Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
02:39:11 (3517411): wrapper (7.7.26015): starting
02:39:11 (3517411): wrapper: running run_atlas (--nthreads 9)
[2025-11-27 02:39:11] Arguments: --nthreads 9
[2025-11-27 02:39:11] Threads: 9
[2025-11-27 02:39:11] Checking for CVMFS
[2025-11-27 02:39:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 02:39:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 02:39:12] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 02:39:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 02:39:12] 2.13.3.0 9955 31156 313752 153353 0 260 23185869 32935937 29370 16776704 0 180826246 99.788 99344574 32990 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 02:39:12] CVMFS is ok
[2025-11-27 02:39:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 02:39:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 02:39:12] Further information can be found at the LHC@home message board.
[2025-11-27 02:39:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 02:39:12] Checking for apptainer binary...
[2025-11-27 02:39:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 02:39:12] Running /usr/bin/apptainer --version
[2025-11-27 02:39:12] apptainer version 1.4.4-1.el9
[2025-11-27 02:39:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 02:39:12] c-5-1.aglt2.org
[2025-11-27 02:39:12] apptainer works
[2025-11-27 02:39:12] Set ATHENA_PROC_NUMBER=9
[2025-11-27 02:39:12] Set ATHENA_CORE_NUMBER=9
[2025-11-27 02:39:12] Starting ATLAS job with PandaID=6897510396
[2025-11-27 02:39:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 07:12:18]  *** The last 200 lines of the pilot log: ***
[2025-11-28 07:12:19] 2025-11-28 09:32:25,563 | INFO     | time since job start (93169s) is within the limit (172800.0s)
[2025-11-28 07:12:19] 2025-11-28 09:32:27,573 | INFO     | time since job start (93171s) is within the limit (172800.0s)
[2025-11-28 07:12:19] 2025-11-28 09:32:27,579 | INFO     | monitor loop #5960: job 0:6897510396 is in state 'finished'
[2025-11-28 07:12:19] 2025-11-28 09:32:27,579 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 07:12:19] 2025-11-28 09:32:29,631 | INFO     | time since job start (93173s) is within the limit (172800.0s)
[2025-11-28 07:12:19] 2025-11-28 09:32:30,087 | INFO     | monitor loop #5961: job 0:6897510396 is in state 'finished'
[2025-11-28 07:12:19] 2025-11-28 09:32:30,087 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 07:12:19] 2025-11-28 09:32:31,642 | INFO     | time since job start (93175s) is within the limit (172800.0s)
[2025-11-28 07:12:19] 2025-11-28 09:32:32,605 | INFO     | monitor loop #5962: job 0:6897510396 is in state 'finished'
[2025-11-28 07:12:19] 2025-11-28 09:32:32,605 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 07:12:19] 2025-11-28 09:32:33,722 | INFO     | time since job start (93177s) is within the limit (172800.0s)
[2025-11-28 07:12:19] 2025-11-28 09:32:35,293 | INFO     | monitor loop #5963: job 0:6897510396 is in state 'finished'
[2025-11-28 07:12:19] 2025-11-28 09:32:35,293 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 07:12:19] 2025-11-28 09:32:35,748 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-28 07:12:19] 2025-11-28 09:32:35,762 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.038525000001
[2025-11-28 07:12:19] 2025-11-28 09:32:35,775 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6897510396/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 07:12:19] 2025-11-28 09:32:35,776 | INFO     | extracted standard info from prmon json
[2025-11-28 07:12:19] 2025-11-28 09:32:35,776 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 07:12:19] 2025-11-28 09:32:35,776 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 07:12:19] 2025-11-28 09:32:35,847 | INFO     | fitting pss+swap vs Time
[2025-11-28 07:12:19] 2025-11-28 09:32:35,850 | INFO     | sum of square deviations: 1101944665642.3257
[2025-11-28 07:12:19] 2025-11-28 09:32:36,968 | INFO     | sum of deviations: -3638104061501.1445
[2025-11-28 07:12:19] 2025-11-28 09:32:36,969 | INFO     | mean x: 1764275734.6474442
[2025-11-28 07:12:19] 2025-11-28 09:32:36,969 | INFO     | mean y: 3027124.1428571427
[2025-11-28 07:12:19] 2025-11-28 09:32:36,969 | INFO     | intersect: 5827837494.350837
[2025-11-28 07:12:19] 2025-11-28 09:32:36,971 | INFO     | chi2: 41.69065338803594
[2025-11-28 07:12:19] 2025-11-28 09:32:36,994 | INFO     | sum of square deviations: 1091149397273.2208
[2025-11-28 07:12:19] 2025-11-28 09:32:37,362 | INFO     | sum of deviations: -2982915053536.851
[2025-11-28 07:12:19] 2025-11-28 09:32:37,374 | INFO     | mean x: 1764275582.1512163
[2025-11-28 07:12:19] 2025-11-28 09:32:37,374 | INFO     | mean y: 3036379.516765286
[2025-11-28 07:12:19] 2025-11-28 09:32:37,374 | INFO     | intersect: 4826101127.330206
[2025-11-28 07:12:19] 2025-11-28 09:32:37,380 | INFO     | chi2: 36.797981324565555
[2025-11-28 07:12:19] 2025-11-28 09:32:37,380 | INFO     | current chi2=36.797981324565555 (change=11.735656953926384 %)
[2025-11-28 07:12:19] 2025-11-28 09:32:37,380 | INFO     | right removable region: 1520
[2025-11-28 07:12:19] 2025-11-28 09:32:37,382 | INFO     | sum of square deviations: 1091148329163.2202
[2025-11-28 07:12:19] 2025-11-28 09:32:37,656 | INFO     | sum of deviations: -4159288136202.9746
[2025-11-28 07:12:19] 2025-11-28 09:32:37,656 | INFO     | mean x: 1764275887.1512163
[2025-11-28 07:12:19] 2025-11-28 09:32:37,656 | INFO     | mean y: 3034483.3911900064
[2025-11-28 07:12:19] 2025-11-28 09:32:37,656 | INFO     | intersect: 6728180433.112341
[2025-11-28 07:12:19] 2025-11-28 09:32:37,658 | INFO     | chi2: 38.89063831828504
[2025-11-28 07:12:19] 2025-11-28 09:32:37,673 | INFO     | current chi2=38.89063831828504 (change=6.716169793957763 %)
[2025-11-28 07:12:19] 2025-11-28 09:32:37,673 | INFO     | left removable region: 10
[2025-11-28 07:12:19] 2025-11-28 09:32:37,675 | INFO     | sum of square deviations: 1067646736818.3019
[2025-11-28 07:12:19] 2025-11-28 09:32:37,977 | INFO     | sum of deviations: -3490554712501.2246
[2025-11-28 07:12:19] 2025-11-28 09:32:37,978 | INFO     | mean x: 1764275856.6569536
[2025-11-28 07:12:19] 2025-11-28 09:32:37,978 | INFO     | mean y: 3047299.4165562913
[2025-11-28 07:12:19] 2025-11-28 09:32:37,978 | INFO     | intersect: 5771155038.834598
[2025-11-28 07:12:19] 2025-11-28 09:32:37,980 | INFO     | chi2: 32.86374294895198
[2025-11-28 07:12:19] 2025-11-28 09:32:37,981 | INFO     | current memory leak: -3.27 B/s (using 1510 data points, chi2=32.86)
[2025-11-28 07:12:19] 2025-11-28 09:32:37,982 | INFO     | could have reported an average CPU frequency of 2600 MHz (54 samples)
[2025-11-28 07:12:19] 2025-11-28 09:32:37,982 | INFO     | ..............................
[2025-11-28 07:12:19] 2025-11-28 09:32:37,982 | INFO     | . Timing measurements:
[2025-11-28 07:12:19] 2025-11-28 09:32:37,982 | INFO     | . get job = 0 s
[2025-11-28 07:12:19] 2025-11-28 09:32:37,982 | INFO     | . initial setup = 3 s
[2025-11-28 07:12:19] 2025-11-28 09:32:37,982 | INFO     | . payload setup = 12 s
[2025-11-28 07:12:19] 2025-11-28 09:32:37,982 | INFO     | . stage-in = 0 s
[2025-11-28 07:12:19] 2025-11-28 09:32:37,983 | INFO     | . payload execution = 93050 s
[2025-11-28 07:12:19] 2025-11-28 09:32:37,983 | INFO     | . stage-out = 30 s
[2025-11-28 07:12:19] 2025-11-28 09:32:37,983 | INFO     | . log creation = 10 s
[2025-11-28 07:12:19] 2025-11-28 09:32:37,983 | INFO     | ..............................
[2025-11-28 07:12:19] 2025-11-28 09:32:37,984 | INFO     | monitor loop #5964: job 0:6897510396 is in state 'finished'
[2025-11-28 07:12:19] 2025-11-28 09:32:37,984 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 07:12:19] 2025-11-28 09:32:40,096 | INFO     | 
[2025-11-28 07:12:19] 2025-11-28 09:32:40,101 | INFO     | job summary report
[2025-11-28 07:12:19] 2025-11-28 09:32:40,101 | INFO     | --------------------------------------------------
[2025-11-28 07:12:19] 2025-11-28 09:32:40,101 | INFO     | PanDA job id: 6897510396
[2025-11-28 07:12:19] 2025-11-28 09:32:40,102 | INFO     | task id: 47556161
[2025-11-28 07:12:19] 2025-11-28 09:32:40,102 | INFO     | errors: (none)
[2025-11-28 07:12:19] 2025-11-28 09:32:40,102 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 07:12:19] 2025-11-28 09:32:40,102 | INFO     | pilot state: finished 
[2025-11-28 07:12:19] 2025-11-28 09:32:40,102 | INFO     | transexitcode: 0
[2025-11-28 07:12:19] 2025-11-28 09:32:40,102 | INFO     | exeerrorcode: 0
[2025-11-28 07:12:19] 2025-11-28 09:32:40,102 | INFO     | exeerrordiag: 
[2025-11-28 07:12:19] 2025-11-28 09:32:40,102 | INFO     | exitcode: 0
[2025-11-28 07:12:19] 2025-11-28 09:32:40,102 | INFO     | exitmsg: OK
[2025-11-28 07:12:19] 2025-11-28 09:32:40,102 | INFO     | cpuconsumptiontime: 297488 s
[2025-11-28 07:12:19] 2025-11-28 09:32:40,103 | INFO     | nevents: 1000
[2025-11-28 07:12:19] 2025-11-28 09:32:40,103 | INFO     | neventsw: 0
[2025-11-28 07:12:19] 2025-11-28 09:32:40,103 | INFO     | pid: 3529666
[2025-11-28 07:12:19] 2025-11-28 09:32:40,103 | INFO     | pgrp: 3529666
[2025-11-28 07:12:19] 2025-11-28 09:32:40,103 | INFO     | corecount: 9
[2025-11-28 07:12:19] 2025-11-28 09:32:40,103 | INFO     | event service: False
[2025-11-28 07:12:19] 2025-11-28 09:32:40,103 | INFO     | sizes: {0: 2284038, 1: 2284293, 2: 2284321, 12: 2284583, 13: 2284611, 93065: 2354502, 93097: 2363524, 93099: 2363580, 93160: 2363826}
[2025-11-28 07:12:19] 2025-11-28 09:32:40,103 | INFO     | --------------------------------------------------
[2025-11-28 07:12:19] 2025-11-28 09:32:40,103 | INFO     | 
[2025-11-28 07:12:19] 2025-11-28 09:32:40,104 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-28 07:12:19] 2025-11-28 09:32:40,339 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 07:12:19] 2025-11-28 09:32:40,340 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 07:12:19] 2025-11-28 09:32:40,340 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 07:12:19] 2025-11-28 09:32:40,340 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 07:12:19] 2025-11-28 09:32:40,340 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 07:12:19] 2025-11-28 09:32:40,340 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 07:12:19] 2025-11-28 09:32:40,340 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 07:12:19] 2025-11-28 09:32:40,340 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 07:12:19] 2025-11-28 09:32:40,340 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 07:12:19] 2025-11-28 09:32:40,340 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 07:12:19] 2025-11-28 09:32:40,341 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 07:12:19] 2025-11-28 09:32:40,341 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 07:12:19] 2025-11-28 09:32:40,341 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 07:12:19] 2025-11-28 09:32:40,341 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 07:12:19] 2025-11-28 09:32:40,341 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 07:12:19] 2025-11-28 09:32:40,341 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 07:12:19] 2025-11-28 09:32:40,341 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 07:12:19] 2025-11-28 09:32:40,341 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 07:12:19] 2025-11-28 09:32:40,341 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 07:12:19] 2025-11-28 09:32:40,342 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 07:12:19] 2025-11-28 09:32:40,342 | INFO     | job 6897510396 has completed (purged errors)
[2025-11-28 07:12:19] 2025-11-28 09:32:40,342 | INFO     | overall cleanup function is called
[2025-11-28 07:12:19] 2025-11-28 09:32:41,559 | INFO     | --- collectZombieJob: --- 10, [3529666]
[2025-11-28 07:12:19] 2025-11-28 09:32:41,559 | INFO     | zombie collector waiting for pid 3529666
[2025-11-28 07:12:19] 2025-11-28 09:32:41,559 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 07:12:19] 2025-11-28 09:32:41,559 | INFO     | collected zombie processes
[2025-11-28 07:12:19] 2025-11-28 09:32:41,559 | INFO     | will attempt to kill all subprocesses of pid=3529666
[2025-11-28 07:12:19] 2025-11-28 09:32:41,608 | INFO     | PID=3521079 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 07:12:19] 2025-11-28 09:32:41,608 | INFO     | .. there are 44 such processes running
[2025-11-28 07:12:19] 2025-11-28 09:32:44,574 | INFO     | process IDs to be killed: [3529666] (in reverse order)
[2025-11-28 07:12:19] 2025-11-28 09:32:45,010 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 07:12:19] 2025-11-28 09:32:45,010 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 07:12:19] 2025-11-28 09:32:45,044 | INFO     | did not find any defunct processes belonging to 3529666
[2025-11-28 07:12:19] 2025-11-28 09:32:45,066 | INFO     | did not find any defunct processes belonging to 3529666
[2025-11-28 07:12:19] 2025-11-28 09:32:45,071 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 07:12:19] 2025-11-28 09:32:45,071 | INFO     | ready for new job
[2025-11-28 07:12:19] 2025-11-28 09:32:45,071 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 07:12:19] 2025-11-28 09:32:45,086 | INFO     | ***************************************
[2025-11-28 07:12:19] 2025-11-28 09:32:45,087 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 07:12:19] 2025-11-28 09:32:45,087 | INFO     | ***************************************
[2025-11-28 07:12:19] 2025-11-28 09:32:45,087 | INFO     | 
[2025-11-28 07:12:19] 2025-11-28 09:32:45,089 | INFO     | architecture information:
[2025-11-28 07:12:19] 2025-11-28 09:32:45,089 | INFO     | executing command: cat /etc/os-release
[2025-11-28 07:12:19] 2025-11-28 09:32:45,258 | INFO     | cat /etc/os-release:
[2025-11-28 07:12:19] NAME="CentOS Linux"
[2025-11-28 07:12:19] VERSION="7 (Core)"
[2025-11-28 07:12:19] ID="centos"
[2025-11-28 07:12:19] ID_LIKE="rhel fedora"
[2025-11-28 07:12:19] VERSION_ID="7"
[2025-11-28 07:12:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 07:12:19] ANSI_COLOR="0;31"
[2025-11-28 07:12:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 07:12:19] HOME_URL="https://www.centos.org/"
[2025-11-28 07:12:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 07:12:19] 
[2025-11-28 07:12:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 07:12:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 07:12:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 07:12:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 07:12:19] 
[2025-11-28 07:12:19] 2025-11-28 09:32:45,260 | INFO     | ***************************************
[2025-11-28 07:12:19] 2025-11-28 09:32:45,792 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-28 07:12:19] 2025-11-28 09:32:46,059 | INFO     | sufficient remaining disk space (71480377344 B)
[2025-11-28 07:12:19] 2025-11-28 09:32:46,059 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 07:12:19] 2025-11-28 09:32:46,060 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 07:12:19] 2025-11-28 09:32:46,060 | INFO     | update_server=False
[2025-11-28 07:12:19] 2025-11-28 09:32:46,060 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 07:12:19] 2025-11-28 09:32:46,061 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 07:12:19] 2025-11-28 09:32:46,070 | INFO     | all data control threads have been joined
[2025-11-28 07:12:19] 2025-11-28 09:32:46,699 | INFO     | all job control threads have been joined
[2025-11-28 07:12:19] 2025-11-28 09:32:46,707 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 07:12:19] 2025-11-28 09:32:46,707 | INFO     | aborting loop
[2025-11-28 07:12:19] 2025-11-28 09:32:47,066 | INFO     | [job] retrieve thread has finished
[2025-11-28 07:12:19] 2025-11-28 09:32:47,076 | INFO     | all payload control threads have been joined
[2025-11-28 07:12:19] 2025-11-28 09:32:47,091 | INFO     | [data] control thread has finished
[2025-11-28 07:12:19] 2025-11-28 09:32:47,551 | INFO     | [payload] failed_post thread has finished
[2025-11-28 07:12:19] 2025-11-28 09:32:47,705 | INFO     | [job] control thread has finished
[2025-11-28 07:12:19] 2025-11-28 09:32:47,713 | INFO     | [job] job monitor thread has finished
[2025-11-28 07:12:19] 2025-11-28 09:32:48,068 | INFO     | [data] copytool_out thread has finished
[2025-11-28 07:12:19] 2025-11-28 09:32:48,094 | INFO     | [payload] control thread has finished
[2025-11-28 07:12:19] 2025-11-28 09:32:48,130 | INFO     | [payload] validate_post thread has finished
[2025-11-28 07:12:19] 2025-11-28 09:32:48,343 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 07:12:19] 2025-11-28 09:32:48,361 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 07:12:19] 2025-11-28 09:32:48,439 | INFO     | [job] validate thread has finished
[2025-11-28 07:12:19] 2025-11-28 09:32:48,439 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 07:12:19] 2025-11-28 09:32:48,440 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 07:12:19] 2025-11-28 09:32:48,446 | INFO     | [data] copytool_in thread has finished
[2025-11-28 07:12:19] 2025-11-28 09:32:48,850 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 07:12:19] 2025-11-28 09:32:49,307 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 07:12:19] 2025-11-28 09:32:49,902 | INFO     | [job] queue monitor thread has finished
[2025-11-28 07:12:19] 2025-11-28 09:32:53,326 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 07:12:19] 2025-11-28 09:33:16,447 | INFO     | PID=3521079 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 07:12:19] 2025-11-28 09:33:16,447 | INFO     | .. there are 44 such processes running
[2025-11-28 07:12:19] 2025-11-28 09:33:16,448 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 07:12:19] 2025-11-28 09:33:16,448 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 07:12:19] 2025-11-28 09:33:16,448 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 07:12:19] 2025-11-28 09:33:21,451 | INFO     | [monitor] cgroup control has ended
[2025-11-28 07:12:19] 2025-11-28 09:33:21,791 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140586056431424)>', '<ExcThread(monitor, started 140585344165632)>']
[2025-11-28 07:12:19] 2025-11-28 09:33:22,544 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 07:12:19] 2025-11-28 09:33:22,544 | INFO     | [monitor] control thread has ended
[2025-11-28 07:12:19] 2025-11-28 09:33:26,854 | INFO     | all workflow threads have been joined
[2025-11-28 07:12:19] 2025-11-28 09:33:26,854 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 07:12:19] 2025-11-28 09:33:26,854 | INFO     | traces error code: 0
[2025-11-28 07:12:19] 2025-11-28 09:33:26,855 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 07:12:19] 2025-11-28 09:33:28,295 [wrapper] ==== pilot stdout END ====
[2025-11-28 07:12:19] 2025-11-28 09:33:28,333 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 07:12:19] 2025-11-28 09:33:28,420 [wrapper] pilotpid: 3521079
[2025-11-28 07:12:19] 2025-11-28 09:33:28,586 [wrapper] Pilot exit status: 0
[2025-11-28 07:12:19] 2025-11-28 09:33:28,766 [wrapper] pandaids: 6897510396
[2025-11-28 07:12:19] 2025-11-28 09:33:29,539 [wrapper] cleanup supervisor_pilot 3920627 3521080
[2025-11-28 07:12:19] 2025-11-28 09:33:29,619 [wrapper] Test setup, not cleaning
[2025-11-28 07:12:19] 2025-11-28 09:33:29,633 [wrapper] apfmon messages muted
[2025-11-28 07:12:19] 2025-11-28 09:33:29,650 [wrapper] ==== wrapper stdout END ====
[2025-11-28 07:12:19] 2025-11-28 09:33:29,653 [wrapper] ==== wrapper stderr END ====
[2025-11-28 07:12:19]  *** Error codes and diagnostics ***
[2025-11-28 07:12:19]     "exeErrorCode": 0,
[2025-11-28 07:12:19]     "exeErrorDiag": "",
[2025-11-28 07:12:19]     "pilotErrorCode": 0,
[2025-11-28 07:12:19]     "pilotErrorDiag": "",
[2025-11-28 07:12:19]  *** Listing of results directory ***
[2025-11-28 07:12:19] total 1319844
[2025-11-28 07:12:19] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-28 07:12:19] -rwx------. 1 boincer umatlas     36292 Nov 25 12:01 runpilot2-wrapper.sh
[2025-11-28 07:12:19] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 12:02 queuedata.json
[2025-11-28 07:12:19] -rw-r--r--. 1 boincer umatlas       100 Nov 27 02:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 07:12:19] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 02:39 run_atlas
[2025-11-28 07:12:19] -rw-r--r--. 1 boincer umatlas       105 Nov 27 02:39 job.xml
[2025-11-28 07:12:19] -rw-r--r--. 2 boincer umatlas 408450733 Nov 27 02:39 EVNT.47483658._002292.pool.root.1
[2025-11-28 07:12:19] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 02:39 start_atlas.sh
[2025-11-28 07:12:19] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 02:39 shared
[2025-11-28 07:12:19] -rw-r--r--. 2 boincer umatlas    590109 Nov 27 02:39 input.tar.gz
[2025-11-28 07:12:19] -rw-r--r--. 1 boincer umatlas         0 Nov 27 02:39 boinc_lockfile
[2025-11-28 07:12:19] -rw-r--r--. 1 boincer umatlas      2786 Nov 27 02:39 pandaJob.out
[2025-11-28 07:12:19] -rw-------. 1 boincer umatlas        57 Nov 27 02:39 setup.sh.local
[2025-11-28 07:12:19] -rw-------. 1 boincer umatlas    991570 Nov 27 02:39 agis_schedconf.cvmfs.json
[2025-11-28 07:12:19] drwx------. 5 boincer umatlas      4096 Nov 27 02:39 pilot3
[2025-11-28 07:12:19] -rw-r--r--. 1 boincer umatlas       533 Nov 28 01:47 boinc_task_state.xml
[2025-11-28 07:12:19] -rw-------. 1 boincer umatlas 909346039 Nov 28 04:23 HITS.47556161._002758.pool.root.1
[2025-11-28 07:12:19] -rw-------. 1 boincer umatlas      1062 Nov 28 04:31 memory_monitor_summary.json
[2025-11-28 07:12:19] -rw-------. 1 boincer umatlas   1516240 Nov 28 04:31 agis_ddmendpoints.agis.ALL.json
[2025-11-28 07:12:19] -rw-------. 1 boincer umatlas   2661478 Nov 28 04:31 log.47556161._002758.job.log.tgz.1
[2025-11-28 07:12:19] -rw-------. 1 boincer umatlas        95 Nov 28 04:32 pilot_heartbeat.json
[2025-11-28 07:12:19] -rw-------. 1 boincer umatlas      8624 Nov 28 04:32 heartbeat.json
[2025-11-28 07:12:19] -rw-------. 1 boincer umatlas      4824 Nov 28 04:33 pilotlog.txt
[2025-11-28 07:12:19] -rw-------. 1 boincer umatlas  12238825 Nov 28 04:33 log.47556161._002758.job.log.1
[2025-11-28 07:12:19] -rw-------. 1 boincer umatlas       353 Nov 28 04:33 output.list
[2025-11-28 07:12:19] -rw-r--r--. 1 boincer umatlas       620 Nov 28 04:33 runtime_log
[2025-11-28 07:12:19] -rw-------. 1 boincer umatlas  14919680 Nov 28 04:33 result.tar.gz
[2025-11-28 07:12:19] -rw-------. 1 boincer umatlas       658 Nov 28 04:33 VmILDmJbBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmNgJKDm1W2Qwn.diag
[2025-11-28 07:12:19] -rw-r--r--. 1 boincer umatlas      9328 Nov 28 04:33 runtime_log.err
[2025-11-28 07:12:19] -rw-r--r--. 1 boincer umatlas      6661 Nov 28 07:12 init_data.xml
[2025-11-28 07:12:19] -rw-r--r--. 1 boincer umatlas      8192 Nov 28 07:12 boinc_mmap_file
[2025-11-28 07:12:19] -rw-r--r--. 1 boincer umatlas        29 Nov 28 07:12 wrapper_checkpoint.txt
[2025-11-28 07:12:19] -rw-r--r--. 1 boincer umatlas     21869 Nov 28 07:12 stderr.txt
[2025-11-28 07:12:19] HITS file was successfully produced:
[2025-11-28 07:12:19] -rw-------. 1 boincer umatlas 909346039 Nov 28 04:23 shared/HITS.pool.root.1
[2025-11-28 07:12:19]  *** Contents of shared directory: ***
[2025-11-28 07:12:19] total 1302092
[2025-11-28 07:12:19] -rw-r--r--. 2 boincer umatlas 408450733 Nov 27 02:39 ATLAS.root_0
[2025-11-28 07:12:19] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 02:39 start_atlas.sh
[2025-11-28 07:12:19] -rw-r--r--. 2 boincer umatlas    590109 Nov 27 02:39 input.tar.gz
[2025-11-28 07:12:19] -rw-------. 1 boincer umatlas 909346039 Nov 28 04:23 HITS.pool.root.1
[2025-11-28 07:12:19] -rw-------. 1 boincer umatlas  14919680 Nov 28 04:33 result.tar.gz
07:12:21 (3517411): run_atlas exited; CPU time 300338.305816
07:12:21 (3517411): called boinc_finish(0)

</stderr_txt>
]]>

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