-27 19:05:42,531 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 14:06:17] 2025-11-27 19:05:42,531 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 14:06:17] 2025-11-27 19:05:42,725 | INFO     | all payload control threads have been joined
[2025-11-27 14:06:17] 2025-11-27 19:05:42,752 | INFO     | all job control threads have been joined
[2025-11-27 14:06:17] 2025-11-27 19:05:42,857 | INFO     | all data control threads have been joined
[2025-11-27 14:06:17] 2025-11-27 19:05:42,986 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 14:06:17] 2025-11-27 19:05:42,986 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 14:06:17] 2025-11-27 19:05:42,987 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 14:06:17] 2025-11-27 19:05:42,987 | INFO     | will abort loop
[2025-11-27 14:06:17] 2025-11-27 19:05:43,492 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 14:06:17] 2025-11-27 19:05:43,532 | INFO     | [job] queue monitor thread has finished
[2025-11-27 14:06:17] 2025-11-27 19:05:43,535 | INFO     | [job] retrieve thread has finished
[2025-11-27 14:06:17] 2025-11-27 19:05:43,567 | INFO     | [job] validate thread has finished
[2025-11-27 14:06:17] 2025-11-27 19:05:43,657 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 14:06:17] 2025-11-27 19:05:43,731 | INFO     | [payload] control thread has finished
[2025-11-27 14:06:17] 2025-11-27 19:05:43,758 | INFO     | [job] control thread has finished
[2025-11-27 14:06:17] 2025-11-27 19:05:43,770 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 14:06:17] 2025-11-27 19:05:43,853 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 14:06:17] 2025-11-27 19:05:43,860 | INFO     | [data] control thread has finished
[2025-11-27 14:06:17] 2025-11-27 19:05:43,992 | INFO     | [job] job monitor thread has finished
[2025-11-27 14:06:17] 2025-11-27 19:05:44,256 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 14:06:17] 2025-11-27 19:05:44,340 | INFO     | [data] copytool_in thread has finished
[2025-11-27 14:06:17] 2025-11-27 19:05:44,417 | INFO     | [payload] failed_post thread has finished
[2025-11-27 14:06:17] 2025-11-27 19:05:44,537 | INFO     | [data] copytool_out thread has finished
[2025-11-27 14:06:17] 2025-11-27 19:05:45,021 | INFO     | [payload] validate_post thread has finished
[2025-11-27 14:06:17] 2025-11-27 19:05:47,499 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 14:06:17] 2025-11-27 19:06:10,648 | INFO     | [monitor] cgroup control has ended
[2025-11-27 14:06:17] 2025-11-27 19:06:11,919 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140472083117888)>', '<ExcThread(monitor, started 140471057770240)>']
[2025-11-27 14:06:17] 2025-11-27 19:06:12,457 | INFO     | PID=26121 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 14:06:17] 2025-11-27 19:06:12,458 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 14:06:17] 2025-11-27 19:06:12,458 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 14:06:17] 2025-11-27 19:06:12,458 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 14:06:17] 2025-11-27 19:06:12,458 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 14:06:17] 2025-11-27 19:06:12,458 | INFO     | [monitor] control thread has ended
[2025-11-27 14:06:17] 2025-11-27 19:06:16,947 | INFO     | all workflow threads have been joined
[2025-11-27 14:06:17] 2025-11-27 19:06:16,948 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 14:06:17] 2025-11-27 19:06:16,949 | INFO     | traces error code: 0
[2025-11-27 14:06:17] 2025-11-27 19:06:16,949 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 14:06:17] 2025-11-27 19:06:17,067 [wrapper] ==== pilot stdout END ====
[2025-11-27 14:06:17] 2025-11-27 19:06:17,072 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 14:06:17] 2025-11-27 19:06:17,077 [wrapper] pilotpid: 26121
[2025-11-27 14:06:17] 2025-11-27 19:06:17,081 [wrapper] Pilot exit status: 0
[2025-11-27 14:06:17] 2025-11-27 19:06:17,100 [wrapper] pandaids: 6898212818
[2025-11-27 14:06:17] 2025-11-27 19:06:17,148 [wrapper] cleanup supervisor_pilot  7077 26122
[2025-11-27 14:06:17] 2025-11-27 19:06:17,153 [wrapper] Test setup, not cleaning
[2025-11-27 14:06:17] 2025-11-27 19:06:17,158 [wrapper] apfmon messages muted
[2025-11-27 14:06:17] 2025-11-27 19:06:17,164 [wrapper] ==== wrapper stdout END ====
[2025-11-27 14:06:17] 2025-11-27 19:06:17,168 [wrapper] ==== wrapper stderr END ====
[2025-11-27 14:06:17]  *** Error codes and diagnostics ***
[2025-11-27 14:06:17]     "exeErrorCode": 0,
[2025-11-27 14:06:17]     "exeErrorDiag": "",
[2025-11-27 14:06:17]     "pilotErrorCode": 0,
[2025-11-27 14:06:17]     "pilotErrorDiag": "",
[2025-11-27 14:06:17]  *** Listing of results directory ***
[2025-11-27 14:06:17] total 1322272
[2025-11-27 14:06:17] -rw-r--r-- 1 boincer umatlas    576529 Nov 25 22:33 pilot3.tar.gz
[2025-11-27 14:06:17] -rw-r--r-- 1 boincer umatlas      5112 Nov 25 23:21 queuedata.json
[2025-11-27 14:06:17] -rwx------ 1 boincer umatlas     36292 Nov 25 23:25 runpilot2-wrapper.sh
[2025-11-27 14:06:17] -rw-r--r-- 1 boincer umatlas       100 Nov 27 01:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 14:06:17] -rwxr-xr-x 1 boincer umatlas      7986 Nov 27 01:23 run_atlas
[2025-11-27 14:06:17] -rw-r--r-- 1 boincer umatlas       105 Nov 27 01:23 job.xml
[2025-11-27 14:06:17] -rw-r--r-- 2 boincer umatlas 413105388 Nov 27 01:23 EVNT.47483658._002485.pool.root.1
[2025-11-27 14:06:17] -rw-r--r-- 2 boincer umatlas     15847 Nov 27 01:23 start_atlas.sh
[2025-11-27 14:06:17] drwxrwx--x 2 boincer umatlas      4096 Nov 27 01:23 shared
[2025-11-27 14:06:17] -rw-r--r-- 2 boincer umatlas    590107 Nov 27 01:23 input.tar.gz
[2025-11-27 14:06:17] -rw-r--r-- 1 boincer umatlas         0 Nov 27 01:23 boinc_lockfile
[2025-11-27 14:06:17] -rw-r--r-- 1 boincer umatlas      2785 Nov 27 01:23 pandaJob.out
[2025-11-27 14:06:17] -rw------- 1 boincer umatlas        57 Nov 27 01:23 setup.sh.local
[2025-11-27 14:06:17] -rw------- 1 boincer umatlas    991554 Nov 27 01:23 agis_schedconf.cvmfs.json
[2025-11-27 14:06:17] drwx------ 5 boincer umatlas      4096 Nov 27 01:23 pilot3
[2025-11-27 14:06:17] -rw-r--r-- 1 boincer umatlas       533 Nov 27 13:53 boinc_task_state.xml
[2025-11-27 14:06:17] -rw------- 1 boincer umatlas 920399908 Nov 27 14:04 HITS.47556161._004673.pool.root.1
[2025-11-27 14:06:17] -rw-r--r-- 1 boincer umatlas      5913 Nov 27 14:04 init_data.xml
[2025-11-27 14:06:17] -rw------- 1 boincer umatlas      1062 Nov 27 14:05 memory_monitor_summary.json
[2025-11-27 14:06:17] -rw------- 1 boincer umatlas   1516240 Nov 27 14:05 agis_ddmendpoints.agis.ALL.json
[2025-11-27 14:06:17] -rw------- 1 boincer umatlas   1991754 Nov 27 14:05 log.47556161._004673.job.log.tgz.1
[2025-11-27 14:06:17] -rw------- 1 boincer umatlas      8671 Nov 27 14:05 heartbeat.json
[2025-11-27 14:06:17] -rw-r--r-- 1 boincer umatlas      8192 Nov 27 14:06 boinc_mmap_file
[2025-11-27 14:06:17] -rw-r--r-- 1 boincer umatlas        29 Nov 27 14:06 wrapper_checkpoint.txt
[2025-11-27 14:06:17] -rw------- 1 boincer umatlas        95 Nov 27 14:06 pilot_heartbeat.json
[2025-11-27 14:06:17] -rw------- 1 boincer umatlas      4932 Nov 27 14:06 pilotlog.txt
[2025-11-27 14:06:17] -rw------- 1 boincer umatlas   6298037 Nov 27 14:06 log.47556161._004673.job.log.1
[2025-11-27 14:06:17] -rw------- 1 boincer umatlas       353 Nov 27 14:06 output.list
[2025-11-27 14:06:17] -rw-r--r-- 1 boincer umatlas       620 Nov 27 14:06 runtime_log
[2025-11-27 14:06:17] -rw------- 1 boincer umatlas   8304640 Nov 27 14:06 result.tar.gz
[2025-11-27 14:06:17] -rw-r--r-- 1 boincer umatlas      9343 Nov 27 14:06 runtime_log.err
[2025-11-27 14:06:17] -rw------- 1 boincer umatlas       668 Nov 27 14:06 ACzKDmyGMi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmbvJKDm9OD81m.diag
[2025-11-27 14:06:17] -rw-r--r-- 1 boincer umatlas     21289 Nov 27 14:06 stderr.txt
[2025-11-27 14:06:17] HITS file was successfully produced:
[2025-11-27 14:06:17] -rw------- 1 boincer umatlas 920399908 Nov 27 14:04 shared/HITS.pool.root.1
[2025-11-27 14:06:17]  *** Contents of shared directory: ***
[2025-11-27 14:06:17] total 1310972
[2025-11-27 14:06:17] -rw-r--r-- 2 boincer umatlas 413105388 Nov 27 01:23 ATLAS.root_0
[2025-11-27 14:06:17] -rw-r--r-- 2 boincer umatlas     15847 Nov 27 01:23 start_atlas.sh
[2025-11-27 14:06:17] -rw-r--r-- 2 boincer umatlas    590107 Nov 27 01:23 input.tar.gz
[2025-11-27 14:06:17] -rw------- 1 boincer umatlas 920399908 Nov 27 14:04 HITS.pool.root.1
[2025-11-27 14:06:17] -rw------- 1 boincer umatlas   8304640 Nov 27 14:06 result.tar.gz
14:06:19 (22442): run_atlas exited; CPU time 349114.735067
14:06:19 (22442): called boinc_finish(0)

</stderr_txt>
]]>

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