Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
03:12:48 (3269204): wrapper (7.7.26015): starting
03:12:48 (3269204): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 03:12:48] Arguments: --nthreads 8
[2025-11-27 03:12:48] Threads: 8
[2025-11-27 03:12:48] Checking for CVMFS
[2025-11-27 03:12:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 03:12:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 03:12:49] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 03:12:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 03:12:50] 2.13.2.0 7153 37020 237356 153354 3 289 40106634 40960000 41094 16776704 0 153415666 99.580 157597419 33010 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 03:12:50] CVMFS is ok
[2025-11-27 03:12:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 03:12:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 03:12:50] Further information can be found at the LHC@home message board.
[2025-11-27 03:12:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 03:12:50] Checking for apptainer binary...
[2025-11-27 03:12:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 03:12:50] Running /usr/bin/apptainer --version
[2025-11-27 03:12:50] apptainer version 1.4.4-1.el9
[2025-11-27 03:12:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 03:12:50] c-212-15.aglt2.org
[2025-11-27 03:12:50] apptainer works
[2025-11-27 03:12:50] Set ATHENA_PROC_NUMBER=8
[2025-11-27 03:12:50] Set ATHENA_CORE_NUMBER=8
[2025-11-27 03:12:51] Starting ATLAS job with PandaID=6897863643
[2025-11-27 03:12:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 14:35:25]  *** The last 200 lines of the pilot log: ***
[2025-11-27 14:35:25] 2025-11-27 18:31:21,342 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3140.237302083333
[2025-11-27 14:35:25] 2025-11-27 18:31:21,427 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6897863643/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 14:35:25] 2025-11-27 18:31:21,427 | INFO     | extracted standard info from prmon json
[2025-11-27 14:35:25] 2025-11-27 18:31:21,427 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 14:35:25] 2025-11-27 18:31:21,428 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 14:35:25] 2025-11-27 18:31:21,444 | INFO     | fitting pss+swap vs Time
[2025-11-27 14:35:25] 2025-11-27 18:31:21,445 | INFO     | sum of square deviations: 69001045623.91429
[2025-11-27 14:35:25] 2025-11-27 18:31:21,459 | INFO     | sum of deviations: 820155514527.6477
[2025-11-27 14:35:25] 2025-11-27 18:31:21,459 | INFO     | mean x: 1764249773.8844883
[2025-11-27 14:35:25] 2025-11-27 18:31:21,459 | INFO     | mean y: 2823939.4092409243
[2025-11-27 14:35:25] 2025-11-27 18:31:21,459 | INFO     | intersect: -20967281194.09954
[2025-11-27 14:35:25] 2025-11-27 18:31:21,460 | INFO     | chi2: 14.970329446216738
[2025-11-27 14:35:25] 2025-11-27 18:31:21,461 | INFO     | sum of square deviations: 67307251141.7504
[2025-11-27 14:35:25] 2025-11-27 18:31:21,476 | INFO     | sum of deviations: 1033791867953.396
[2025-11-27 14:35:25] 2025-11-27 18:31:21,477 | INFO     | mean x: 1764249621.3960066
[2025-11-27 14:35:25] 2025-11-27 18:31:21,477 | INFO     | mean y: 2843175.9983361065
[2025-11-27 14:35:25] 2025-11-27 18:31:21,477 | INFO     | intersect: -27094785693.110428
[2025-11-27 14:35:25] 2025-11-27 18:31:21,477 | INFO     | chi2: 11.335316357267631
[2025-11-27 14:35:25] 2025-11-27 18:31:21,477 | INFO     | current chi2=11.335316357267631 (change=24.281450197929598 %)
[2025-11-27 14:35:25] 2025-11-27 18:31:21,477 | INFO     | right removable region: 600
[2025-11-27 14:35:25] 2025-11-27 18:31:21,482 | INFO     | sum of square deviations: 67306739351.75038
[2025-11-27 14:35:25] 2025-11-27 18:31:21,499 | INFO     | sum of deviations: 579165421332.9175
[2025-11-27 14:35:25] 2025-11-27 18:31:21,500 | INFO     | mean x: 1764249926.3960066
[2025-11-27 14:35:25] 2025-11-27 18:31:21,500 | INFO     | mean y: 2845626.798668885
[2025-11-27 14:35:25] 2025-11-27 18:31:21,500 | INFO     | intersect: -15178287225.555723
[2025-11-27 14:35:25] 2025-11-27 18:31:21,500 | INFO     | chi2: 10.619860338257764
[2025-11-27 14:35:25] 2025-11-27 18:31:21,500 | INFO     | current chi2=10.619860338257764 (change=29.060610346543932 %)
[2025-11-27 14:35:25] 2025-11-27 18:31:21,501 | INFO     | sum of square deviations: 65640387091.92447
[2025-11-27 14:35:25] 2025-11-27 18:31:21,529 | INFO     | sum of deviations: 366221380173.9645
[2025-11-27 14:35:25] 2025-11-27 18:31:21,529 | INFO     | mean x: 1764250078.9077182
[2025-11-27 14:35:25] 2025-11-27 18:31:21,529 | INFO     | mean y: 2865117.2902684566
[2025-11-27 14:35:25] 2025-11-27 18:31:21,529 | INFO     | intersect: -9840253235.512661
[2025-11-27 14:35:25] 2025-11-27 18:31:21,530 | INFO     | chi2: 7.397605133306337
[2025-11-27 14:35:25] 2025-11-27 18:31:21,530 | INFO     | current chi2=7.397605133306337 (change=30.34178513010513 %)
[2025-11-27 14:35:25] 2025-11-27 18:31:21,535 | INFO     | sum of square deviations: 64001901101.262405
[2025-11-27 14:35:25] 2025-11-27 18:31:21,551 | INFO     | sum of deviations: 284310704897.90186
[2025-11-27 14:35:25] 2025-11-27 18:31:21,551 | INFO     | mean x: 1764250231.4128597
[2025-11-27 14:35:25] 2025-11-27 18:31:21,551 | INFO     | mean y: 2872722.6971235196
[2025-11-27 14:35:25] 2025-11-27 18:31:21,551 | INFO     | intersect: -7834319896.248112
[2025-11-27 14:35:25] 2025-11-27 18:31:21,552 | INFO     | chi2: 6.856744604077107
[2025-11-27 14:35:25] 2025-11-27 18:31:21,552 | INFO     | current chi2=6.856744604077107 (change=7.311292228806672 %)
[2025-11-27 14:35:25] 2025-11-27 18:31:21,558 | INFO     | left removable region: 30
[2025-11-27 14:35:25] 2025-11-27 18:31:21,558 | INFO     | sum of square deviations: 57418416336.3315
[2025-11-27 14:35:25] 2025-11-27 18:31:21,571 | INFO     | sum of deviations: 458669691188.91113
[2025-11-27 14:35:25] 2025-11-27 18:31:21,572 | INFO     | mean x: 1764250505.9315789
[2025-11-27 14:35:25] 2025-11-27 18:31:21,572 | INFO     | mean y: 2904269.510526316
[2025-11-27 14:35:25] 2025-11-27 18:31:21,572 | INFO     | intersect: -14090278482.09196
[2025-11-27 14:35:25] 2025-11-27 18:31:21,572 | INFO     | chi2: 2.414507217823232
[2025-11-27 14:35:25] 2025-11-27 18:31:21,587 | INFO     | current memory leak: 7.99 B/s (using 570 data points, chi2=2.41)
[2025-11-27 14:35:25] 2025-11-27 18:31:21,588 | INFO     | could have reported an average CPU frequency of 3229 MHz (24 samples)
[2025-11-27 14:35:25] 2025-11-27 18:31:21,588 | INFO     | ..............................
[2025-11-27 14:35:25] 2025-11-27 18:31:21,588 | INFO     | . Timing measurements:
[2025-11-27 14:35:25] 2025-11-27 18:31:21,588 | INFO     | . get job = 0 s
[2025-11-27 14:35:25] 2025-11-27 18:31:21,588 | INFO     | . initial setup = 6 s
[2025-11-27 14:35:25] 2025-11-27 18:31:21,588 | INFO     | . payload setup = 32 s
[2025-11-27 14:35:25] 2025-11-27 18:31:21,588 | INFO     | . stage-in = 0 s
[2025-11-27 14:35:25] 2025-11-27 18:31:21,588 | INFO     | . payload execution = 36950 s
[2025-11-27 14:35:25] 2025-11-27 18:31:21,588 | INFO     | . stage-out = 12 s
[2025-11-27 14:35:25] 2025-11-27 18:31:21,588 | INFO     | . log creation = 3 s
[2025-11-27 14:35:25] 2025-11-27 18:31:21,588 | INFO     | ..............................
[2025-11-27 14:35:25] 2025-11-27 18:31:22,053 | INFO     | 
[2025-11-27 14:35:25] 2025-11-27 18:31:22,053 | INFO     | job summary report
[2025-11-27 14:35:25] 2025-11-27 18:31:22,053 | INFO     | --------------------------------------------------
[2025-11-27 14:35:25] 2025-11-27 18:31:22,053 | INFO     | PanDA job id: 6897863643
[2025-11-27 14:35:25] 2025-11-27 18:31:22,053 | INFO     | task id: 47556161
[2025-11-27 14:35:25] 2025-11-27 18:31:22,053 | INFO     | errors: (none)
[2025-11-27 14:35:25] 2025-11-27 18:31:22,053 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 14:35:25] 2025-11-27 18:31:22,053 | INFO     | pilot state: finished 
[2025-11-27 14:35:25] 2025-11-27 18:31:22,053 | INFO     | transexitcode: 0
[2025-11-27 14:35:25] 2025-11-27 18:31:22,053 | INFO     | exeerrorcode: 0
[2025-11-27 14:35:25] 2025-11-27 18:31:22,054 | INFO     | exeerrordiag: 
[2025-11-27 14:35:25] 2025-11-27 18:31:22,054 | INFO     | exitcode: 0
[2025-11-27 14:35:25] 2025-11-27 18:31:22,054 | INFO     | exitmsg: OK
[2025-11-27 14:35:25] 2025-11-27 18:31:22,054 | INFO     | cpuconsumptiontime: 191534 s
[2025-11-27 14:35:25] 2025-11-27 18:31:22,054 | INFO     | nevents: 1000
[2025-11-27 14:35:25] 2025-11-27 18:31:22,054 | INFO     | neventsw: 0
[2025-11-27 14:35:25] 2025-11-27 18:31:22,054 | INFO     | pid: 3303262
[2025-11-27 14:35:25] 2025-11-27 18:31:22,054 | INFO     | pgrp: 3303262
[2025-11-27 14:35:25] 2025-11-27 18:31:22,054 | INFO     | corecount: 8
[2025-11-27 14:35:25] 2025-11-27 18:31:22,054 | INFO     | event service: False
[2025-11-27 14:35:25] 2025-11-27 18:31:22,054 | INFO     | sizes: {0: 2284038, 1: 2284293, 12: 2284293, 22: 2284583, 23: 2284611, 36984: 2326011, 36997: 2335005, 36999: 2335061, 37017: 2335307}
[2025-11-27 14:35:25] 2025-11-27 18:31:22,054 | INFO     | --------------------------------------------------
[2025-11-27 14:35:25] 2025-11-27 18:31:22,054 | INFO     | 
[2025-11-27 14:35:25] 2025-11-27 18:31:22,055 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-27 14:35:25] 2025-11-27 18:31:22,384 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 14:35:25] 2025-11-27 18:31:22,384 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 14:35:25] 2025-11-27 18:31:22,384 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 14:35:25] 2025-11-27 18:31:22,384 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 14:35:25] 2025-11-27 18:31:22,384 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 14:35:25] 2025-11-27 18:31:22,384 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 14:35:25] 2025-11-27 18:31:22,386 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 14:35:25] 2025-11-27 18:31:22,386 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 14:35:25] 2025-11-27 18:31:22,386 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 14:35:25] 2025-11-27 18:31:22,386 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 14:35:25] 2025-11-27 18:31:22,386 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 14:35:25] 2025-11-27 18:31:22,386 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 14:35:25] 2025-11-27 18:31:22,386 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 14:35:25] 2025-11-27 18:31:22,386 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 14:35:25] 2025-11-27 18:31:22,386 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 14:35:25] 2025-11-27 18:31:22,386 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 14:35:25] 2025-11-27 18:31:22,386 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 14:35:25] 2025-11-27 18:31:22,389 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 14:35:25] 2025-11-27 18:31:22,389 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 14:35:25] 2025-11-27 18:31:22,389 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 14:35:25] 2025-11-27 18:31:22,389 | INFO     | job 6897863643 has completed (purged errors)
[2025-11-27 14:35:25] 2025-11-27 18:31:22,389 | INFO     | overall cleanup function is called
[2025-11-27 14:35:25] 2025-11-27 18:31:23,457 | INFO     | --- collectZombieJob: --- 10, [3303262]
[2025-11-27 14:35:25] 2025-11-27 18:31:23,457 | INFO     | zombie collector waiting for pid 3303262
[2025-11-27 14:35:25] 2025-11-27 18:31:23,457 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 14:35:25] 2025-11-27 18:31:23,457 | INFO     | collected zombie processes
[2025-11-27 14:35:25] 2025-11-27 18:31:23,457 | INFO     | will attempt to kill all subprocesses of pid=3303262
[2025-11-27 14:35:25] 2025-11-27 18:31:24,533 | INFO     | PID=3282658 has CPU usage=10.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-27 14:35:25] 2025-11-27 18:31:24,533 | INFO     | .. there are 57 such processes running
[2025-11-27 14:35:25] 2025-11-27 18:31:25,039 | INFO     | process IDs to be killed: [3303262] (in reverse order)
[2025-11-27 14:35:25] 2025-11-27 18:31:25,344 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 14:35:25] 2025-11-27 18:31:25,344 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 14:35:25] 2025-11-27 18:31:25,456 | INFO     | did not find any defunct processes belonging to 3303262
[2025-11-27 14:35:25] 2025-11-27 18:31:25,533 | INFO     | did not find any defunct processes belonging to 3303262
[2025-11-27 14:35:25] 2025-11-27 18:31:25,537 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 14:35:25] 2025-11-27 18:31:25,538 | INFO     | ready for new job
[2025-11-27 14:35:25] 2025-11-27 18:31:25,538 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 14:35:25] 2025-11-27 18:31:25,549 | INFO     | ***************************************
[2025-11-27 14:35:25] 2025-11-27 18:31:25,549 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 14:35:25] 2025-11-27 18:31:25,549 | INFO     | ***************************************
[2025-11-27 14:35:25] 2025-11-27 18:31:25,549 | INFO     | 
[2025-11-27 14:35:25] 2025-11-27 18:31:25,563 | INFO     | architecture information:
[2025-11-27 14:35:25] 2025-11-27 18:31:25,564 | INFO     | executing command: cat /etc/os-release
[2025-11-27 14:35:25] 2025-11-27 18:31:25,691 | INFO     | cat /etc/os-release:
[2025-11-27 14:35:25] NAME="CentOS Linux"
[2025-11-27 14:35:25] VERSION="7 (Core)"
[2025-11-27 14:35:25] ID="centos"
[2025-11-27 14:35:25] ID_LIKE="rhel fedora"
[2025-11-27 14:35:25] VERSION_ID="7"
[2025-11-27 14:35:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 14:35:25] ANSI_COLOR="0;31"
[2025-11-27 14:35:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 14:35:25] HOME_URL="https://www.centos.org/"
[2025-11-27 14:35:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 14:35:25] 
[2025-11-27 14:35:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 14:35:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 14:35:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 14:35:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 14:35:25] 
[2025-11-27 14:35:25] 2025-11-27 18:31:25,691 | INFO     | ***************************************
[2025-11-27 14:35:25] 2025-11-27 18:31:26,195 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-27 14:35:25] 2025-11-27 18:31:26,293 | INFO     | sufficient remaining disk space (121040273408 B)
[2025-11-27 14:35:25] 2025-11-27 18:31:26,293 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 14:35:25] 2025-11-27 18:31:26,293 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 14:35:25] 2025-11-27 18:31:26,293 | INFO     | update_server=False
[2025-11-27 14:35:25] 2025-11-27 18:31:26,293 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 14:35:25] 2025-11-27 18:31:26,435 | INFO     | all payload control threads have been joined
[2025-11-27 14:35:25] 2025-11-27 18:31:26,561 | INFO     | all job control threads have been joined
[2025-11-27 14:35:25] 2025-11-27 18:31:26,756 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 14:35:25] 2025-11-27 18:31:26,756 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 14:35:25] 2025-11-27 18:31:26,756 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 14:35:25] 2025-11-27 18:31:26,756 | INFO     | will abort loop
[2025-11-27 14:35:25] 2025-11-27 18:31:26,778 | INFO     | all data control threads have been joined
[2025-11-27 14:35:25] 2025-11-27 18:31:27,056 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 14:35:25] 2025-11-27 18:31:27,299 | INFO     | [job] retrieve thread has finished
[2025-11-27 14:35:25] 2025-11-27 18:31:27,392 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 14:35:25] 2025-11-27 18:31:27,441 | INFO     | [payload] control thread has finished
[2025-11-27 14:35:25] 2025-11-27 18:31:27,544 | INFO     | [data] copytool_in thread has finished
[2025-11-27 14:35:25] 2025-11-27 18:31:27,544 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 14:35:25] 2025-11-27 18:31:27,549 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 14:35:25] 2025-11-27 18:31:27,568 | INFO     | [job] control thread has finished
[2025-11-27 14:35:25] 2025-11-27 18:31:27,763 | INFO     | [job] job monitor thread has finished
[2025-11-27 14:35:25] 2025-11-27 18:31:27,784 | INFO     | [data] control thread has finished
[2025-11-27 14:35:25] 2025-11-27 18:31:27,807 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 14:35:25] 2025-11-27 18:31:27,843 | INFO     | [payload] validate_post thread has finished
[2025-11-27 14:35:25] 2025-11-27 18:31:28,062 | INFO     | [job] queue monitor thread has finished
[2025-11-27 14:35:25] 2025-11-27 18:31:28,064 | INFO     | [payload] failed_post thread has finished
[2025-11-27 14:35:25] 2025-11-27 18:31:28,248 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 14:35:25] 2025-11-27 18:31:28,248 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 14:35:25] 2025-11-27 18:31:28,643 | INFO     | [job] validate thread has finished
[2025-11-27 14:35:25] 2025-11-27 18:31:29,401 | INFO     | [data] copytool_out thread has finished
[2025-11-27 14:35:25] 2025-11-27 18:31:31,820 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 14:35:25] 2025-11-27 18:31:52,048 | INFO     | [monitor] cgroup control has ended
[2025-11-27 14:35:25] 2025-11-27 18:31:52,113 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139664707290944)>', '<ExcThread(monitor, started 139664082073344)>']
[2025-11-27 14:35:25] 2025-11-27 18:31:57,171 | INFO     | all workflow threads have been joined
[2025-11-27 14:35:25] 2025-11-27 18:31:57,171 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 14:35:25] 2025-11-27 18:31:57,171 | INFO     | traces error code: 0
[2025-11-27 14:35:25] 2025-11-27 18:31:57,171 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 14:35:25] 2025-11-27 18:31:59,165 | INFO     | PID=3282658 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 14:35:25] 2025-11-27 18:31:59,165 | INFO     | .. there are 57 such processes running
[2025-11-27 14:35:25] 2025-11-27 18:31:59,165 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 14:35:25] 2025-11-27 18:31:59,165 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 14:35:25] 2025-11-27 18:31:59,165 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 14:35:25] 2025-11-27 18:31:59,165 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 14:35:25] 2025-11-27 18:31:59,165 | INFO     | [monitor] control thread has ended
[2025-11-27 14:35:25] 2025-11-27 18:32:00,542 [wrapper] ==== pilot stdout END ====
[2025-11-27 14:35:25] 2025-11-27 18:32:00,549 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 14:35:25] 2025-11-27 18:32:00,554 [wrapper] pilotpid: 3282658
[2025-11-27 14:35:25] 2025-11-27 18:32:00,560 [wrapper] Pilot exit status: 0
[2025-11-27 14:35:25] 2025-11-27 18:32:00,588 [wrapper] pandaids: 6897863643
[2025-11-27 14:35:25] 2025-11-27 18:32:00,732 [wrapper] cleanup supervisor_pilot 1043624 3282659
[2025-11-27 14:35:25] 2025-11-27 18:32:00,735 [wrapper] Test setup, not cleaning
[2025-11-27 14:35:25] 2025-11-27 18:32:00,748 [wrapper] apfmon messages muted
[2025-11-27 14:35:25] 2025-11-27 18:32:00,751 [wrapper] ==== wrapper stdout END ====
[2025-11-27 14:35:25] 2025-11-27 18:32:00,755 [wrapper] ==== wrapper stderr END ====
[2025-11-27 14:35:25]  *** Error codes and diagnostics ***
[2025-11-27 14:35:25]     "exeErrorCode": 0,
[2025-11-27 14:35:25]     "exeErrorDiag": "",
[2025-11-27 14:35:25]     "pilotErrorCode": 0,
[2025-11-27 14:35:25]     "pilotErrorDiag": "",
[2025-11-27 14:35:25]  *** Listing of results directory ***
[2025-11-27 14:35:25] total 1318760
[2025-11-27 14:35:25] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-27 14:35:25] -rwx------. 1 boincer umatlas     36292 Nov 25 12:01 runpilot2-wrapper.sh
[2025-11-27 14:35:25] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 12:02 queuedata.json
[2025-11-27 14:35:25] -rw-r--r--. 1 boincer umatlas       100 Nov 27 03:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 14:35:25] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 03:12 run_atlas
[2025-11-27 14:35:25] -rw-r--r--. 1 boincer umatlas       105 Nov 27 03:12 job.xml
[2025-11-27 14:35:25] -rw-r--r--. 2 boincer umatlas 409261806 Nov 27 03:12 EVNT.47483658._002330.pool.root.1
[2025-11-27 14:35:25] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 03:12 start_atlas.sh
[2025-11-27 14:35:25] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 03:12 shared
[2025-11-27 14:35:25] -rw-r--r--. 2 boincer umatlas    590103 Nov 27 03:12 input.tar.gz
[2025-11-27 14:35:25] -rw-r--r--. 1 boincer umatlas         0 Nov 27 03:12 boinc_lockfile
[2025-11-27 14:35:25] -rw-r--r--. 1 boincer umatlas      2786 Nov 27 03:12 pandaJob.out
[2025-11-27 14:35:25] -rw-------. 1 boincer umatlas        57 Nov 27 03:12 setup.sh.local
[2025-11-27 14:35:25] -rw-------. 1 boincer umatlas    991570 Nov 27 03:13 agis_schedconf.cvmfs.json
[2025-11-27 14:35:25] drwx------. 5 boincer umatlas      4096 Nov 27 03:13 pilot3
[2025-11-27 14:35:25] -rw-r--r--. 1 boincer umatlas       533 Nov 27 13:17 boinc_task_state.xml
[2025-11-27 14:35:25] -rw-------. 1 boincer umatlas 924877382 Nov 27 13:30 HITS.47556161._003122.pool.root.1
[2025-11-27 14:35:25] -rw-------. 1 boincer umatlas      1051 Nov 27 13:30 memory_monitor_summary.json
[2025-11-27 14:35:25] -rw-------. 1 boincer umatlas   1516240 Nov 27 13:30 agis_ddmendpoints.agis.ALL.json
[2025-11-27 14:35:25] -rw-------. 1 boincer umatlas   1829163 Nov 27 13:30 log.47556161._003122.job.log.tgz.1
[2025-11-27 14:35:25] -rw-------. 1 boincer umatlas      8581 Nov 27 13:31 heartbeat.json
[2025-11-27 14:35:25] -rw-------. 1 boincer umatlas        95 Nov 27 13:31 pilot_heartbeat.json
[2025-11-27 14:35:25] -rw-------. 1 boincer umatlas       823 Nov 27 13:31 pilotlog.txt
[2025-11-27 14:35:25] -rw-------. 1 boincer umatlas   4342502 Nov 27 13:32 log.47556161._003122.job.log.1
[2025-11-27 14:35:25] -rw-------. 1 boincer umatlas       353 Nov 27 13:32 output.list
[2025-11-27 14:35:25] -rw-r--r--. 1 boincer umatlas       620 Nov 27 13:32 runtime_log
[2025-11-27 14:35:25] -rw-------. 1 boincer umatlas   6195200 Nov 27 13:32 result.tar.gz
[2025-11-27 14:35:25] -rw-------. 1 boincer umatlas       660 Nov 27 13:32 xt3MDmraBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmTdJKDmrydS2m.diag
[2025-11-27 14:35:25] -rw-r--r--. 1 boincer umatlas      9343 Nov 27 13:32 runtime_log.err
[2025-11-27 14:35:25] -rw-r--r--. 1 boincer umatlas      6949 Nov 27 14:29 init_data.xml
[2025-11-27 14:35:25] -rw-r--r--. 1 boincer umatlas        29 Nov 27 14:35 wrapper_checkpoint.txt
[2025-11-27 14:35:25] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 14:35 boinc_mmap_file
[2025-11-27 14:35:25] -rw-r--r--. 1 boincer umatlas     21433 Nov 27 14:35 stderr.txt
[2025-11-27 14:35:25] HITS file was successfully produced:
[2025-11-27 14:35:25] -rw-------. 1 boincer umatlas 924877382 Nov 27 13:30 shared/HITS.pool.root.1
[2025-11-27 14:35:25]  *** Contents of shared directory: ***
[2025-11-27 14:35:25] total 1309532
[2025-11-27 14:35:25] -rw-r--r--. 2 boincer umatlas 409261806 Nov 27 03:12 ATLAS.root_0
[2025-11-27 14:35:25] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 03:12 start_atlas.sh
[2025-11-27 14:35:25] -rw-r--r--. 2 boincer umatlas    590103 Nov 27 03:12 input.tar.gz
[2025-11-27 14:35:25] -rw-------. 1 boincer umatlas 924877382 Nov 27 13:30 HITS.pool.root.1
[2025-11-27 14:35:25] -rw-------. 1 boincer umatlas   6195200 Nov 27 13:32 result.tar.gz
14:35:27 (3269204): run_atlas exited; CPU time 191706.940476
14:35:27 (3269204): called boinc_finish(0)

</stderr_txt>
]]>

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