Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
00:39:48 (12156): wrapper (7.7.26015): starting
00:39:48 (12156): wrapper: running run_atlas (--nthreads 12)
[2025-11-27 00:39:48] Arguments: --nthreads 12
[2025-11-27 00:39:48] Threads: 12
[2025-11-27 00:39:48] Checking for CVMFS
[2025-11-27 00:39:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:39:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:39:48] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:39:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:39:48] 2.11.2.0 3165 74334 95732 153349 0 82 20148121 20275201 1 130560 0 31252517 99.917 4016814 36963 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 00:39:48] CVMFS is ok
[2025-11-27 00:39:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:39:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:39:48] Further information can be found at the LHC@home message board.
[2025-11-27 00:39:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:39:48] Checking for apptainer binary...
[2025-11-27 00:39:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:39:48] Running /usr/bin/apptainer --version
[2025-11-27 00:39:48] apptainer version 1.3.2-1.el7
[2025-11-27 00:39:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:39:50] c-115-40.aglt2.org
[2025-11-27 00:39:50] apptainer works
[2025-11-27 00:39:50] Set ATHENA_PROC_NUMBER=12
[2025-11-27 00:39:50] Set ATHENA_CORE_NUMBER=12
[2025-11-27 00:39:50] Starting ATLAS job with PandaID=6897394895
[2025-11-27 00:39:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 06:45:07]  *** The last 200 lines of the pilot log: ***
[2025-11-27 06:45:07] 2025-11-27 11:44:34,726 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 06:45:07] 2025-11-27 11:44:35,231 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-27 06:45:07] 2025-11-27 11:44:35,234 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1729.0833333333333
[2025-11-27 06:45:07] 2025-11-27 11:44:35,237 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6897394895/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 06:45:07] 2025-11-27 11:44:35,237 | INFO     | extracted standard info from prmon json
[2025-11-27 06:45:07] 2025-11-27 11:44:35,237 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 06:45:07] 2025-11-27 11:44:35,237 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 06:45:07] 2025-11-27 11:44:35,244 | INFO     | fitting pss+swap vs Time
[2025-11-27 06:45:07] 2025-11-27 11:44:35,245 | INFO     | sum of square deviations: 14227528783.198273
[2025-11-27 06:45:07] 2025-11-27 11:44:35,247 | INFO     | sum of deviations: 282310859735.5533
[2025-11-27 06:45:07] 2025-11-27 11:44:35,247 | INFO     | mean x: 1764232923.8184357
[2025-11-27 06:45:07] 2025-11-27 11:44:35,247 | INFO     | mean y: 3956136.9162011174
[2025-11-27 06:45:07] 2025-11-27 11:44:35,247 | INFO     | intersect: -35002974517.48728
[2025-11-27 06:45:07] 2025-11-27 11:44:35,248 | INFO     | chi2: 4.7607200684133355
[2025-11-27 06:45:07] 2025-11-27 11:44:35,248 | INFO     | sum of square deviations: 13639729275.184065
[2025-11-27 06:45:07] 2025-11-27 11:44:35,251 | INFO     | sum of deviations: 418846351464.8301
[2025-11-27 06:45:07] 2025-11-27 11:44:35,251 | INFO     | mean x: 1764232771.322946
[2025-11-27 06:45:07] 2025-11-27 11:44:35,251 | INFO     | mean y: 3991482.317280453
[2025-11-27 06:45:07] 2025-11-27 11:44:35,251 | INFO     | intersect: -54171750901.93396
[2025-11-27 06:45:07] 2025-11-27 11:44:35,251 | INFO     | chi2: 2.395378000793753
[2025-11-27 06:45:07] 2025-11-27 11:44:35,252 | INFO     | current chi2=2.395378000793753 (change=49.684544220805435 %)
[2025-11-27 06:45:07] 2025-11-27 11:44:35,252 | INFO     | sum of square deviations: 13068327268.307426
[2025-11-27 06:45:07] 2025-11-27 11:44:35,254 | INFO     | sum of deviations: 415896800886.1895
[2025-11-27 06:45:07] 2025-11-27 11:44:35,255 | INFO     | mean x: 1764232618.8247128
[2025-11-27 06:45:07] 2025-11-27 11:44:35,255 | INFO     | mean y: 3990668.396551724
[2025-11-27 06:45:07] 2025-11-27 11:44:35,255 | INFO     | intersect: -56142345976.20862
[2025-11-27 06:45:07] 2025-11-27 11:44:35,255 | INFO     | chi2: 2.352055774687547
[2025-11-27 06:45:07] 2025-11-27 11:44:35,255 | INFO     | current chi2=2.352055774687547 (change=1.8085757693295352 %)
[2025-11-27 06:45:07] 2025-11-27 11:44:35,255 | INFO     | right removable region: 347
[2025-11-27 06:45:07] 2025-11-27 11:44:35,256 | INFO     | sum of square deviations: 13639659735.184065
[2025-11-27 06:45:07] 2025-11-27 11:44:35,258 | INFO     | sum of deviations: 155243231700.493
[2025-11-27 06:45:07] 2025-11-27 11:44:35,258 | INFO     | mean x: 1764233076.322946
[2025-11-27 06:45:07] 2025-11-27 11:44:35,259 | INFO     | mean y: 3988955.6798866857
[2025-11-27 06:45:07] 2025-11-27 11:44:35,259 | INFO     | intersect: -20076075324.426636
[2025-11-27 06:45:07] 2025-11-27 11:44:35,259 | INFO     | chi2: 2.50972843098683
[2025-11-27 06:45:07] 2025-11-27 11:44:35,259 | INFO     | current chi2=2.50972843098683 (change=47.282587614455586 %)
[2025-11-27 06:45:07] 2025-11-27 11:44:35,260 | INFO     | sum of square deviations: 13068230888.307426
[2025-11-27 06:45:07] 2025-11-27 11:44:35,263 | INFO     | sum of deviations: 128195374091.93396
[2025-11-27 06:45:07] 2025-11-27 11:44:35,263 | INFO     | mean x: 1764233228.8247128
[2025-11-27 06:45:07] 2025-11-27 11:44:35,263 | INFO     | mean y: 3996162.58908046
[2025-11-27 06:45:07] 2025-11-27 11:44:35,263 | INFO     | intersect: -17302595730.959663
[2025-11-27 06:45:07] 2025-11-27 11:44:35,263 | INFO     | chi2: 2.4684644886818328
[2025-11-27 06:45:07] 2025-11-27 11:44:35,264 | INFO     | current chi2=2.4684644886818328 (change=1.6441596547070374 %)
[2025-11-27 06:45:07] 2025-11-27 11:44:35,264 | INFO     | left removable region: 20
[2025-11-27 06:45:07] 2025-11-27 11:44:35,264 | INFO     | sum of square deviations: 10842381388.666641
[2025-11-27 06:45:07] 2025-11-27 11:44:35,266 | INFO     | sum of deviations: 232224148551.33328
[2025-11-27 06:45:07] 2025-11-27 11:44:35,266 | INFO     | mean x: 1764233198.3333333
[2025-11-27 06:45:07] 2025-11-27 11:44:35,266 | INFO     | mean y: 4040776.079510703
[2025-11-27 06:45:07] 2025-11-27 11:44:35,267 | INFO     | intersect: -37782635198.73943
[2025-11-27 06:45:07] 2025-11-27 11:44:35,267 | INFO     | chi2: 0.015326434121734853
[2025-11-27 06:45:07] 2025-11-27 11:44:35,267 | INFO     | current memory leak: 21.42 B/s (using 327 data points, chi2=0.02)
[2025-11-27 06:45:07] 2025-11-27 11:44:35,267 | INFO     | could have reported an average CPU frequency of 2501 MHz (16 samples)
[2025-11-27 06:45:07] 2025-11-27 11:44:35,268 | INFO     | ..............................
[2025-11-27 06:45:07] 2025-11-27 11:44:35,268 | INFO     | . Timing measurements:
[2025-11-27 06:45:07] 2025-11-27 11:44:35,268 | INFO     | . get job = 0 s
[2025-11-27 06:45:07] 2025-11-27 11:44:35,268 | INFO     | . initial setup = 2 s
[2025-11-27 06:45:07] 2025-11-27 11:44:35,268 | INFO     | . payload setup = 8 s
[2025-11-27 06:45:07] 2025-11-27 11:44:35,268 | INFO     | . stage-in = 0 s
[2025-11-27 06:45:07] 2025-11-27 11:44:35,268 | INFO     | . payload execution = 21828 s
[2025-11-27 06:45:07] 2025-11-27 11:44:35,268 | INFO     | . stage-out = 2 s
[2025-11-27 06:45:07] 2025-11-27 11:44:35,268 | INFO     | . log creation = 0 s
[2025-11-27 06:45:07] 2025-11-27 11:44:35,268 | INFO     | ..............................
[2025-11-27 06:45:07] 2025-11-27 11:44:35,340 | INFO     | 
[2025-11-27 06:45:07] 2025-11-27 11:44:35,341 | INFO     | job summary report
[2025-11-27 06:45:07] 2025-11-27 11:44:35,341 | INFO     | --------------------------------------------------
[2025-11-27 06:45:07] 2025-11-27 11:44:35,341 | INFO     | PanDA job id: 6897394895
[2025-11-27 06:45:07] 2025-11-27 11:44:35,341 | INFO     | task id: 47556173
[2025-11-27 06:45:07] 2025-11-27 11:44:35,341 | INFO     | errors: (none)
[2025-11-27 06:45:07] 2025-11-27 11:44:35,342 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 06:45:07] 2025-11-27 11:44:35,342 | INFO     | pilot state: finished 
[2025-11-27 06:45:07] 2025-11-27 11:44:35,342 | INFO     | transexitcode: 0
[2025-11-27 06:45:07] 2025-11-27 11:44:35,342 | INFO     | exeerrorcode: 0
[2025-11-27 06:45:07] 2025-11-27 11:44:35,342 | INFO     | exeerrordiag: 
[2025-11-27 06:45:07] 2025-11-27 11:44:35,342 | INFO     | exitcode: 0
[2025-11-27 06:45:07] 2025-11-27 11:44:35,342 | INFO     | exitmsg: OK
[2025-11-27 06:45:07] 2025-11-27 11:44:35,342 | INFO     | cpuconsumptiontime: 253332 s
[2025-11-27 06:45:07] 2025-11-27 11:44:35,342 | INFO     | nevents: 1000
[2025-11-27 06:45:07] 2025-11-27 11:44:35,343 | INFO     | neventsw: 0
[2025-11-27 06:45:07] 2025-11-27 11:44:35,343 | INFO     | pid: 22416
[2025-11-27 06:45:07] 2025-11-27 11:44:35,343 | INFO     | pgrp: 22416
[2025-11-27 06:45:07] 2025-11-27 11:44:35,343 | INFO     | corecount: 12
[2025-11-27 06:45:07] 2025-11-27 11:44:35,343 | INFO     | event service: False
[2025-11-27 06:45:07] 2025-11-27 11:44:35,343 | INFO     | sizes: {0: 2284257, 5: 2284519, 11: 2284575, 21840: 2319944, 21844: 2328938, 21846: 2328994, 21854: 2329368}
[2025-11-27 06:45:07] 2025-11-27 11:44:35,343 | INFO     | --------------------------------------------------
[2025-11-27 06:45:07] 2025-11-27 11:44:35,343 | INFO     | 
[2025-11-27 06:45:07] 2025-11-27 11:44:35,343 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-27 06:45:07] 2025-11-27 11:44:35,367 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 06:45:07] 2025-11-27 11:44:35,368 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 06:45:07] 2025-11-27 11:44:35,368 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 06:45:07] 2025-11-27 11:44:35,368 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 06:45:07] 2025-11-27 11:44:35,369 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 06:45:07] 2025-11-27 11:44:35,369 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 06:45:07] 2025-11-27 11:44:35,369 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 06:45:07] 2025-11-27 11:44:35,369 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 06:45:07] 2025-11-27 11:44:35,369 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 06:45:07] 2025-11-27 11:44:35,369 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 06:45:07] 2025-11-27 11:44:35,370 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 06:45:07] 2025-11-27 11:44:35,370 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 06:45:07] 2025-11-27 11:44:35,370 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 06:45:07] 2025-11-27 11:44:35,370 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 06:45:07] 2025-11-27 11:44:35,370 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 06:45:07] 2025-11-27 11:44:35,370 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 06:45:07] 2025-11-27 11:44:35,371 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 06:45:07] 2025-11-27 11:44:35,371 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 06:45:07] 2025-11-27 11:44:35,371 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 06:45:07] 2025-11-27 11:44:35,371 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 06:45:07] 2025-11-27 11:44:35,371 | INFO     | job 6897394895 has completed (purged errors)
[2025-11-27 06:45:07] 2025-11-27 11:44:35,372 | INFO     | overall cleanup function is called
[2025-11-27 06:45:07] 2025-11-27 11:44:36,388 | INFO     | --- collectZombieJob: --- 10, [22416]
[2025-11-27 06:45:07] 2025-11-27 11:44:36,389 | INFO     | zombie collector waiting for pid 22416
[2025-11-27 06:45:07] 2025-11-27 11:44:36,389 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 06:45:07] 2025-11-27 11:44:36,389 | INFO     | collected zombie processes
[2025-11-27 06:45:07] 2025-11-27 11:44:36,389 | INFO     | will attempt to kill all subprocesses of pid=22416
[2025-11-27 06:45:07] 2025-11-27 11:44:36,476 | INFO     | process IDs to be killed: [22416] (in reverse order)
[2025-11-27 06:45:07] 2025-11-27 11:44:36,534 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 06:45:07] 2025-11-27 11:44:36,535 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 06:45:07] 2025-11-27 11:44:36,539 | INFO     | did not find any defunct processes belonging to 22416
[2025-11-27 06:45:07] 2025-11-27 11:44:36,542 | INFO     | did not find any defunct processes belonging to 22416
[2025-11-27 06:45:07] 2025-11-27 11:44:36,545 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 06:45:07] 2025-11-27 11:44:36,545 | INFO     | ready for new job
[2025-11-27 06:45:07] 2025-11-27 11:44:36,545 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 06:45:07] 2025-11-27 11:44:36,547 | INFO     | ***************************************
[2025-11-27 06:45:07] 2025-11-27 11:44:36,547 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 06:45:07] 2025-11-27 11:44:36,547 | INFO     | ***************************************
[2025-11-27 06:45:07] 2025-11-27 11:44:36,547 | INFO     | 
[2025-11-27 06:45:07] 2025-11-27 11:44:36,548 | INFO     | architecture information:
[2025-11-27 06:45:07] 2025-11-27 11:44:36,548 | INFO     | executing command: cat /etc/os-release
[2025-11-27 06:45:07] 2025-11-27 11:44:36,564 | INFO     | cat /etc/os-release:
[2025-11-27 06:45:07] NAME="CentOS Linux"
[2025-11-27 06:45:07] VERSION="7 (Core)"
[2025-11-27 06:45:07] ID="centos"
[2025-11-27 06:45:07] ID_LIKE="rhel fedora"
[2025-11-27 06:45:07] VERSION_ID="7"
[2025-11-27 06:45:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 06:45:07] ANSI_COLOR="0;31"
[2025-11-27 06:45:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 06:45:07] HOME_URL="https://www.centos.org/"
[2025-11-27 06:45:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 06:45:07] 
[2025-11-27 06:45:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 06:45:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 06:45:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 06:45:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 06:45:07] 
[2025-11-27 06:45:07] 2025-11-27 11:44:36,564 | INFO     | ***************************************
[2025-11-27 06:45:07] 2025-11-27 11:44:37,067 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-27 06:45:07] 2025-11-27 11:44:37,086 | INFO     | sufficient remaining disk space (17615028224 B)
[2025-11-27 06:45:07] 2025-11-27 11:44:37,086 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 06:45:07] 2025-11-27 11:44:37,086 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 06:45:07] 2025-11-27 11:44:37,087 | INFO     | update_server=False
[2025-11-27 06:45:07] 2025-11-27 11:44:37,087 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 06:45:07] 2025-11-27 11:44:37,087 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 06:45:07] 2025-11-27 11:44:37,087 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 06:45:07] 2025-11-27 11:44:37,175 | INFO     | all payload control threads have been joined
[2025-11-27 06:45:07] 2025-11-27 11:44:37,244 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 06:45:07] 2025-11-27 11:44:37,244 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 06:45:07] 2025-11-27 11:44:37,244 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 06:45:07] 2025-11-27 11:44:37,244 | INFO     | will abort loop
[2025-11-27 06:45:07] 2025-11-27 11:44:37,669 | INFO     | all data control threads have been joined
[2025-11-27 06:45:07] 2025-11-27 11:44:38,092 | INFO     | [job] retrieve thread has finished
[2025-11-27 06:45:07] 2025-11-27 11:44:38,093 | INFO     | [job] queue monitor thread has finished
[2025-11-27 06:45:07] 2025-11-27 11:44:38,180 | INFO     | [payload] control thread has finished
[2025-11-27 06:45:07] 2025-11-27 11:44:38,250 | INFO     | [job] job monitor thread has finished
[2025-11-27 06:45:07] 2025-11-27 11:44:38,479 | INFO     | [payload] validate_post thread has finished
[2025-11-27 06:45:07] 2025-11-27 11:44:38,563 | INFO     | [data] copytool_in thread has finished
[2025-11-27 06:45:07] 2025-11-27 11:44:38,584 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 06:45:07] 2025-11-27 11:44:38,655 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 06:45:07] 2025-11-27 11:44:38,675 | INFO     | [data] control thread has finished
[2025-11-27 06:45:07] 2025-11-27 11:44:38,784 | INFO     | all job control threads have been joined
[2025-11-27 06:45:07] 2025-11-27 11:44:38,898 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 06:45:07] 2025-11-27 11:44:39,093 | INFO     | [data] copytool_out thread has finished
[2025-11-27 06:45:07] 2025-11-27 11:44:39,122 | INFO     | [payload] failed_post thread has finished
[2025-11-27 06:45:07] 2025-11-27 11:44:39,274 | INFO     | [job] validate thread has finished
[2025-11-27 06:45:07] 2025-11-27 11:44:39,290 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 06:45:07] 2025-11-27 11:44:39,789 | INFO     | [job] control thread has finished
[2025-11-27 06:45:07] 2025-11-27 11:44:41,078 | INFO     | [monitor] cgroup control has ended
[2025-11-27 06:45:07] 2025-11-27 11:44:42,661 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 06:45:07] 2025-11-27 11:44:48,115 | INFO     | job.realtimelogging is not enabled
[2025-11-27 06:45:07] 2025-11-27 11:44:49,120 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 06:45:07] 2025-11-27 11:44:50,629 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140648611809088)>', '<ExcThread(monitor, started 140647361148672)>']
[2025-11-27 06:45:07] 2025-11-27 11:44:55,655 | INFO     | all workflow threads have been joined
[2025-11-27 06:45:07] 2025-11-27 11:44:55,655 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 06:45:07] 2025-11-27 11:44:55,655 | INFO     | traces error code: 0
[2025-11-27 06:45:07] 2025-11-27 11:44:55,656 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 06:45:07] 2025-11-27 11:45:07,645 | INFO     | PID=16035 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 06:45:07] 2025-11-27 11:45:07,646 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 06:45:07] 2025-11-27 11:45:07,646 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 06:45:07] 2025-11-27 11:45:07,646 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 06:45:07] 2025-11-27 11:45:07,646 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 06:45:07] 2025-11-27 11:45:07,647 | INFO     | [monitor] control thread has ended
[2025-11-27 06:45:07] 2025-11-27 11:45:07,735 [wrapper] ==== pilot stdout END ====
[2025-11-27 06:45:07] 2025-11-27 11:45:07,739 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 06:45:07] 2025-11-27 11:45:07,744 [wrapper] pilotpid: 16035
[2025-11-27 06:45:07] 2025-11-27 11:45:07,747 [wrapper] Pilot exit status: 0
[2025-11-27 06:45:07] 2025-11-27 11:45:07,761 [wrapper] pandaids: 6897394895
[2025-11-27 06:45:07] 2025-11-27 11:45:07,796 [wrapper] cleanup supervisor_pilot 20503 16036
[2025-11-27 06:45:07] 2025-11-27 11:45:07,800 [wrapper] Test setup, not cleaning
[2025-11-27 06:45:07] 2025-11-27 11:45:07,804 [wrapper] apfmon messages muted
[2025-11-27 06:45:07] 2025-11-27 11:45:07,807 [wrapper] ==== wrapper stdout END ====
[2025-11-27 06:45:07] 2025-11-27 11:45:07,811 [wrapper] ==== wrapper stderr END ====
[2025-11-27 06:45:07]  *** Error codes and diagnostics ***
[2025-11-27 06:45:07]     "exeErrorCode": 0,
[2025-11-27 06:45:07]     "exeErrorDiag": "",
[2025-11-27 06:45:07]     "pilotErrorCode": 0,
[2025-11-27 06:45:07]     "pilotErrorDiag": "",
[2025-11-27 06:45:07]  *** Listing of results directory ***
[2025-11-27 06:45:07] total 1286340
[2025-11-27 06:45:07] -rw-r--r-- 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-27 06:45:07] -rw-r--r-- 1 boincer umatlas      5112 Nov 25 11:55 queuedata.json
[2025-11-27 06:45:07] -rwx------ 1 boincer umatlas     36292 Nov 25 11:56 runpilot2-wrapper.sh
[2025-11-27 06:45:07] -rw-r--r-- 1 boincer umatlas       100 Nov 27 00:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 06:45:07] -rwxr-xr-x 1 boincer umatlas      7986 Nov 27 00:39 run_atlas
[2025-11-27 06:45:07] -rw-r--r-- 1 boincer umatlas       105 Nov 27 00:39 job.xml
[2025-11-27 06:45:07] -rw-r--r-- 2 boincer umatlas 410076974 Nov 27 00:39 EVNT.47483658._003106.pool.root.1
[2025-11-27 06:45:07] -rw-r--r-- 2 boincer umatlas     15847 Nov 27 00:39 start_atlas.sh
[2025-11-27 06:45:07] drwxrwx--x 2 boincer umatlas      4096 Nov 27 00:39 shared
[2025-11-27 06:45:07] -rw-r--r-- 2 boincer umatlas    590103 Nov 27 00:39 input.tar.gz
[2025-11-27 06:45:07] -rw-r--r-- 1 boincer umatlas         0 Nov 27 00:39 boinc_lockfile
[2025-11-27 06:45:07] -rw-r--r-- 1 boincer umatlas      2782 Nov 27 00:39 pandaJob.out
[2025-11-27 06:45:07] -rw------- 1 boincer umatlas        57 Nov 27 00:39 setup.sh.local
[2025-11-27 06:45:07] -rw------- 1 boincer umatlas    991578 Nov 27 00:40 agis_schedconf.cvmfs.json
[2025-11-27 06:45:07] drwx------ 5 boincer umatlas      4096 Nov 27 00:40 pilot3
[2025-11-27 06:45:07] -rw-r--r-- 1 boincer umatlas       532 Nov 27 06:37 boinc_task_state.xml
[2025-11-27 06:45:07] -rw-r--r-- 1 boincer umatlas      5957 Nov 27 06:38 init_data.xml
[2025-11-27 06:45:07] -rw------- 1 boincer umatlas 892853770 Nov 27 06:43 HITS.47556173._000831.pool.root.1
[2025-11-27 06:45:07] -rw------- 1 boincer umatlas      1060 Nov 27 06:44 memory_monitor_summary.json
[2025-11-27 06:45:07] -rw------- 1 boincer umatlas   1516240 Nov 27 06:44 agis_ddmendpoints.agis.ALL.json
[2025-11-27 06:45:07] -rw------- 1 boincer umatlas   2123697 Nov 27 06:44 log.47556173._000831.job.log.tgz.1
[2025-11-27 06:45:07] -rw------- 1 boincer umatlas      8661 Nov 27 06:44 heartbeat.json
[2025-11-27 06:45:07] -rw-r--r-- 1 boincer umatlas      8192 Nov 27 06:45 boinc_mmap_file
[2025-11-27 06:45:07] -rw------- 1 boincer umatlas       745 Nov 27 06:45 pilotlog.txt
[2025-11-27 06:45:07] -rw------- 1 boincer umatlas        95 Nov 27 06:45 pilot_heartbeat.json
[2025-11-27 06:45:07] -rw------- 1 boincer umatlas   3059401 Nov 27 06:45 log.47556173._000831.job.log.1
[2025-11-27 06:45:07] -rw------- 1 boincer umatlas       353 Nov 27 06:45 output.list
[2025-11-27 06:45:07] -rw-r--r-- 1 boincer umatlas       620 Nov 27 06:45 runtime_log
[2025-11-27 06:45:07] -rw------- 1 boincer umatlas   5201920 Nov 27 06:45 result.tar.gz
[2025-11-27 06:45:07] -rw-r--r-- 1 boincer umatlas      9345 Nov 27 06:45 runtime_log.err
[2025-11-27 06:45:07] -rw------- 1 boincer umatlas       669 Nov 27 06:45 k0oKDm8VBi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmuSMKDmPnH56m.diag
[2025-11-27 06:45:07] -rw-r--r-- 1 boincer umatlas        29 Nov 27 06:45 wrapper_checkpoint.txt
[2025-11-27 06:45:07] -rw-r--r-- 1 boincer umatlas     21283 Nov 27 06:45 stderr.txt
[2025-11-27 06:45:07] HITS file was successfully produced:
[2025-11-27 06:45:07] -rw------- 1 boincer umatlas 892853770 Nov 27 06:43 shared/HITS.pool.root.1
[2025-11-27 06:45:07]  *** Contents of shared directory: ***
[2025-11-27 06:45:07] total 1278080
[2025-11-27 06:45:07] -rw-r--r-- 2 boincer umatlas 410076974 Nov 27 00:39 ATLAS.root_0
[2025-11-27 06:45:07] -rw-r--r-- 2 boincer umatlas     15847 Nov 27 00:39 start_atlas.sh
[2025-11-27 06:45:07] -rw-r--r-- 2 boincer umatlas    590103 Nov 27 00:39 input.tar.gz
[2025-11-27 06:45:07] -rw------- 1 boincer umatlas 892853770 Nov 27 06:43 HITS.pool.root.1
[2025-11-27 06:45:07] -rw------- 1 boincer umatlas   5201920 Nov 27 06:45 result.tar.gz
06:45:09 (12156): run_atlas exited; CPU time 250509.421903
06:45:09 (12156): called boinc_finish(0)

</stderr_txt>
]]>

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