Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
01:21:30 (4044122): wrapper (7.7.26015): starting
01:21:30 (4044122): wrapper: running run_atlas (--nthreads 10)
[2025-11-27 01:21:30] Arguments: --nthreads 10
[2025-11-27 01:21:30] Threads: 10
[2025-11-27 01:21:30] Checking for CVMFS
[2025-11-27 01:21:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 01:21:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 01:21:30] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 01:21:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 01:21:30] 2.13.3.0 11314 31124 221748 153350 0 135 22528305 32935937 65544 16776704 0 251580667 99.661 238630365 33578 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 01:21:30] CVMFS is ok
[2025-11-27 01:21:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 01:21:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 01:21:30] Further information can be found at the LHC@home message board.
[2025-11-27 01:21:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 01:21:30] Checking for apptainer binary...
[2025-11-27 01:21:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 01:21:30] Running /usr/bin/apptainer --version
[2025-11-27 01:21:30] apptainer version 1.4.4-1.el9
[2025-11-27 01:21:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 01:21:30] c7-2-10.aglt2.org
[2025-11-27 01:21:30] apptainer works
[2025-11-27 01:21:30] Set ATHENA_PROC_NUMBER=10
[2025-11-27 01:21:30] Set ATHENA_CORE_NUMBER=10
[2025-11-27 01:21:30] Starting ATLAS job with PandaID=6898214240
[2025-11-27 01:21:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 14:53:40]  *** The last 200 lines of the pilot log: ***
[2025-11-27 14:53:40] 2025-11-27 19:53:00,780 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 14:53:40] 2025-11-27 19:53:01,563 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 14:53:40] 2025-11-27 19:53:01,589 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3375.5912604166674
[2025-11-27 14:53:40] 2025-11-27 19:53:01,604 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6898214240/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 14:53:40] 2025-11-27 19:53:01,634 | INFO     | extracted standard info from prmon json
[2025-11-27 14:53:40] 2025-11-27 19:53:01,634 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 14:53:40] 2025-11-27 19:53:01,635 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 14:53:40] 2025-11-27 19:53:01,677 | INFO     | fitting pss+swap vs Time
[2025-11-27 14:53:40] 2025-11-27 19:53:01,683 | INFO     | sum of square deviations: 157577043141.43866
[2025-11-27 14:53:40] 2025-11-27 19:53:01,713 | INFO     | sum of deviations: 1027645823631.3323
[2025-11-27 14:53:40] 2025-11-27 19:53:01,714 | INFO     | mean x: 1764248841.8245614
[2025-11-27 14:53:40] 2025-11-27 19:53:01,714 | INFO     | mean y: 3275763.595238095
[2025-11-27 14:53:40] 2025-11-27 19:53:01,714 | INFO     | intersect: -11502352962.538965
[2025-11-27 14:53:40] 2025-11-27 19:53:01,719 | INFO     | chi2: 8.215920705006742
[2025-11-27 14:53:40] 2025-11-27 19:53:01,720 | INFO     | sum of square deviations: 154633952190.11087
[2025-11-27 14:53:40] 2025-11-27 19:53:01,776 | INFO     | sum of deviations: 1354479631509.309
[2025-11-27 14:53:40] 2025-11-27 19:53:01,776 | INFO     | mean x: 1764248689.332913
[2025-11-27 14:53:40] 2025-11-27 19:53:01,776 | INFO     | mean y: 3292697.923076923
[2025-11-27 14:53:40] 2025-11-27 19:53:01,776 | INFO     | intersect: -15450227572.195503
[2025-11-27 14:53:40] 2025-11-27 19:53:01,777 | INFO     | chi2: 4.600229864091722
[2025-11-27 14:53:40] 2025-11-27 19:53:01,777 | INFO     | current chi2=4.600229864091722 (change=44.008346364779726 %)
[2025-11-27 14:53:40] 2025-11-27 19:53:01,778 | INFO     | sum of square deviations: 151727745651.17084
[2025-11-27 14:53:40] 2025-11-27 19:53:01,813 | INFO     | sum of deviations: 1589045526065.4707
[2025-11-27 14:53:40] 2025-11-27 19:53:01,814 | INFO     | mean x: 1764248536.8413706
[2025-11-27 14:53:40] 2025-11-27 19:53:01,814 | INFO     | mean y: 3304992.2677664976
[2025-11-27 14:53:40] 2025-11-27 19:53:01,814 | INFO     | intersect: -18473679769.508396
[2025-11-27 14:53:40] 2025-11-27 19:53:01,815 | INFO     | chi2: 2.4796886916342804
[2025-11-27 14:53:40] 2025-11-27 19:53:01,815 | INFO     | current chi2=2.4796886916342804 (change=46.096417681426566 %)
[2025-11-27 14:53:40] 2025-11-27 19:53:01,815 | INFO     | sum of square deviations: 148857950750.58493
[2025-11-27 14:53:40] 2025-11-27 19:53:01,835 | INFO     | sum of deviations: 1641642027065.396
[2025-11-27 14:53:40] 2025-11-27 19:53:01,835 | INFO     | mean x: 1764248384.3435504
[2025-11-27 14:53:40] 2025-11-27 19:53:01,835 | INFO     | mean y: 3307783.950191571
[2025-11-27 14:53:40] 2025-11-27 19:53:01,835 | INFO     | intersect: -19453256540.070072
[2025-11-27 14:53:40] 2025-11-27 19:53:01,836 | INFO     | chi2: 2.2850254038324604
[2025-11-27 14:53:40] 2025-11-27 19:53:01,836 | INFO     | current chi2=2.2850254038324604 (change=7.850311551548991 %)
[2025-11-27 14:53:40] 2025-11-27 19:53:01,836 | INFO     | right removable region: 782
[2025-11-27 14:53:40] 2025-11-27 19:53:01,836 | INFO     | sum of square deviations: 154633404413.43964
[2025-11-27 14:53:40] 2025-11-27 19:53:01,849 | INFO     | sum of deviations: 801923025614.0156
[2025-11-27 14:53:40] 2025-11-27 19:53:01,849 | INFO     | mean x: 1764248994.330391
[2025-11-27 14:53:40] 2025-11-27 19:53:01,849 | INFO     | mean y: 3287435.0075662043
[2025-11-27 14:53:40] 2025-11-27 19:53:01,849 | INFO     | intersect: -9146041565.647532
[2025-11-27 14:53:40] 2025-11-27 19:53:01,850 | INFO     | chi2: 6.213405800100679
[2025-11-27 14:53:40] 2025-11-27 19:53:01,850 | INFO     | current chi2=6.213405800100679 (change=24.373590943809134 %)
[2025-11-27 14:53:40] 2025-11-27 19:53:01,850 | INFO     | left removable region: 10
[2025-11-27 14:53:40] 2025-11-27 19:53:01,851 | INFO     | sum of square deviations: 142671797577.16602
[2025-11-27 14:53:40] 2025-11-27 19:53:01,989 | INFO     | sum of deviations: 1351392610533.5854
[2025-11-27 14:53:40] 2025-11-27 19:53:01,989 | INFO     | mean x: 1764248658.8523316
[2025-11-27 14:53:40] 2025-11-27 19:53:01,989 | INFO     | mean y: 3323768.1191709843
[2025-11-27 14:53:40] 2025-11-27 19:53:01,990 | INFO     | intersect: -16707705609.829935
[2025-11-27 14:53:40] 2025-11-27 19:53:01,990 | INFO     | chi2: 0.16109881695798295
[2025-11-27 14:53:40] 2025-11-27 19:53:01,990 | INFO     | current memory leak: 9.47 B/s (using 772 data points, chi2=0.16)
[2025-11-27 14:53:40] 2025-11-27 19:53:01,991 | INFO     | could have reported an average CPU frequency of 3403 MHz (30 samples)
[2025-11-27 14:53:40] 2025-11-27 19:53:02,003 | INFO     | ..............................
[2025-11-27 14:53:40] 2025-11-27 19:53:02,004 | INFO     | . Timing measurements:
[2025-11-27 14:53:40] 2025-11-27 19:53:02,004 | INFO     | . get job = 0 s
[2025-11-27 14:53:40] 2025-11-27 19:53:02,004 | INFO     | . initial setup = 2 s
[2025-11-27 14:53:40] 2025-11-27 19:53:02,004 | INFO     | . payload setup = 6 s
[2025-11-27 14:53:40] 2025-11-27 19:53:02,004 | INFO     | . stage-in = 0 s
[2025-11-27 14:53:40] 2025-11-27 19:53:02,004 | INFO     | . payload execution = 48631 s
[2025-11-27 14:53:40] 2025-11-27 19:53:02,004 | INFO     | . stage-out = 5 s
[2025-11-27 14:53:40] 2025-11-27 19:53:02,004 | INFO     | . log creation = 0 s
[2025-11-27 14:53:40] 2025-11-27 19:53:02,004 | INFO     | ..............................
[2025-11-27 14:53:40] 2025-11-27 19:53:02,710 | INFO     | 
[2025-11-27 14:53:40] 2025-11-27 19:53:02,712 | INFO     | job summary report
[2025-11-27 14:53:40] 2025-11-27 19:53:02,712 | INFO     | --------------------------------------------------
[2025-11-27 14:53:40] 2025-11-27 19:53:02,712 | INFO     | PanDA job id: 6898214240
[2025-11-27 14:53:40] 2025-11-27 19:53:02,713 | INFO     | task id: 47556161
[2025-11-27 14:53:40] 2025-11-27 19:53:02,713 | INFO     | errors: (none)
[2025-11-27 14:53:40] 2025-11-27 19:53:02,713 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 14:53:40] 2025-11-27 19:53:02,713 | INFO     | pilot state: finished 
[2025-11-27 14:53:40] 2025-11-27 19:53:02,713 | INFO     | transexitcode: 0
[2025-11-27 14:53:40] 2025-11-27 19:53:02,713 | INFO     | exeerrorcode: 0
[2025-11-27 14:53:40] 2025-11-27 19:53:02,713 | INFO     | exeerrordiag: 
[2025-11-27 14:53:40] 2025-11-27 19:53:02,713 | INFO     | exitcode: 0
[2025-11-27 14:53:40] 2025-11-27 19:53:02,713 | INFO     | exitmsg: OK
[2025-11-27 14:53:40] 2025-11-27 19:53:02,713 | INFO     | cpuconsumptiontime: 186956 s
[2025-11-27 14:53:40] 2025-11-27 19:53:02,713 | INFO     | nevents: 1000
[2025-11-27 14:53:40] 2025-11-27 19:53:02,713 | INFO     | neventsw: 0
[2025-11-27 14:53:40] 2025-11-27 19:53:02,713 | INFO     | pid: 4059164
[2025-11-27 14:53:40] 2025-11-27 19:53:02,713 | INFO     | pgrp: 4059164
[2025-11-27 14:53:40] 2025-11-27 19:53:02,713 | INFO     | corecount: 10
[2025-11-27 14:53:40] 2025-11-27 19:53:02,713 | INFO     | event service: False
[2025-11-27 14:53:40] 2025-11-27 19:53:02,713 | INFO     | sizes: {0: 2284031, 1: 2284286, 6: 2284548, 11: 2284576, 48642: 2331510, 48649: 2340688, 48664: 2340878}
[2025-11-27 14:53:40] 2025-11-27 19:53:02,713 | INFO     | --------------------------------------------------
[2025-11-27 14:53:40] 2025-11-27 19:53:02,713 | INFO     | 
[2025-11-27 14:53:40] 2025-11-27 19:53:02,714 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-27 14:53:40] 2025-11-27 19:53:02,746 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 14:53:40] 2025-11-27 19:53:02,747 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 14:53:40] 2025-11-27 19:53:02,747 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 14:53:40] 2025-11-27 19:53:02,747 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 14:53:40] 2025-11-27 19:53:02,747 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 14:53:40] 2025-11-27 19:53:02,747 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 14:53:40] 2025-11-27 19:53:02,747 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 14:53:40] 2025-11-27 19:53:02,747 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 14:53:40] 2025-11-27 19:53:02,747 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 14:53:40] 2025-11-27 19:53:02,747 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 14:53:40] 2025-11-27 19:53:02,747 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 14:53:40] 2025-11-27 19:53:02,747 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 14:53:40] 2025-11-27 19:53:02,747 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 14:53:40] 2025-11-27 19:53:02,747 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 14:53:40] 2025-11-27 19:53:02,748 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 14:53:40] 2025-11-27 19:53:02,748 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 14:53:40] 2025-11-27 19:53:02,748 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 14:53:40] 2025-11-27 19:53:02,748 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 14:53:40] 2025-11-27 19:53:02,748 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 14:53:40] 2025-11-27 19:53:02,748 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 14:53:40] 2025-11-27 19:53:02,748 | INFO     | job 6898214240 has completed (purged errors)
[2025-11-27 14:53:40] 2025-11-27 19:53:02,748 | INFO     | overall cleanup function is called
[2025-11-27 14:53:40] 2025-11-27 19:53:03,805 | INFO     | --- collectZombieJob: --- 10, [4059164]
[2025-11-27 14:53:40] 2025-11-27 19:53:03,805 | INFO     | zombie collector waiting for pid 4059164
[2025-11-27 14:53:40] 2025-11-27 19:53:03,805 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 14:53:40] 2025-11-27 19:53:03,806 | INFO     | collected zombie processes
[2025-11-27 14:53:40] 2025-11-27 19:53:03,806 | INFO     | will attempt to kill all subprocesses of pid=4059164
[2025-11-27 14:53:40] 2025-11-27 19:53:05,993 | INFO     | PID=4048846 has CPU usage=17.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-27 14:53:40] 2025-11-27 19:53:05,993 | INFO     | .. there are 96 such processes running
[2025-11-27 14:53:40] 2025-11-27 19:53:06,054 | INFO     | process IDs to be killed: [4059164] (in reverse order)
[2025-11-27 14:53:40] 2025-11-27 19:53:06,317 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 14:53:40] 2025-11-27 19:53:06,317 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 14:53:40] 2025-11-27 19:53:06,363 | INFO     | did not find any defunct processes belonging to 4059164
[2025-11-27 14:53:40] 2025-11-27 19:53:06,398 | INFO     | did not find any defunct processes belonging to 4059164
[2025-11-27 14:53:40] 2025-11-27 19:53:06,399 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 14:53:40] 2025-11-27 19:53:06,399 | INFO     | ready for new job
[2025-11-27 14:53:40] 2025-11-27 19:53:06,399 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 14:53:40] 2025-11-27 19:53:06,402 | INFO     | ***************************************
[2025-11-27 14:53:40] 2025-11-27 19:53:06,403 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 14:53:40] 2025-11-27 19:53:06,403 | INFO     | ***************************************
[2025-11-27 14:53:40] 2025-11-27 19:53:06,403 | INFO     | 
[2025-11-27 14:53:40] 2025-11-27 19:53:06,407 | INFO     | architecture information:
[2025-11-27 14:53:40] 2025-11-27 19:53:06,408 | INFO     | executing command: cat /etc/os-release
[2025-11-27 14:53:40] 2025-11-27 19:53:06,465 | INFO     | cat /etc/os-release:
[2025-11-27 14:53:40] NAME="CentOS Linux"
[2025-11-27 14:53:40] VERSION="7 (Core)"
[2025-11-27 14:53:40] ID="centos"
[2025-11-27 14:53:40] ID_LIKE="rhel fedora"
[2025-11-27 14:53:40] VERSION_ID="7"
[2025-11-27 14:53:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 14:53:40] ANSI_COLOR="0;31"
[2025-11-27 14:53:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 14:53:40] HOME_URL="https://www.centos.org/"
[2025-11-27 14:53:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 14:53:40] 
[2025-11-27 14:53:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 14:53:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 14:53:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 14:53:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 14:53:40] 
[2025-11-27 14:53:40] 2025-11-27 19:53:06,465 | INFO     | ***************************************
[2025-11-27 14:53:40] 2025-11-27 19:53:06,973 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-27 14:53:40] 2025-11-27 19:53:07,048 | INFO     | sufficient remaining disk space (66851962880 B)
[2025-11-27 14:53:40] 2025-11-27 19:53:07,048 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 14:53:40] 2025-11-27 19:53:07,048 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 14:53:40] 2025-11-27 19:53:07,048 | INFO     | update_server=False
[2025-11-27 14:53:40] 2025-11-27 19:53:07,048 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 14:53:40] 2025-11-27 19:53:07,048 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 14:53:40] 2025-11-27 19:53:07,050 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 14:53:40] 2025-11-27 19:53:07,051 | INFO     | aborting loop
[2025-11-27 14:53:40] 2025-11-27 19:53:07,366 | INFO     | all data control threads have been joined
[2025-11-27 14:53:40] 2025-11-27 19:53:07,768 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 14:53:40] 2025-11-27 19:53:08,029 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 14:53:40] 2025-11-27 19:53:08,055 | INFO     | [job] retrieve thread has finished
[2025-11-27 14:53:40] 2025-11-27 19:53:08,060 | INFO     | [job] job monitor thread has finished
[2025-11-27 14:53:40] 2025-11-27 19:53:08,137 | INFO     | all job control threads have been joined
[2025-11-27 14:53:40] 2025-11-27 19:53:08,236 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 14:53:40] 2025-11-27 19:53:08,237 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 14:53:40] 2025-11-27 19:53:08,248 | INFO     | [data] copytool_in thread has finished
[2025-11-27 14:53:40] 2025-11-27 19:53:08,374 | INFO     | [data] control thread has finished
[2025-11-27 14:53:40] 2025-11-27 19:53:08,502 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 14:53:40] 2025-11-27 19:53:08,644 | INFO     | all payload control threads have been joined
[2025-11-27 14:53:40] 2025-11-27 19:53:08,682 | INFO     | [payload] validate_post thread has finished
[2025-11-27 14:53:40] 2025-11-27 19:53:08,774 | INFO     | [job] queue monitor thread has finished
[2025-11-27 14:53:40] 2025-11-27 19:53:08,808 | INFO     | [payload] failed_post thread has finished
[2025-11-27 14:53:40] 2025-11-27 19:53:08,886 | INFO     | [job] validate thread has finished
[2025-11-27 14:53:40] 2025-11-27 19:53:09,057 | INFO     | [data] copytool_out thread has finished
[2025-11-27 14:53:40] 2025-11-27 19:53:09,143 | INFO     | [job] control thread has finished
[2025-11-27 14:53:40] 2025-11-27 19:53:09,225 | INFO     | [monitor] cgroup control has ended
[2025-11-27 14:53:40] 2025-11-27 19:53:09,267 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 14:53:40] 2025-11-27 19:53:09,650 | INFO     | [payload] control thread has finished
[2025-11-27 14:53:40] 2025-11-27 19:53:12,041 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 14:53:40] 2025-11-27 19:53:12,872 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140629070616384)>', '<ExcThread(monitor, started 140628386092800)>']
[2025-11-27 14:53:40] 2025-11-27 19:53:17,898 | INFO     | all workflow threads have been joined
[2025-11-27 14:53:40] 2025-11-27 19:53:17,898 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 14:53:40] 2025-11-27 19:53:17,899 | INFO     | traces error code: 0
[2025-11-27 14:53:40] 2025-11-27 19:53:17,900 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 14:53:40] 2025-11-27 19:53:39,856 | INFO     | PID=4048846 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 14:53:40] 2025-11-27 19:53:39,856 | INFO     | .. there are 94 such processes running
[2025-11-27 14:53:40] 2025-11-27 19:53:39,856 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 14:53:40] 2025-11-27 19:53:39,856 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 14:53:40] 2025-11-27 19:53:39,856 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 14:53:40] 2025-11-27 19:53:39,856 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 14:53:40] 2025-11-27 19:53:39,856 | INFO     | [monitor] control thread has ended
[2025-11-27 14:53:40] 2025-11-27 19:53:40,104 [wrapper] ==== pilot stdout END ====
[2025-11-27 14:53:40] 2025-11-27 19:53:40,106 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 14:53:40] 2025-11-27 19:53:40,108 [wrapper] pilotpid: 4048846
[2025-11-27 14:53:40] 2025-11-27 19:53:40,117 [wrapper] Pilot exit status: 0
[2025-11-27 14:53:40] 2025-11-27 19:53:40,149 [wrapper] pandaids: 6898214240
[2025-11-27 14:53:40] 2025-11-27 19:53:40,313 [wrapper] cleanup supervisor_pilot 3627195 4048847
[2025-11-27 14:53:40] 2025-11-27 19:53:40,316 [wrapper] Test setup, not cleaning
[2025-11-27 14:53:40] 2025-11-27 19:53:40,318 [wrapper] apfmon messages muted
[2025-11-27 14:53:40] 2025-11-27 19:53:40,320 [wrapper] ==== wrapper stdout END ====
[2025-11-27 14:53:40] 2025-11-27 19:53:40,322 [wrapper] ==== wrapper stderr END ====
[2025-11-27 14:53:40]  *** Error codes and diagnostics ***
[2025-11-27 14:53:40]     "exeErrorCode": 0,
[2025-11-27 14:53:40]     "exeErrorDiag": "",
[2025-11-27 14:53:40]     "pilotErrorCode": 0,
[2025-11-27 14:53:40]     "pilotErrorDiag": "",
[2025-11-27 14:53:40]  *** Listing of results directory ***
[2025-11-27 14:53:40] total 1332044
[2025-11-27 14:53:40] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 22:33 pilot3.tar.gz
[2025-11-27 14:53:40] -rwx------. 1 boincer umatlas     36292 Nov 25 23:28 runpilot2-wrapper.sh
[2025-11-27 14:53:40] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 23:28 queuedata.json
[2025-11-27 14:53:40] -rw-r--r--. 1 boincer umatlas       100 Nov 27 01:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 14:53:40] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 01:21 run_atlas
[2025-11-27 14:53:40] -rw-r--r--. 1 boincer umatlas       105 Nov 27 01:21 job.xml
[2025-11-27 14:53:40] -rw-r--r--. 2 boincer umatlas 411629125 Nov 27 01:21 EVNT.47483658._002489.pool.root.1
[2025-11-27 14:53:40] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 01:21 shared
[2025-11-27 14:53:40] -rw-r--r--. 2 boincer umatlas    590104 Nov 27 01:21 input.tar.gz
[2025-11-27 14:53:40] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 01:21 start_atlas.sh
[2025-11-27 14:53:40] -rw-r--r--. 1 boincer umatlas         0 Nov 27 01:21 boinc_lockfile
[2025-11-27 14:53:40] -rw-r--r--. 1 boincer umatlas      2782 Nov 27 01:21 pandaJob.out
[2025-11-27 14:53:40] -rw-------. 1 boincer umatlas        57 Nov 27 01:21 setup.sh.local
[2025-11-27 14:53:40] -rw-------. 1 boincer umatlas    991554 Nov 27 01:21 agis_schedconf.cvmfs.json
[2025-11-27 14:53:40] drwx------. 5 boincer umatlas      4096 Nov 27 01:21 pilot3
[2025-11-27 14:53:40] -rw-r--r--. 1 boincer umatlas       533 Nov 27 14:34 boinc_task_state.xml
[2025-11-27 14:53:40] -rw-r--r--. 1 boincer umatlas      6946 Nov 27 14:49 init_data.xml
[2025-11-27 14:53:40] -rw-------. 1 boincer umatlas 932628514 Nov 27 14:51 HITS.47556161._004711.pool.root.1
[2025-11-27 14:53:40] -rw-------. 1 boincer umatlas      1071 Nov 27 14:52 memory_monitor_summary.json
[2025-11-27 14:53:40] -rw-------. 1 boincer umatlas        95 Nov 27 14:52 pilot_heartbeat.json
[2025-11-27 14:53:40] -rw-------. 1 boincer umatlas   1516240 Nov 27 14:52 agis_ddmendpoints.agis.ALL.json
[2025-11-27 14:53:40] -rw-------. 1 boincer umatlas   2158941 Nov 27 14:52 log.47556161._004711.job.log.tgz.1
[2025-11-27 14:53:40] -rw-------. 1 boincer umatlas      8639 Nov 27 14:53 heartbeat.json
[2025-11-27 14:53:40] -rw-------. 1 boincer umatlas       823 Nov 27 14:53 pilotlog.txt
[2025-11-27 14:53:40] -rw-------. 1 boincer umatlas   5757025 Nov 27 14:53 log.47556161._004711.job.log.1
[2025-11-27 14:53:40] -rw-------. 1 boincer umatlas       353 Nov 27 14:53 output.list
[2025-11-27 14:53:40] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 14:53 boinc_mmap_file
[2025-11-27 14:53:40] -rw-r--r--. 1 boincer umatlas       620 Nov 27 14:53 runtime_log
[2025-11-27 14:53:40] -rw-------. 1 boincer umatlas   7936000 Nov 27 14:53 result.tar.gz
[2025-11-27 14:53:40] -rw-r--r--. 1 boincer umatlas      9340 Nov 27 14:53 runtime_log.err
[2025-11-27 14:53:40] -rw-------. 1 boincer umatlas       664 Nov 27 14:53 PQGNDmtJMi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmuvJKDmUwGcUn.diag
[2025-11-27 14:53:40] -rw-r--r--. 1 boincer umatlas        29 Nov 27 14:53 wrapper_checkpoint.txt
[2025-11-27 14:53:40] -rw-r--r--. 1 boincer umatlas     21421 Nov 27 14:53 stderr.txt
[2025-11-27 14:53:40] HITS file was successfully produced:
[2025-11-27 14:53:40] -rw-------. 1 boincer umatlas 932628514 Nov 27 14:51 shared/HITS.pool.root.1
[2025-11-27 14:53:40]  *** Contents of shared directory: ***
[2025-11-27 14:53:40] total 1321112
[2025-11-27 14:53:40] -rw-r--r--. 2 boincer umatlas 411629125 Nov 27 01:21 ATLAS.root_0
[2025-11-27 14:53:40] -rw-r--r--. 2 boincer umatlas    590104 Nov 27 01:21 input.tar.gz
[2025-11-27 14:53:40] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 01:21 start_atlas.sh
[2025-11-27 14:53:40] -rw-------. 1 boincer umatlas 932628514 Nov 27 14:51 HITS.pool.root.1
[2025-11-27 14:53:40] -rw-------. 1 boincer umatlas   7936000 Nov 27 14:53 result.tar.gz
14:53:42 (4044122): run_atlas exited; CPU time 188104.165263
14:53:42 (4044122): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN