Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
00:57:28 (32017): wrapper (7.7.26015): starting
00:57:28 (32017): wrapper: running run_atlas (--nthreads 12)
[2025-11-27 00:57:28] Arguments: --nthreads 12
[2025-11-27 00:57:28] Threads: 12
[2025-11-27 00:57:28] Checking for CVMFS
[2025-11-27 00:57:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:57:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:57:28] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:57:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:57:28] 2.11.2.0 3035 288685 95692 153349 2 82 20025522 20275200 1 130560 3 129558208 99.969 17147808 14308 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 00:57:28] CVMFS is ok
[2025-11-27 00:57:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:57:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:57:28] Further information can be found at the LHC@home message board.
[2025-11-27 00:57:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:57:28] Checking for apptainer binary...
[2025-11-27 00:57:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:57:28] Running /usr/bin/apptainer --version
[2025-11-27 00:57:28] apptainer version 1.3.2-1.el7
[2025-11-27 00:57:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:57:30] c-205-31.aglt2.org
[2025-11-27 00:57:30] apptainer works
[2025-11-27 00:57:30] Set ATHENA_PROC_NUMBER=12
[2025-11-27 00:57:30] Set ATHENA_CORE_NUMBER=12
[2025-11-27 00:57:30] Starting ATLAS job with PandaID=6898214339
[2025-11-27 00:57:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
06:31:18 (31363): wrapper (7.7.26015): starting
06:31:18 (31363): wrapper: running run_atlas (--nthreads 12)
[2025-11-27 06:31:18] Arguments: --nthreads 12
[2025-11-27 06:31:18] Threads: 12
[2025-11-27 06:31:18] This job has been restarted, cleaning up previous attempt
[2025-11-27 06:31:18] Checking for CVMFS
[2025-11-27 06:31:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 06:31:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 06:31:19] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 06:31:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 06:31:19] 2.11.2.0 3035 289019 97628 153362 1 49 10364984 20275200 1 130560 3 129701367 99.969 17164896 14318 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 06:31:19] CVMFS is ok
[2025-11-27 06:31:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 06:31:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 06:31:19] Further information can be found at the LHC@home message board.
[2025-11-27 06:31:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 06:31:19] Checking for apptainer binary...
[2025-11-27 06:31:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 06:31:19] Running /usr/bin/apptainer --version
[2025-11-27 06:31:19] apptainer version 1.3.2-1.el7
[2025-11-27 06:31:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 06:31:20] c-205-31.aglt2.org
[2025-11-27 06:31:20] apptainer works
[2025-11-27 06:31:20] Set ATHENA_PROC_NUMBER=12
[2025-11-27 06:31:20] Set ATHENA_CORE_NUMBER=12
[2025-11-27 06:31:20] Starting ATLAS job with PandaID=6898214339
[2025-11-27 06:31:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 13:47:25]  *** The last 200 lines of the pilot log: ***
[2025-11-27 13:47:25] 2025-11-27 18:46:18,553 | INFO     | monitor loop #1957: job 0:6898214339 is in state 'finished'
[2025-11-27 13:47:25] 2025-11-27 18:46:18,553 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 13:47:25] 2025-11-27 18:46:19,678 | INFO     | time since job start (26083s) is within the limit (172800.0s)
[2025-11-27 13:47:25] 2025-11-27 18:46:19,943 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-27 13:47:25] 2025-11-27 18:46:19,946 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.6666666666667
[2025-11-27 13:47:25] 2025-11-27 18:46:19,948 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6898214339/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 13:47:25] 2025-11-27 18:46:19,949 | INFO     | extracted standard info from prmon json
[2025-11-27 13:47:25] 2025-11-27 18:46:19,949 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 13:47:25] 2025-11-27 18:46:19,949 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 13:47:25] 2025-11-27 18:46:19,955 | INFO     | fitting pss+swap vs Time
[2025-11-27 13:47:25] 2025-11-27 18:46:19,956 | INFO     | sum of square deviations: 24141407530.178043
[2025-11-27 13:47:25] 2025-11-27 18:46:19,960 | INFO     | sum of deviations: 361912538754.47266
[2025-11-27 13:47:25] 2025-11-27 18:46:19,960 | INFO     | mean x: 1764256118.2154567
[2025-11-27 13:47:25] 2025-11-27 18:46:19,960 | INFO     | mean y: 3439094.62529274
[2025-11-27 13:47:25] 2025-11-27 18:46:19,960 | INFO     | intersect: -26445160058.43983
[2025-11-27 13:47:25] 2025-11-27 18:46:19,961 | INFO     | chi2: 5.269329021582417
[2025-11-27 13:47:25] 2025-11-27 18:46:19,961 | INFO     | sum of square deviations: 23303271037.44316
[2025-11-27 13:47:25] 2025-11-27 18:46:19,965 | INFO     | sum of deviations: 511952019476.82007
[2025-11-27 13:47:25] 2025-11-27 18:46:19,965 | INFO     | mean x: 1764255965.7180095
[2025-11-27 13:47:25] 2025-11-27 18:46:19,965 | INFO     | mean y: 3466362.0236966824
[2025-11-27 13:47:25] 2025-11-27 18:46:19,966 | INFO     | intersect: -38755659044.538246
[2025-11-27 13:47:25] 2025-11-27 18:46:19,966 | INFO     | chi2: 2.680821492906337
[2025-11-27 13:47:25] 2025-11-27 18:46:19,966 | INFO     | current chi2=2.680821492906337 (change=49.12404441009327 %)
[2025-11-27 13:47:25] 2025-11-27 18:46:19,967 | INFO     | sum of square deviations: 22484762819.70274
[2025-11-27 13:47:25] 2025-11-27 18:46:19,970 | INFO     | sum of deviations: 552618603246.8085
[2025-11-27 13:47:25] 2025-11-27 18:46:19,971 | INFO     | mean x: 1764255813.2206235
[2025-11-27 13:47:25] 2025-11-27 18:46:19,971 | INFO     | mean y: 3473897.0455635493
[2025-11-27 13:47:25] 2025-11-27 18:46:19,971 | INFO     | intersect: -43357471961.70789
[2025-11-27 13:47:25] 2025-11-27 18:46:19,971 | INFO     | chi2: 2.2922768823549426
[2025-11-27 13:47:25] 2025-11-27 18:46:19,971 | INFO     | current chi2=2.2922768823549426 (change=14.493490580387904 %)
[2025-11-27 13:47:25] 2025-11-27 18:46:19,972 | INFO     | right removable region: 416
[2025-11-27 13:47:25] 2025-11-27 18:46:19,972 | INFO     | sum of square deviations: 23303214917.443157
[2025-11-27 13:47:25] 2025-11-27 18:46:19,976 | INFO     | sum of deviations: 231080501501.11108
[2025-11-27 13:47:25] 2025-11-27 18:46:19,976 | INFO     | mean x: 1764256270.7180095
[2025-11-27 13:47:25] 2025-11-27 18:46:19,976 | INFO     | mean y: 3462812.656398104
[2025-11-27 13:47:25] 2025-11-27 18:46:19,976 | INFO     | intersect: -17491343172.625614
[2025-11-27 13:47:25] 2025-11-27 18:46:19,977 | INFO     | chi2: 3.109475066214274
[2025-11-27 13:47:25] 2025-11-27 18:46:19,977 | INFO     | current chi2=3.109475066214274 (change=40.98916477831789 %)
[2025-11-27 13:47:25] 2025-11-27 18:46:19,977 | INFO     | sum of square deviations: 22484650579.702744
[2025-11-27 13:47:25] 2025-11-27 18:46:19,981 | INFO     | sum of deviations: 198847822517.58496
[2025-11-27 13:47:25] 2025-11-27 18:46:19,981 | INFO     | mean x: 1764256423.2206235
[2025-11-27 13:47:25] 2025-11-27 18:46:19,981 | INFO     | mean y: 3468811.211031175
[2025-11-27 13:47:25] 2025-11-27 18:46:19,981 | INFO     | intersect: -15599110685.255476
[2025-11-27 13:47:25] 2025-11-27 18:46:19,982 | INFO     | chi2: 3.056162468293482
[2025-11-27 13:47:25] 2025-11-27 18:46:19,982 | INFO     | current chi2=3.056162468293482 (change=1.7145208366535987 %)
[2025-11-27 13:47:25] 2025-11-27 18:46:19,982 | INFO     | left removable region: 20
[2025-11-27 13:47:25] 2025-11-27 18:46:19,983 | INFO     | sum of square deviations: 19255946745.444324
[2025-11-27 13:47:25] 2025-11-27 18:46:19,986 | INFO     | sum of deviations: 350077366857.3885
[2025-11-27 13:47:25] 2025-11-27 18:46:19,986 | INFO     | mean x: 1764256392.7222223
[2025-11-27 13:47:25] 2025-11-27 18:46:19,986 | INFO     | mean y: 3512272.73989899
[2025-11-27 13:47:25] 2025-11-27 18:46:19,986 | INFO     | intersect: -32071058798.22713
[2025-11-27 13:47:25] 2025-11-27 18:46:19,987 | INFO     | chi2: 0.04154825606297404
[2025-11-27 13:47:25] 2025-11-27 18:46:19,987 | INFO     | current memory leak: 18.18 B/s (using 396 data points, chi2=0.04)
[2025-11-27 13:47:25] 2025-11-27 18:46:19,987 | INFO     | could have reported an average CPU frequency of 2401 MHz (18 samples)
[2025-11-27 13:47:25] 2025-11-27 18:46:19,988 | INFO     | ..............................
[2025-11-27 13:47:25] 2025-11-27 18:46:19,988 | INFO     | . Timing measurements:
[2025-11-27 13:47:25] 2025-11-27 18:46:19,988 | INFO     | . get job = 0 s
[2025-11-27 13:47:25] 2025-11-27 18:46:19,988 | INFO     | . initial setup = 2 s
[2025-11-27 13:47:25] 2025-11-27 18:46:19,988 | INFO     | . payload setup = 7 s
[2025-11-27 13:47:25] 2025-11-27 18:46:19,988 | INFO     | . stage-in = 0 s
[2025-11-27 13:47:25] 2025-11-27 18:46:19,988 | INFO     | . payload execution = 26043 s
[2025-11-27 13:47:25] 2025-11-27 18:46:19,988 | INFO     | . stage-out = 3 s
[2025-11-27 13:47:25] 2025-11-27 18:46:19,988 | INFO     | . log creation = 0 s
[2025-11-27 13:47:25] 2025-11-27 18:46:19,989 | INFO     | ..............................
[2025-11-27 13:47:25] 2025-11-27 18:46:20,229 | INFO     | 
[2025-11-27 13:47:25] 2025-11-27 18:46:20,229 | INFO     | job summary report
[2025-11-27 13:47:25] 2025-11-27 18:46:20,229 | INFO     | --------------------------------------------------
[2025-11-27 13:47:25] 2025-11-27 18:46:20,230 | INFO     | PanDA job id: 6898214339
[2025-11-27 13:47:25] 2025-11-27 18:46:20,230 | INFO     | task id: 47556173
[2025-11-27 13:47:25] 2025-11-27 18:46:20,230 | INFO     | errors: (none)
[2025-11-27 13:47:25] 2025-11-27 18:46:20,230 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 13:47:25] 2025-11-27 18:46:20,230 | INFO     | pilot state: finished 
[2025-11-27 13:47:25] 2025-11-27 18:46:20,230 | INFO     | transexitcode: 0
[2025-11-27 13:47:25] 2025-11-27 18:46:20,231 | INFO     | exeerrorcode: 0
[2025-11-27 13:47:25] 2025-11-27 18:46:20,231 | INFO     | exeerrordiag: 
[2025-11-27 13:47:25] 2025-11-27 18:46:20,231 | INFO     | exitcode: 0
[2025-11-27 13:47:25] 2025-11-27 18:46:20,231 | INFO     | exitmsg: OK
[2025-11-27 13:47:25] 2025-11-27 18:46:20,231 | INFO     | cpuconsumptiontime: 298772 s
[2025-11-27 13:47:25] 2025-11-27 18:46:20,231 | INFO     | nevents: 1000
[2025-11-27 13:47:25] 2025-11-27 18:46:20,232 | INFO     | neventsw: 0
[2025-11-27 13:47:25] 2025-11-27 18:46:20,232 | INFO     | pid: 10127
[2025-11-27 13:47:25] 2025-11-27 18:46:20,232 | INFO     | pgrp: 10127
[2025-11-27 13:47:25] 2025-11-27 18:46:20,232 | INFO     | corecount: 12
[2025-11-27 13:47:25] 2025-11-27 18:46:20,232 | INFO     | event service: False
[2025-11-27 13:47:25] 2025-11-27 18:46:20,232 | INFO     | sizes: {0: 2284093, 1: 2284292, 6: 2284554, 12: 2284582, 26055: 2321931, 26058: 2330925, 26061: 2331109, 26068: 2331355}
[2025-11-27 13:47:25] 2025-11-27 18:46:20,233 | INFO     | --------------------------------------------------
[2025-11-27 13:47:25] 2025-11-27 18:46:20,233 | INFO     | 
[2025-11-27 13:47:25] 2025-11-27 18:46:20,233 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-27 13:47:25] 2025-11-27 18:46:20,260 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 13:47:25] 2025-11-27 18:46:20,260 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 13:47:25] 2025-11-27 18:46:20,260 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 13:47:25] 2025-11-27 18:46:20,261 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 13:47:25] 2025-11-27 18:46:20,261 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 13:47:25] 2025-11-27 18:46:20,261 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 13:47:25] 2025-11-27 18:46:20,261 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 13:47:25] 2025-11-27 18:46:20,261 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 13:47:25] 2025-11-27 18:46:20,262 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 13:47:25] 2025-11-27 18:46:20,262 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 13:47:25] 2025-11-27 18:46:20,262 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 13:47:25] 2025-11-27 18:46:20,262 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 13:47:25] 2025-11-27 18:46:20,262 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 13:47:25] 2025-11-27 18:46:20,262 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 13:47:25] 2025-11-27 18:46:20,263 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 13:47:25] 2025-11-27 18:46:20,263 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 13:47:25] 2025-11-27 18:46:20,263 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 13:47:25] 2025-11-27 18:46:20,263 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 13:47:25] 2025-11-27 18:46:20,263 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 13:47:25] 2025-11-27 18:46:20,263 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 13:47:25] 2025-11-27 18:46:20,264 | INFO     | job 6898214339 has completed (purged errors)
[2025-11-27 13:47:25] 2025-11-27 18:46:20,264 | INFO     | overall cleanup function is called
[2025-11-27 13:47:25] 2025-11-27 18:46:21,279 | INFO     | --- collectZombieJob: --- 10, [10127]
[2025-11-27 13:47:25] 2025-11-27 18:46:21,279 | INFO     | zombie collector waiting for pid 10127
[2025-11-27 13:47:25] 2025-11-27 18:46:21,279 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 13:47:25] 2025-11-27 18:46:21,279 | INFO     | collected zombie processes
[2025-11-27 13:47:25] 2025-11-27 18:46:21,279 | INFO     | will attempt to kill all subprocesses of pid=10127
[2025-11-27 13:47:25] 2025-11-27 18:46:21,371 | INFO     | process IDs to be killed: [10127] (in reverse order)
[2025-11-27 13:47:25] 2025-11-27 18:46:21,425 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 13:47:25] 2025-11-27 18:46:21,425 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 13:47:25] 2025-11-27 18:46:21,429 | INFO     | did not find any defunct processes belonging to 10127
[2025-11-27 13:47:25] 2025-11-27 18:46:21,432 | INFO     | did not find any defunct processes belonging to 10127
[2025-11-27 13:47:25] 2025-11-27 18:46:21,435 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 13:47:25] 2025-11-27 18:46:21,435 | INFO     | ready for new job
[2025-11-27 13:47:25] 2025-11-27 18:46:21,435 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 13:47:25] 2025-11-27 18:46:21,437 | INFO     | ***************************************
[2025-11-27 13:47:25] 2025-11-27 18:46:21,437 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 13:47:25] 2025-11-27 18:46:21,437 | INFO     | ***************************************
[2025-11-27 13:47:25] 2025-11-27 18:46:21,437 | INFO     | 
[2025-11-27 13:47:25] 2025-11-27 18:46:21,438 | INFO     | architecture information:
[2025-11-27 13:47:25] 2025-11-27 18:46:21,438 | INFO     | executing command: cat /etc/os-release
[2025-11-27 13:47:25] 2025-11-27 18:46:21,453 | INFO     | cat /etc/os-release:
[2025-11-27 13:47:25] NAME="CentOS Linux"
[2025-11-27 13:47:25] VERSION="7 (Core)"
[2025-11-27 13:47:25] ID="centos"
[2025-11-27 13:47:25] ID_LIKE="rhel fedora"
[2025-11-27 13:47:25] VERSION_ID="7"
[2025-11-27 13:47:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 13:47:25] ANSI_COLOR="0;31"
[2025-11-27 13:47:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 13:47:25] HOME_URL="https://www.centos.org/"
[2025-11-27 13:47:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 13:47:25] 
[2025-11-27 13:47:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 13:47:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 13:47:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 13:47:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 13:47:25] 
[2025-11-27 13:47:25] 2025-11-27 18:46:21,453 | INFO     | ***************************************
[2025-11-27 13:47:25] 2025-11-27 18:46:21,956 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-27 13:47:25] 2025-11-27 18:46:21,972 | INFO     | sufficient remaining disk space (28244443136 B)
[2025-11-27 13:47:25] 2025-11-27 18:46:21,972 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 13:47:25] 2025-11-27 18:46:21,973 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 13:47:25] 2025-11-27 18:46:21,973 | INFO     | update_server=False
[2025-11-27 13:47:25] 2025-11-27 18:46:21,973 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 13:47:25] 2025-11-27 18:46:21,973 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 13:47:25] 2025-11-27 18:46:22,067 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 13:47:25] 2025-11-27 18:46:22,067 | INFO     | aborting loop
[2025-11-27 13:47:25] 2025-11-27 18:46:22,290 | INFO     | all data control threads have been joined
[2025-11-27 13:47:25] 2025-11-27 18:46:22,479 | INFO     | all payload control threads have been joined
[2025-11-27 13:47:25] 2025-11-27 18:46:22,978 | INFO     | [job] retrieve thread has finished
[2025-11-27 13:47:25] 2025-11-27 18:46:22,979 | INFO     | [job] queue monitor thread has finished
[2025-11-27 13:47:25] 2025-11-27 18:46:23,073 | INFO     | [job] job monitor thread has finished
[2025-11-27 13:47:25] 2025-11-27 18:46:23,088 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 13:47:25] 2025-11-27 18:46:23,118 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 13:47:25] 2025-11-27 18:46:23,274 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 13:47:25] 2025-11-27 18:46:23,295 | INFO     | [data] control thread has finished
[2025-11-27 13:47:25] 2025-11-27 18:46:23,334 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 13:47:25] 2025-11-27 18:46:23,485 | INFO     | [payload] control thread has finished
[2025-11-27 13:47:25] 2025-11-27 18:46:23,611 | INFO     | [data] copytool_in thread has finished
[2025-11-27 13:47:25] 2025-11-27 18:46:23,617 | INFO     | all job control threads have been joined
[2025-11-27 13:47:25] 2025-11-27 18:46:23,696 | INFO     | [payload] validate_post thread has finished
[2025-11-27 13:47:25] 2025-11-27 18:46:23,736 | INFO     | [job] validate thread has finished
[2025-11-27 13:47:25] 2025-11-27 18:46:23,792 | INFO     | [payload] failed_post thread has finished
[2025-11-27 13:47:25] 2025-11-27 18:46:24,088 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 13:47:25] 2025-11-27 18:46:24,242 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 13:47:25] 2025-11-27 18:46:24,630 | INFO     | [job] control thread has finished
[2025-11-27 13:47:25] 2025-11-27 18:46:25,089 | INFO     | [data] copytool_out thread has finished
[2025-11-27 13:47:25] 2025-11-27 18:46:27,340 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 13:47:25] 2025-11-27 18:46:35,235 [wrapper] supervise_pilot (15 min periods counter: 30)
[2025-11-27 13:47:25] 2025-11-27 18:46:52,883 | INFO     | PID=3668 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-27 13:47:25] 2025-11-27 18:46:52,884 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 13:47:25] 2025-11-27 18:46:52,884 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 13:47:25] 2025-11-27 18:46:52,884 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 13:47:25] 2025-11-27 18:47:18,573 | INFO     | [monitor] cgroup control has ended
[2025-11-27 13:47:25] 2025-11-27 18:47:19,653 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140122074068800)>', '<ExcThread(monitor, started 140120825001728)>']
[2025-11-27 13:47:25] 2025-11-27 18:47:20,017 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 13:47:25] 2025-11-27 18:47:20,017 | INFO     | [monitor] control thread has ended
[2025-11-27 13:47:25] 2025-11-27 18:47:24,678 | INFO     | all workflow threads have been joined
[2025-11-27 13:47:25] 2025-11-27 18:47:24,680 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 13:47:25] 2025-11-27 18:47:24,681 | INFO     | traces error code: 0
[2025-11-27 13:47:25] 2025-11-27 18:47:24,682 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 13:47:25] 2025-11-27 18:47:24,767 [wrapper] ==== pilot stdout END ====
[2025-11-27 13:47:25] 2025-11-27 18:47:24,771 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 13:47:25] 2025-11-27 18:47:24,777 [wrapper] pilotpid: 3668
[2025-11-27 13:47:25] 2025-11-27 18:47:24,781 [wrapper] Pilot exit status: 0
[2025-11-27 13:47:25] 2025-11-27 18:47:24,796 [wrapper] pandaids: 6898214339 6898214339
[2025-11-27 13:47:25] 2025-11-27 18:47:24,844 [wrapper] cleanup supervisor_pilot 18013 3669
[2025-11-27 13:47:25] 2025-11-27 18:47:24,848 [wrapper] Test setup, not cleaning
[2025-11-27 13:47:25] 2025-11-27 18:47:24,852 [wrapper] apfmon messages muted
[2025-11-27 13:47:25] 2025-11-27 18:47:24,856 [wrapper] ==== wrapper stdout END ====
[2025-11-27 13:47:25] 2025-11-27 18:47:24,860 [wrapper] ==== wrapper stderr END ====
[2025-11-27 13:47:25]  *** Error codes and diagnostics ***
[2025-11-27 13:47:25]     "exeErrorCode": 0,
[2025-11-27 13:47:25]     "exeErrorDiag": "",
[2025-11-27 13:47:25]     "pilotErrorCode": 0,
[2025-11-27 13:47:25]     "pilotErrorDiag": "",
[2025-11-27 13:47:25]  *** Listing of results directory ***
[2025-11-27 13:47:25] total 1715572
[2025-11-27 13:47:25] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-27 13:47:25] -rw-r--r-- 1 boincer umatlas    576529 Nov 25 22:33 pilot3.tar.gz
[2025-11-27 13:47:25] -rwx------ 1 boincer umatlas     36292 Nov 25 23:28 runpilot2-wrapper.sh
[2025-11-27 13:47:25] -rw-r--r-- 1 boincer umatlas      5112 Nov 25 23:28 queuedata.json
[2025-11-27 13:47:25] -rw-r--r-- 1 boincer umatlas       100 Nov 27 00:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 13:47:25] -rwxr-xr-x 1 boincer umatlas      7986 Nov 27 00:57 run_atlas
[2025-11-27 13:47:25] -rw-r--r-- 1 boincer umatlas       105 Nov 27 00:57 job.xml
[2025-11-27 13:47:25] -rw-r--r-- 3 boincer umatlas 408914674 Nov 27 00:57 EVNT.47483658._003179.pool.root.1
[2025-11-27 13:47:25] -rw-r--r-- 3 boincer umatlas 408914674 Nov 27 00:57 ATLAS.root_0
[2025-11-27 13:47:25] -rw-r--r-- 2 boincer umatlas     15847 Nov 27 00:57 start_atlas.sh
[2025-11-27 13:47:25] drwxrwx--x 2 boincer umatlas      4096 Nov 27 00:57 shared
[2025-11-27 13:47:25] -rw-r--r-- 2 boincer umatlas    590105 Nov 27 00:57 input.tar.gz
[2025-11-27 13:47:25] -rw-r--r-- 1 boincer umatlas         0 Nov 27 00:57 boinc_lockfile
[2025-11-27 13:47:25] -rw-r--r-- 1 boincer umatlas      2785 Nov 27 06:31 pandaJob.out
[2025-11-27 13:47:25] -rw------- 1 boincer umatlas        57 Nov 27 06:31 setup.sh.local
[2025-11-27 13:47:25] -rw------- 1 boincer umatlas    991572 Nov 27 06:31 agis_schedconf.cvmfs.json
[2025-11-27 13:47:25] -rw-r--r-- 1 boincer umatlas       532 Nov 27 13:36 boinc_task_state.xml
[2025-11-27 13:47:25] -rw------- 1 boincer umatlas 923338757 Nov 27 13:45 HITS.47556173._001357.pool.root.1
[2025-11-27 13:47:25] -rw------- 1 boincer umatlas      1061 Nov 27 13:46 memory_monitor_summary.json
[2025-11-27 13:47:25] -rw------- 1 boincer umatlas   1516240 Nov 27 13:46 agis_ddmendpoints.agis.ALL.json
[2025-11-27 13:47:25] -rw------- 1 boincer umatlas   2173269 Nov 27 13:46 log.47556173._001357.job.log.tgz.1
[2025-11-27 13:47:25] -rw------- 1 boincer umatlas      8678 Nov 27 13:46 heartbeat.json
[2025-11-27 13:47:25] -rw------- 1 boincer umatlas        96 Nov 27 13:46 pilot_heartbeat.json
[2025-11-27 13:47:25] -rw-r--r-- 1 boincer umatlas      5956 Nov 27 13:47 init_data.xml
[2025-11-27 13:47:25] -rw-r--r-- 1 boincer umatlas      8192 Nov 27 13:47 boinc_mmap_file
[2025-11-27 13:47:25] -rw-r--r-- 1 boincer umatlas        29 Nov 27 13:47 wrapper_checkpoint.txt
[2025-11-27 13:47:25] -rw------- 1 boincer umatlas      4745 Nov 27 13:47 pilotlog.txt
[2025-11-27 13:47:25] -rw------- 1 boincer umatlas   3649099 Nov 27 13:47 log.47556173._001357.job.log.1
[2025-11-27 13:47:25] -rw------- 1 boincer umatlas       353 Nov 27 13:47 output.list
[2025-11-27 13:47:25] -rw-r--r-- 1 boincer umatlas       620 Nov 27 13:47 runtime_log
[2025-11-27 13:47:25] -rw------- 1 boincer umatlas   5847040 Nov 27 13:47 result.tar.gz
[2025-11-27 13:47:25] -rw-r--r-- 1 boincer umatlas      9430 Nov 27 13:47 runtime_log.err
[2025-11-27 13:47:25] -rw------- 1 boincer umatlas       795 Nov 27 13:47 3iCODmtJMi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmXwJKDmCI7H5n.diag
[2025-11-27 13:47:25] -rw-r--r-- 1 boincer umatlas     23473 Nov 27 13:47 stderr.txt
[2025-11-27 13:47:25] HITS file was successfully produced:
[2025-11-27 13:47:25] -rw------- 1 boincer umatlas 923338757 Nov 27 13:45 shared/HITS.pool.root.1
[2025-11-27 13:47:25]  *** Contents of shared directory: ***
[2025-11-27 13:47:25] total 1307348
[2025-11-27 13:47:25] -rw-r--r-- 3 boincer umatlas 408914674 Nov 27 00:57 ATLAS.root_0
[2025-11-27 13:47:25] -rw-r--r-- 2 boincer umatlas     15847 Nov 27 00:57 start_atlas.sh
[2025-11-27 13:47:25] -rw-r--r-- 2 boincer umatlas    590105 Nov 27 00:57 input.tar.gz
[2025-11-27 13:47:25] -rw------- 1 boincer umatlas 923338757 Nov 27 13:45 HITS.pool.root.1
[2025-11-27 13:47:25] -rw------- 1 boincer umatlas   5847040 Nov 27 13:47 result.tar.gz
13:47:26 (31363): run_atlas exited; CPU time 291868.339291
13:47:26 (31363): called boinc_finish(0)

</stderr_txt>
]]>

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