Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
02:28:53 (2434843): wrapper (7.7.26015): starting
02:28:53 (2434843): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 02:28:53] Arguments: --nthreads 8
[2025-11-27 02:28:53] Threads: 8
[2025-11-27 02:28:53] Checking for CVMFS
[2025-11-27 02:28:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 02:28:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 02:28:53] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 02:28:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 02:28:54] 2.13.2.0 9630 34982 191320 153352 1 166 36955534 39288832 6670 16776704 0 24705136 99.601 22835221 31947 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 02:28:54] CVMFS is ok
[2025-11-27 02:28:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 02:28:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 02:28:54] Further information can be found at the LHC@home message board.
[2025-11-27 02:28:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 02:28:54] Checking for apptainer binary...
[2025-11-27 02:28:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 02:28:54] Running /usr/bin/apptainer --version
[2025-11-27 02:28:55] apptainer version 1.4.4-1.el9
[2025-11-27 02:28:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 02:29:14] c-211-17.aglt2.org
[2025-11-27 02:29:15] apptainer works
[2025-11-27 02:29:15] Set ATHENA_PROC_NUMBER=8
[2025-11-27 02:29:15] Set ATHENA_CORE_NUMBER=8
[2025-11-27 02:29:15] Starting ATLAS job with PandaID=6898212790
[2025-11-27 02:29:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 00:38:19]  *** The last 200 lines of the pilot log: ***
[2025-11-28 00:38:19] 2025-11-28 05:37:09,352 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:38:19] 2025-11-28 05:37:09,600 | INFO     | time since job start (79637s) is within the limit (172800.0s)
[2025-11-28 00:38:19] 2025-11-28 05:37:11,610 | INFO     | time since job start (79639s) is within the limit (172800.0s)
[2025-11-28 00:38:19] 2025-11-28 05:37:11,857 | INFO     | monitor loop #5354: job 0:6898212790 is in state 'finished'
[2025-11-28 00:38:19] 2025-11-28 05:37:11,857 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:38:19] 2025-11-28 05:37:13,616 | INFO     | time since job start (79641s) is within the limit (172800.0s)
[2025-11-28 00:38:19] 2025-11-28 05:37:14,362 | INFO     | monitor loop #5355: job 0:6898212790 is in state 'finished'
[2025-11-28 00:38:19] 2025-11-28 05:37:14,367 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:38:19] 2025-11-28 05:37:15,560 | INFO     | PID=2438894 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 00:38:19] 2025-11-28 05:37:15,560 | INFO     | .. there are 9 such processes running
[2025-11-28 00:38:19] 2025-11-28 05:37:16,571 | INFO     | time since job start (79644s) is within the limit (172800.0s)
[2025-11-28 00:38:19] 2025-11-28 05:37:16,892 | INFO     | monitor loop #5356: job 0:6898212790 is in state 'finished'
[2025-11-28 00:38:19] 2025-11-28 05:37:16,893 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:38:19] 2025-11-28 05:37:18,578 | INFO     | time since job start (79646s) is within the limit (172800.0s)
[2025-11-28 00:38:19] 2025-11-28 05:37:19,397 | INFO     | monitor loop #5357: job 0:6898212790 is in state 'finished'
[2025-11-28 00:38:19] 2025-11-28 05:37:19,399 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:38:19] 2025-11-28 05:37:19,795 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-28 00:38:19] 2025-11-28 05:37:19,807 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2599.877775
[2025-11-28 00:38:19] 2025-11-28 05:37:19,814 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6898212790/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 00:38:19] 2025-11-28 05:37:19,815 | INFO     | extracted standard info from prmon json
[2025-11-28 00:38:19] 2025-11-28 05:37:19,815 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 00:38:19] 2025-11-28 05:37:19,815 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 00:38:19] 2025-11-28 05:37:19,840 | INFO     | fitting pss+swap vs Time
[2025-11-28 00:38:19] 2025-11-28 05:37:19,842 | INFO     | sum of square deviations: 687550717953.079
[2025-11-28 00:38:19] 2025-11-28 05:37:19,888 | INFO     | sum of deviations: 2392393638092.1465
[2025-11-28 00:38:19] 2025-11-28 05:37:19,888 | INFO     | mean x: 1764268411.6771472
[2025-11-28 00:38:19] 2025-11-28 05:37:19,889 | INFO     | mean y: 2945049.575153374
[2025-11-28 00:38:19] 2025-11-28 05:37:19,889 | INFO     | intersect: -6135983197.855442
[2025-11-28 00:38:19] 2025-11-28 05:37:19,891 | INFO     | chi2: 14.922103643990917
[2025-11-28 00:38:19] 2025-11-28 05:37:19,892 | INFO     | sum of square deviations: 679672335598.4865
[2025-11-28 00:38:19] 2025-11-28 05:37:19,938 | INFO     | sum of deviations: 2851493952565.7163
[2025-11-28 00:38:19] 2025-11-28 05:37:19,938 | INFO     | mean x: 1764268259.1809084
[2025-11-28 00:38:19] 2025-11-28 05:37:19,939 | INFO     | mean y: 2953933.762894534
[2025-11-28 00:38:19] 2025-11-28 05:37:19,939 | INFO     | intersect: -7398848388.128176
[2025-11-28 00:38:19] 2025-11-28 05:37:19,940 | INFO     | chi2: 11.479628023295412
[2025-11-28 00:38:19] 2025-11-28 05:37:19,941 | INFO     | current chi2=11.479628023295412 (change=23.06964019836291 %)
[2025-11-28 00:38:19] 2025-11-28 05:37:19,941 | INFO     | right removable region: 1298
[2025-11-28 00:38:19] 2025-11-28 05:37:19,943 | INFO     | sum of square deviations: 679671478791.1248
[2025-11-28 00:38:19] 2025-11-28 05:37:19,988 | INFO     | sum of deviations: 1979783615478.8674
[2025-11-28 00:38:19] 2025-11-28 05:37:19,991 | INFO     | mean x: 1764268564.1816783
[2025-11-28 00:38:19] 2025-11-28 05:37:19,991 | INFO     | mean y: 2953031.767513472
[2025-11-28 00:38:19] 2025-11-28 05:37:19,991 | INFO     | intersect: -5136103270.67406
[2025-11-28 00:38:19] 2025-11-28 05:37:19,993 | INFO     | chi2: 12.46095854471527
[2025-11-28 00:38:19] 2025-11-28 05:37:19,993 | INFO     | current chi2=12.46095854471527 (change=16.49328511578019 %)
[2025-11-28 00:38:19] 2025-11-28 05:37:19,993 | INFO     | left removable region: 10
[2025-11-28 00:38:19] 2025-11-28 05:37:20,033 | INFO     | sum of square deviations: 662550941780.9061
[2025-11-28 00:38:19] 2025-11-28 05:37:20,308 | INFO     | sum of deviations: 2407797665924.0747
[2025-11-28 00:38:19] 2025-11-28 05:37:20,308 | INFO     | mean x: 1764268533.6871119
[2025-11-28 00:38:19] 2025-11-28 05:37:20,308 | INFO     | mean y: 2965944.149068323
[2025-11-28 00:38:19] 2025-11-28 05:37:20,308 | INFO     | intersect: -6408619021.765683
[2025-11-28 00:38:19] 2025-11-28 05:37:20,316 | INFO     | chi2: 8.302908331461142
[2025-11-28 00:38:19] 2025-11-28 05:37:20,317 | INFO     | current memory leak: 3.63 B/s (using 1288 data points, chi2=8.30)
[2025-11-28 00:38:19] 2025-11-28 05:37:20,318 | INFO     | could have reported an average CPU frequency of 2601 MHz (47 samples)
[2025-11-28 00:38:19] 2025-11-28 05:37:20,318 | INFO     | ..............................
[2025-11-28 00:38:19] 2025-11-28 05:37:20,318 | INFO     | . Timing measurements:
[2025-11-28 00:38:19] 2025-11-28 05:37:20,319 | INFO     | . get job = 0 s
[2025-11-28 00:38:19] 2025-11-28 05:37:20,319 | INFO     | . initial setup = 5 s
[2025-11-28 00:38:19] 2025-11-28 05:37:20,319 | INFO     | . payload setup = 21 s
[2025-11-28 00:38:19] 2025-11-28 05:37:20,319 | INFO     | . stage-in = 0 s
[2025-11-28 00:38:19] 2025-11-28 05:37:20,323 | INFO     | . payload execution = 79537 s
[2025-11-28 00:38:19] 2025-11-28 05:37:20,323 | INFO     | . stage-out = 10 s
[2025-11-28 00:38:19] 2025-11-28 05:37:20,324 | INFO     | . log creation = 3 s
[2025-11-28 00:38:19] 2025-11-28 05:37:20,324 | INFO     | ..............................
[2025-11-28 00:38:19] 2025-11-28 05:37:20,590 | INFO     | time since job start (79648s) is within the limit (172800.0s)
[2025-11-28 00:38:19] 2025-11-28 05:37:20,669 | INFO     | 
[2025-11-28 00:38:19] 2025-11-28 05:37:20,669 | INFO     | job summary report
[2025-11-28 00:38:19] 2025-11-28 05:37:20,669 | INFO     | --------------------------------------------------
[2025-11-28 00:38:19] 2025-11-28 05:37:20,669 | INFO     | PanDA job id: 6898212790
[2025-11-28 00:38:19] 2025-11-28 05:37:20,670 | INFO     | task id: 47556161
[2025-11-28 00:38:19] 2025-11-28 05:37:20,670 | INFO     | errors: (none)
[2025-11-28 00:38:19] 2025-11-28 05:37:20,670 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 00:38:19] 2025-11-28 05:37:20,670 | INFO     | pilot state: finished 
[2025-11-28 00:38:19] 2025-11-28 05:37:20,670 | INFO     | transexitcode: 0
[2025-11-28 00:38:19] 2025-11-28 05:37:20,670 | INFO     | exeerrorcode: 0
[2025-11-28 00:38:19] 2025-11-28 05:37:20,670 | INFO     | exeerrordiag: 
[2025-11-28 00:38:19] 2025-11-28 05:37:20,670 | INFO     | exitcode: 0
[2025-11-28 00:38:19] 2025-11-28 05:37:20,671 | INFO     | exitmsg: OK
[2025-11-28 00:38:19] 2025-11-28 05:37:20,671 | INFO     | cpuconsumptiontime: 303853 s
[2025-11-28 00:38:19] 2025-11-28 05:37:20,671 | INFO     | nevents: 1000
[2025-11-28 00:38:19] 2025-11-28 05:37:20,671 | INFO     | neventsw: 0
[2025-11-28 00:38:19] 2025-11-28 05:37:20,671 | INFO     | pid: 2446975
[2025-11-28 00:38:19] 2025-11-28 05:37:20,671 | INFO     | pgrp: 2446975
[2025-11-28 00:38:19] 2025-11-28 05:37:20,671 | INFO     | corecount: 8
[2025-11-28 00:38:19] 2025-11-28 05:37:20,671 | INFO     | event service: False
[2025-11-28 00:38:19] 2025-11-28 05:37:20,671 | INFO     | sizes: {0: 2284093, 1: 2284292, 12: 2284292, 15: 2284582, 22: 2284610, 79563: 2348720, 79574: 2357714, 79576: 2357770, 79609: 2358016}
[2025-11-28 00:38:19] 2025-11-28 05:37:20,671 | INFO     | --------------------------------------------------
[2025-11-28 00:38:19] 2025-11-28 05:37:20,672 | INFO     | 
[2025-11-28 00:38:19] 2025-11-28 05:37:20,672 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-28 00:38:19] 2025-11-28 05:37:20,753 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 00:38:19] 2025-11-28 05:37:20,753 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 00:38:19] 2025-11-28 05:37:20,753 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 00:38:19] 2025-11-28 05:37:20,753 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 00:38:19] 2025-11-28 05:37:20,753 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 00:38:19] 2025-11-28 05:37:20,753 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 00:38:19] 2025-11-28 05:37:20,754 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 00:38:19] 2025-11-28 05:37:20,754 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 00:38:19] 2025-11-28 05:37:20,754 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 00:38:19] 2025-11-28 05:37:20,754 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 00:38:19] 2025-11-28 05:37:20,754 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 00:38:19] 2025-11-28 05:37:20,754 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 00:38:19] 2025-11-28 05:37:20,754 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 00:38:19] 2025-11-28 05:37:20,754 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 00:38:19] 2025-11-28 05:37:20,755 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 00:38:19] 2025-11-28 05:37:20,755 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 00:38:19] 2025-11-28 05:37:20,755 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 00:38:19] 2025-11-28 05:37:20,755 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 00:38:19] 2025-11-28 05:37:20,755 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 00:38:19] 2025-11-28 05:37:20,755 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 00:38:19] 2025-11-28 05:37:20,755 | INFO     | job 6898212790 has completed (purged errors)
[2025-11-28 00:38:19] 2025-11-28 05:37:20,756 | INFO     | overall cleanup function is called
[2025-11-28 00:38:19] 2025-11-28 05:37:21,806 | INFO     | --- collectZombieJob: --- 10, [2446975]
[2025-11-28 00:38:19] 2025-11-28 05:37:21,807 | INFO     | zombie collector waiting for pid 2446975
[2025-11-28 00:38:19] 2025-11-28 05:37:21,807 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 00:38:19] 2025-11-28 05:37:21,807 | INFO     | collected zombie processes
[2025-11-28 00:38:19] 2025-11-28 05:37:21,807 | INFO     | will attempt to kill all subprocesses of pid=2446975
[2025-11-28 00:38:19] 2025-11-28 05:37:22,380 | INFO     | process IDs to be killed: [2446975] (in reverse order)
[2025-11-28 00:38:19] 2025-11-28 05:37:22,651 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 00:38:19] 2025-11-28 05:37:22,651 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 00:38:19] 2025-11-28 05:37:22,678 | INFO     | did not find any defunct processes belonging to 2446975
[2025-11-28 00:38:19] 2025-11-28 05:37:22,702 | INFO     | did not find any defunct processes belonging to 2446975
[2025-11-28 00:38:19] 2025-11-28 05:37:22,710 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 00:38:19] 2025-11-28 05:37:22,711 | INFO     | ready for new job
[2025-11-28 00:38:19] 2025-11-28 05:37:22,711 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 00:38:19] 2025-11-28 05:37:22,726 | INFO     | ***************************************
[2025-11-28 00:38:19] 2025-11-28 05:37:22,726 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 00:38:19] 2025-11-28 05:37:22,726 | INFO     | ***************************************
[2025-11-28 00:38:19] 2025-11-28 05:37:22,734 | INFO     | 
[2025-11-28 00:38:19] 2025-11-28 05:37:22,740 | INFO     | architecture information:
[2025-11-28 00:38:19] 2025-11-28 05:37:22,744 | INFO     | executing command: cat /etc/os-release
[2025-11-28 00:38:19] 2025-11-28 05:37:22,793 | INFO     | cat /etc/os-release:
[2025-11-28 00:38:19] NAME="CentOS Linux"
[2025-11-28 00:38:19] VERSION="7 (Core)"
[2025-11-28 00:38:19] ID="centos"
[2025-11-28 00:38:19] ID_LIKE="rhel fedora"
[2025-11-28 00:38:19] VERSION_ID="7"
[2025-11-28 00:38:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 00:38:19] ANSI_COLOR="0;31"
[2025-11-28 00:38:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 00:38:19] HOME_URL="https://www.centos.org/"
[2025-11-28 00:38:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 00:38:19] 
[2025-11-28 00:38:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 00:38:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 00:38:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 00:38:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 00:38:19] 
[2025-11-28 00:38:19] 2025-11-28 05:37:22,794 | INFO     | ***************************************
[2025-11-28 00:38:19] 2025-11-28 05:37:23,298 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-28 00:38:19] 2025-11-28 05:37:23,396 | INFO     | sufficient remaining disk space (48823795712 B)
[2025-11-28 00:38:19] 2025-11-28 05:37:23,396 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 00:38:19] 2025-11-28 05:37:23,396 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 00:38:19] 2025-11-28 05:37:23,396 | INFO     | update_server=False
[2025-11-28 00:38:19] 2025-11-28 05:37:23,397 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 00:38:19] 2025-11-28 05:37:23,397 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 00:38:19] 2025-11-28 05:37:23,397 | INFO     | aborting loop
[2025-11-28 00:38:19] 2025-11-28 05:37:23,584 | INFO     | all job control threads have been joined
[2025-11-28 00:38:19] 2025-11-28 05:37:23,679 | INFO     | all payload control threads have been joined
[2025-11-28 00:38:19] 2025-11-28 05:37:23,932 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 00:38:19] 2025-11-28 05:37:24,067 | INFO     | all data control threads have been joined
[2025-11-28 00:38:19] 2025-11-28 05:37:24,402 | INFO     | [job] retrieve thread has finished
[2025-11-28 00:38:19] 2025-11-28 05:37:24,403 | INFO     | [job] job monitor thread has finished
[2025-11-28 00:38:19] 2025-11-28 05:37:24,509 | INFO     | [data] copytool_in thread has finished
[2025-11-28 00:38:19] 2025-11-28 05:37:24,590 | INFO     | [job] control thread has finished
[2025-11-28 00:38:19] 2025-11-28 05:37:24,685 | INFO     | [payload] control thread has finished
[2025-11-28 00:38:19] 2025-11-28 05:37:24,842 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 00:38:19] 2025-11-28 05:37:24,843 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 00:38:19] 2025-11-28 05:37:24,843 | INFO     | [payload] failed_post thread has finished
[2025-11-28 00:38:19] 2025-11-28 05:37:25,019 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 00:38:19] 2025-11-28 05:37:25,075 | INFO     | [data] control thread has finished
[2025-11-28 00:38:19] 2025-11-28 05:37:25,323 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 00:38:19] 2025-11-28 05:37:25,498 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 00:38:19] 2025-11-28 05:37:25,519 | INFO     | [job] validate thread has finished
[2025-11-28 00:38:19] 2025-11-28 05:37:25,703 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 00:38:19] 2025-11-28 05:37:25,866 | INFO     | [payload] validate_post thread has finished
[2025-11-28 00:38:19] 2025-11-28 05:37:25,956 | INFO     | [data] copytool_out thread has finished
[2025-11-28 00:38:19] 2025-11-28 05:37:26,710 | INFO     | [job] queue monitor thread has finished
[2025-11-28 00:38:19] 2025-11-28 05:37:29,028 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 00:38:19] 2025-11-28 05:37:56,026 | INFO     | PID=2438894 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 00:38:19] 2025-11-28 05:37:56,026 | INFO     | .. there are 9 such processes running
[2025-11-28 00:38:19] 2025-11-28 05:37:56,027 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 00:38:19] 2025-11-28 05:37:56,027 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 00:38:19] 2025-11-28 05:37:56,027 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 00:38:19] 2025-11-28 05:38:10,731 | INFO     | [monitor] cgroup control has ended
[2025-11-28 00:38:19] 2025-11-28 05:38:11,793 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140228367718208)>', '<ExcThread(monitor, started 140227796530944)>']
[2025-11-28 00:38:19] 2025-11-28 05:38:12,148 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 00:38:19] 2025-11-28 05:38:12,149 | INFO     | [monitor] control thread has ended
[2025-11-28 00:38:19] 2025-11-28 05:38:16,819 | INFO     | all workflow threads have been joined
[2025-11-28 00:38:19] 2025-11-28 05:38:16,820 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 00:38:19] 2025-11-28 05:38:16,820 | INFO     | traces error code: 0
[2025-11-28 00:38:19] 2025-11-28 05:38:16,820 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 00:38:19] 2025-11-28 05:38:18,309 [wrapper] ==== pilot stdout END ====
[2025-11-28 00:38:19] 2025-11-28 05:38:18,380 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 00:38:19] 2025-11-28 05:38:18,413 [wrapper] pilotpid: 2438894
[2025-11-28 00:38:19] 2025-11-28 05:38:18,452 [wrapper] Pilot exit status: 0
[2025-11-28 00:38:19] 2025-11-28 05:38:18,562 [wrapper] pandaids: 6898212790
[2025-11-28 00:38:19] 2025-11-28 05:38:18,832 [wrapper] cleanup supervisor_pilot  159717 2438895
[2025-11-28 00:38:19] 2025-11-28 05:38:18,846 [wrapper] Test setup, not cleaning
[2025-11-28 00:38:19] 2025-11-28 05:38:18,862 [wrapper] apfmon messages muted
[2025-11-28 00:38:19] 2025-11-28 05:38:18,879 [wrapper] ==== wrapper stdout END ====
[2025-11-28 00:38:19] 2025-11-28 05:38:18,895 [wrapper] ==== wrapper stderr END ====
[2025-11-28 00:38:19]  *** Error codes and diagnostics ***
[2025-11-28 00:38:19]     "exeErrorCode": 0,
[2025-11-28 00:38:19]     "exeErrorDiag": "",
[2025-11-28 00:38:19]     "pilotErrorCode": 0,
[2025-11-28 00:38:19]     "pilotErrorDiag": "",
[2025-11-28 00:38:19]  *** Listing of results directory ***
[2025-11-28 00:38:19] total 1313084
[2025-11-28 00:38:19] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 22:33 pilot3.tar.gz
[2025-11-28 00:38:19] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 23:21 queuedata.json
[2025-11-28 00:38:19] -rwx------. 1 boincer umatlas     36292 Nov 25 23:25 runpilot2-wrapper.sh
[2025-11-28 00:38:19] -rw-r--r--. 1 boincer umatlas       100 Nov 27 02:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 00:38:19] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 02:28 run_atlas
[2025-11-28 00:38:19] -rw-r--r--. 1 boincer umatlas       105 Nov 27 02:28 job.xml
[2025-11-28 00:38:19] -rw-r--r--. 2 boincer umatlas 405785196 Nov 27 02:28 EVNT.47483658._002482.pool.root.1
[2025-11-28 00:38:19] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 02:28 start_atlas.sh
[2025-11-28 00:38:19] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 02:28 shared
[2025-11-28 00:38:19] -rw-r--r--. 2 boincer umatlas    590105 Nov 27 02:28 input.tar.gz
[2025-11-28 00:38:19] -rw-r--r--. 1 boincer umatlas         0 Nov 27 02:28 boinc_lockfile
[2025-11-28 00:38:19] -rw-r--r--. 1 boincer umatlas      2785 Nov 27 02:29 pandaJob.out
[2025-11-28 00:38:19] -rw-------. 1 boincer umatlas        57 Nov 27 02:29 setup.sh.local
[2025-11-28 00:38:19] -rw-------. 1 boincer umatlas    991570 Nov 27 02:29 agis_schedconf.cvmfs.json
[2025-11-28 00:38:19] drwx------. 5 boincer umatlas      4096 Nov 27 02:29 pilot3
[2025-11-28 00:38:19] -rw-r--r--. 1 boincer umatlas       533 Nov 28 00:10 boinc_task_state.xml
[2025-11-28 00:38:19] -rw-------. 1 boincer umatlas 908493199 Nov 28 00:34 HITS.47556161._004645.pool.root.1
[2025-11-28 00:38:19] -rw-r--r--. 1 boincer umatlas      6661 Nov 28 00:36 init_data.xml
[2025-11-28 00:38:19] -rw-------. 1 boincer umatlas      1069 Nov 28 00:36 memory_monitor_summary.json
[2025-11-28 00:38:19] -rw-------. 1 boincer umatlas   1516240 Nov 28 00:36 agis_ddmendpoints.agis.ALL.json
[2025-11-28 00:38:19] -rw-------. 1 boincer umatlas   2415667 Nov 28 00:36 log.47556161._004645.job.log.tgz.1
[2025-11-28 00:38:19] -rw-------. 1 boincer umatlas        95 Nov 28 00:37 pilot_heartbeat.json
[2025-11-28 00:38:19] -rw-------. 1 boincer umatlas      8619 Nov 28 00:37 heartbeat.json
[2025-11-28 00:38:19] -rw-r--r--. 1 boincer umatlas        29 Nov 28 00:38 wrapper_checkpoint.txt
[2025-11-28 00:38:19] -rw-r--r--. 1 boincer umatlas      8192 Nov 28 00:38 boinc_mmap_file
[2025-11-28 00:38:19] -rw-------. 1 boincer umatlas      4823 Nov 28 00:38 pilotlog.txt
[2025-11-28 00:38:19] -rw-------. 1 boincer umatlas  10782919 Nov 28 00:38 log.47556161._004645.job.log.1
[2025-11-28 00:38:19] -rw-------. 1 boincer umatlas       353 Nov 28 00:38 output.list
[2025-11-28 00:38:19] -rw-r--r--. 1 boincer umatlas       620 Nov 28 00:38 runtime_log
[2025-11-28 00:38:19] -rw-------. 1 boincer umatlas  13219840 Nov 28 00:38 result.tar.gz
[2025-11-28 00:38:19] -rw-------. 1 boincer umatlas       660 Nov 28 00:38 WUPKDmyGMi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmCvJKDm2eOFbm.diag
[2025-11-28 00:38:19] -rw-r--r--. 1 boincer umatlas      9343 Nov 28 00:38 runtime_log.err
[2025-11-28 00:38:19] -rw-r--r--. 1 boincer umatlas     21854 Nov 28 00:38 stderr.txt
[2025-11-28 00:38:19] HITS file was successfully produced:
[2025-11-28 00:38:19] -rw-------. 1 boincer umatlas 908493199 Nov 28 00:34 shared/HITS.pool.root.1
[2025-11-28 00:38:19]  *** Contents of shared directory: ***
[2025-11-28 00:38:19] total 1296992
[2025-11-28 00:38:19] -rw-r--r--. 2 boincer umatlas 405785196 Nov 27 02:28 ATLAS.root_0
[2025-11-28 00:38:19] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 02:28 start_atlas.sh
[2025-11-28 00:38:19] -rw-r--r--. 2 boincer umatlas    590105 Nov 27 02:28 input.tar.gz
[2025-11-28 00:38:19] -rw-------. 1 boincer umatlas 908493199 Nov 28 00:34 HITS.pool.root.1
[2025-11-28 00:38:19] -rw-------. 1 boincer umatlas  13219840 Nov 28 00:38 result.tar.gz
00:38:41 (2434843): run_atlas exited; CPU time 304987.366851
00:38:41 (2434843): called boinc_finish(0)

</stderr_txt>
]]>

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