Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
02:21:16 (656959): wrapper (7.7.26015): starting
02:21:16 (656959): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 02:21:16] Arguments: --nthreads 8
[2025-11-27 02:21:16] Threads: 8
[2025-11-27 02:21:16] Checking for CVMFS
[2025-11-27 02:21:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 02:21:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 02:21:17] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 02:21:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 02:21:18] 2.13.3.0 12130 29486 364436 153352 1 633 39509816 40960000 21400 16776704 0 98350929 99.655 88646199 35736 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 02:21:18] CVMFS is ok
[2025-11-27 02:21:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 02:21:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 02:21:19] Further information can be found at the LHC@home message board.
[2025-11-27 02:21:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 02:21:19] Checking for apptainer binary...
[2025-11-27 02:21:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 02:21:19] Running /usr/bin/apptainer --version
[2025-11-27 02:21:19] apptainer version 1.4.4-1.el9
[2025-11-27 02:21:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 02:21:19] c6-5-7-4.aglt2.org
[2025-11-27 02:21:19] apptainer works
[2025-11-27 02:21:19] Set ATHENA_PROC_NUMBER=8
[2025-11-27 02:21:19] Set ATHENA_CORE_NUMBER=8
[2025-11-27 02:21:19] Starting ATLAS job with PandaID=6897487250
[2025-11-27 02:21:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 02:11:21]  *** The last 200 lines of the pilot log: ***
[2025-11-28 02:11:21] 2025-11-28 07:10:27,968 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 02:11:21] 2025-11-28 07:10:28,343 | INFO     | time since job start (85684s) is within the limit (172800.0s)
[2025-11-28 02:11:21] 2025-11-28 07:10:30,350 | INFO     | time since job start (85686s) is within the limit (172800.0s)
[2025-11-28 02:11:21] 2025-11-28 07:10:30,474 | INFO     | monitor loop #4961: job 0:6897487250 is in state 'finished'
[2025-11-28 02:11:21] 2025-11-28 07:10:30,478 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 02:11:21] 2025-11-28 07:10:32,366 | INFO     | time since job start (85688s) is within the limit (172800.0s)
[2025-11-28 02:11:21] 2025-11-28 07:10:33,026 | INFO     | monitor loop #4962: job 0:6897487250 is in state 'finished'
[2025-11-28 02:11:21] 2025-11-28 07:10:33,026 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 02:11:21] 2025-11-28 07:10:34,388 | INFO     | time since job start (85690s) is within the limit (172800.0s)
[2025-11-28 02:11:21] 2025-11-28 07:10:35,539 | INFO     | monitor loop #4963: job 0:6897487250 is in state 'finished'
[2025-11-28 02:11:21] 2025-11-28 07:10:35,543 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 02:11:21] 2025-11-28 07:10:36,500 | INFO     | time since job start (85692s) is within the limit (172800.0s)
[2025-11-28 02:11:21] 2025-11-28 07:10:37,195 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-28 02:11:21] 2025-11-28 07:10:37,211 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2736.8659642857133
[2025-11-28 02:11:21] 2025-11-28 07:10:37,224 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6897487250/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 02:11:21] 2025-11-28 07:10:37,225 | INFO     | extracted standard info from prmon json
[2025-11-28 02:11:21] 2025-11-28 07:10:37,225 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 02:11:21] 2025-11-28 07:10:37,225 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 02:11:21] 2025-11-28 07:10:37,299 | INFO     | fitting pss+swap vs Time
[2025-11-28 02:11:21] 2025-11-28 07:10:37,310 | INFO     | sum of square deviations: 852649912678.031
[2025-11-28 02:11:21] 2025-11-28 07:10:37,437 | INFO     | sum of deviations: 2203979990699.3853
[2025-11-28 02:11:21] 2025-11-28 07:10:37,437 | INFO     | mean x: 1764271020.487509
[2025-11-28 02:11:21] 2025-11-28 07:10:37,437 | INFO     | mean y: 2874461.708065667
[2025-11-28 02:11:21] 2025-11-28 07:10:37,437 | INFO     | intersect: -4557517757.312263
[2025-11-28 02:11:21] 2025-11-28 07:10:37,439 | INFO     | chi2: 30.455758843866533
[2025-11-28 02:11:21] 2025-11-28 07:10:37,441 | INFO     | sum of square deviations: 843553871788.9642
[2025-11-28 02:11:21] 2025-11-28 07:10:37,493 | INFO     | sum of deviations: 2742999169346.7827
[2025-11-28 02:11:21] 2025-11-28 07:10:37,493 | INFO     | mean x: 1764270867.9949856
[2025-11-28 02:11:21] 2025-11-28 07:10:37,493 | INFO     | mean y: 2883496.9706303724
[2025-11-28 02:11:21] 2025-11-28 07:10:37,493 | INFO     | intersect: -5734027549.563771
[2025-11-28 02:11:21] 2025-11-28 07:10:37,495 | INFO     | chi2: 26.09239335904276
[2025-11-28 02:11:21] 2025-11-28 07:10:37,495 | INFO     | current chi2=26.09239335904276 (change=14.326897934780927 %)
[2025-11-28 02:11:21] 2025-11-28 07:10:37,496 | INFO     | right removable region: 1395
[2025-11-28 02:11:21] 2025-11-28 07:10:37,534 | INFO     | sum of square deviations: 843551916366.9817
[2025-11-28 02:11:21] 2025-11-28 07:10:37,730 | INFO     | sum of deviations: 1645212188979.5894
[2025-11-28 02:11:21] 2025-11-28 07:10:37,730 | INFO     | mean x: 1764271172.9964182
[2025-11-28 02:11:21] 2025-11-28 07:10:37,730 | INFO     | mean y: 2883827.318051576
[2025-11-28 02:11:21] 2025-11-28 07:10:37,730 | INFO     | intersect: -3438043022.780251
[2025-11-28 02:11:21] 2025-11-28 07:10:37,732 | INFO     | chi2: 26.442225831735332
[2025-11-28 02:11:21] 2025-11-28 07:10:37,732 | INFO     | current chi2=26.442225831735332 (change=13.178240058659659 %)
[2025-11-28 02:11:21] 2025-11-28 07:10:37,732 | INFO     | left removable region: 10
[2025-11-28 02:11:21] 2025-11-28 07:10:37,742 | INFO     | sum of square deviations: 823767021977.9764
[2025-11-28 02:11:21] 2025-11-28 07:10:38,079 | INFO     | monitor loop #4964: job 0:6897487250 is in state 'finished'
[2025-11-28 02:11:21] 2025-11-28 07:10:38,079 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 02:11:21] 2025-11-28 07:10:38,146 | INFO     | sum of deviations: 1847627318658.524
[2025-11-28 02:11:21] 2025-11-28 07:10:38,192 | INFO     | mean x: 1764271142.5140793
[2025-11-28 02:11:21] 2025-11-28 07:10:38,192 | INFO     | mean y: 2901559.1523465705
[2025-11-28 02:11:21] 2025-11-28 07:10:38,192 | INFO     | intersect: -3954182754.083305
[2025-11-28 02:11:21] 2025-11-28 07:10:38,194 | INFO     | chi2: 19.2451989734645
[2025-11-28 02:11:21] 2025-11-28 07:10:38,194 | INFO     | current memory leak: 2.24 B/s (using 1385 data points, chi2=19.25)
[2025-11-28 02:11:21] 2025-11-28 07:10:38,195 | INFO     | could have reported an average CPU frequency of 2807 MHz (50 samples)
[2025-11-28 02:11:21] 2025-11-28 07:10:38,195 | INFO     | ..............................
[2025-11-28 02:11:21] 2025-11-28 07:10:38,222 | INFO     | . Timing measurements:
[2025-11-28 02:11:21] 2025-11-28 07:10:38,222 | INFO     | . get job = 0 s
[2025-11-28 02:11:21] 2025-11-28 07:10:38,222 | INFO     | . initial setup = 5 s
[2025-11-28 02:11:21] 2025-11-28 07:10:38,222 | INFO     | . payload setup = 61 s
[2025-11-28 02:11:21] 2025-11-28 07:10:38,222 | INFO     | . stage-in = 0 s
[2025-11-28 02:11:21] 2025-11-28 07:10:38,222 | INFO     | . payload execution = 85485 s
[2025-11-28 02:11:21] 2025-11-28 07:10:38,222 | INFO     | . stage-out = 18 s
[2025-11-28 02:11:21] 2025-11-28 07:10:38,222 | INFO     | . log creation = 6 s
[2025-11-28 02:11:21] 2025-11-28 07:10:38,222 | INFO     | ..............................
[2025-11-28 02:11:21] 2025-11-28 07:10:38,539 | INFO     | time since job start (85694s) is within the limit (172800.0s)
[2025-11-28 02:11:21] 2025-11-28 07:10:39,103 | INFO     | 
[2025-11-28 02:11:21] 2025-11-28 07:10:39,103 | INFO     | job summary report
[2025-11-28 02:11:21] 2025-11-28 07:10:39,103 | INFO     | --------------------------------------------------
[2025-11-28 02:11:21] 2025-11-28 07:10:39,103 | INFO     | PanDA job id: 6897487250
[2025-11-28 02:11:21] 2025-11-28 07:10:39,103 | INFO     | task id: 47556161
[2025-11-28 02:11:21] 2025-11-28 07:10:39,103 | INFO     | errors: (none)
[2025-11-28 02:11:21] 2025-11-28 07:10:39,103 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 02:11:21] 2025-11-28 07:10:39,103 | INFO     | pilot state: finished 
[2025-11-28 02:11:21] 2025-11-28 07:10:39,103 | INFO     | transexitcode: 0
[2025-11-28 02:11:21] 2025-11-28 07:10:39,103 | INFO     | exeerrorcode: 0
[2025-11-28 02:11:21] 2025-11-28 07:10:39,103 | INFO     | exeerrordiag: 
[2025-11-28 02:11:21] 2025-11-28 07:10:39,104 | INFO     | exitcode: 0
[2025-11-28 02:11:21] 2025-11-28 07:10:39,104 | INFO     | exitmsg: OK
[2025-11-28 02:11:21] 2025-11-28 07:10:39,104 | INFO     | cpuconsumptiontime: 246005 s
[2025-11-28 02:11:21] 2025-11-28 07:10:39,104 | INFO     | nevents: 1000
[2025-11-28 02:11:21] 2025-11-28 07:10:39,104 | INFO     | neventsw: 0
[2025-11-28 02:11:21] 2025-11-28 07:10:39,104 | INFO     | pid: 671263
[2025-11-28 02:11:21] 2025-11-28 07:10:39,104 | INFO     | pgrp: 671263
[2025-11-28 02:11:21] 2025-11-28 07:10:39,104 | INFO     | corecount: 8
[2025-11-28 02:11:21] 2025-11-28 07:10:39,104 | INFO     | event service: False
[2025-11-28 02:11:21] 2025-11-28 07:10:39,104 | INFO     | sizes: {0: 2284094, 1: 2284293, 2: 2284293, 13: 2284321, 24: 2284377, 30: 2284667, 35: 2284823, 85552: 2349016, 85555: 2349015, 85574: 2358065, 85577: 2358121, 856
[2025-11-28 02:11:21] 2025-11-28 07:10:39,104 | INFO     | --------------------------------------------------
[2025-11-28 02:11:21] 2025-11-28 07:10:39,104 | INFO     | 
[2025-11-28 02:11:21] 2025-11-28 07:10:39,104 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-28 02:11:21] 2025-11-28 07:10:39,141 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 02:11:21] 2025-11-28 07:10:39,142 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 02:11:21] 2025-11-28 07:10:39,142 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 02:11:21] 2025-11-28 07:10:39,142 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 02:11:21] 2025-11-28 07:10:39,142 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 02:11:21] 2025-11-28 07:10:39,142 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 02:11:21] 2025-11-28 07:10:39,142 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 02:11:21] 2025-11-28 07:10:39,142 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 02:11:21] 2025-11-28 07:10:39,142 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 02:11:21] 2025-11-28 07:10:39,142 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 02:11:21] 2025-11-28 07:10:39,142 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 02:11:21] 2025-11-28 07:10:39,143 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 02:11:21] 2025-11-28 07:10:39,143 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 02:11:21] 2025-11-28 07:10:39,143 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 02:11:21] 2025-11-28 07:10:39,143 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 02:11:21] 2025-11-28 07:10:39,143 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 02:11:21] 2025-11-28 07:10:39,143 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 02:11:21] 2025-11-28 07:10:39,143 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 02:11:21] 2025-11-28 07:10:39,143 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 02:11:21] 2025-11-28 07:10:39,143 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 02:11:21] 2025-11-28 07:10:39,143 | INFO     | job 6897487250 has completed (purged errors)
[2025-11-28 02:11:21] 2025-11-28 07:10:39,143 | INFO     | overall cleanup function is called
[2025-11-28 02:11:21] 2025-11-28 07:10:40,318 | INFO     | --- collectZombieJob: --- 10, [671263]
[2025-11-28 02:11:21] 2025-11-28 07:10:40,318 | INFO     | zombie collector waiting for pid 671263
[2025-11-28 02:11:21] 2025-11-28 07:10:40,318 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 02:11:21] 2025-11-28 07:10:40,318 | INFO     | collected zombie processes
[2025-11-28 02:11:21] 2025-11-28 07:10:40,318 | INFO     | will attempt to kill all subprocesses of pid=671263
[2025-11-28 02:11:21] 2025-11-28 07:10:40,843 | INFO     | PID=661335 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-28 02:11:21] 2025-11-28 07:10:40,843 | INFO     | .. there are 27 such processes running
[2025-11-28 02:11:21] 2025-11-28 07:10:41,911 | INFO     | process IDs to be killed: [671263] (in reverse order)
[2025-11-28 02:11:21] 2025-11-28 07:10:42,735 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 02:11:21] 2025-11-28 07:10:42,736 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 02:11:21] 2025-11-28 07:10:42,783 | INFO     | did not find any defunct processes belonging to 671263
[2025-11-28 02:11:21] 2025-11-28 07:10:42,822 | INFO     | did not find any defunct processes belonging to 671263
[2025-11-28 02:11:21] 2025-11-28 07:10:42,834 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 02:11:21] 2025-11-28 07:10:42,834 | INFO     | ready for new job
[2025-11-28 02:11:21] 2025-11-28 07:10:42,834 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 02:11:21] 2025-11-28 07:10:42,875 | INFO     | ***************************************
[2025-11-28 02:11:21] 2025-11-28 07:10:42,875 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 02:11:21] 2025-11-28 07:10:42,875 | INFO     | ***************************************
[2025-11-28 02:11:21] 2025-11-28 07:10:42,875 | INFO     | 
[2025-11-28 02:11:21] 2025-11-28 07:10:42,929 | INFO     | architecture information:
[2025-11-28 02:11:21] 2025-11-28 07:10:42,957 | INFO     | executing command: cat /etc/os-release
[2025-11-28 02:11:21] 2025-11-28 07:10:43,467 | INFO     | cat /etc/os-release:
[2025-11-28 02:11:21] NAME="CentOS Linux"
[2025-11-28 02:11:21] VERSION="7 (Core)"
[2025-11-28 02:11:21] ID="centos"
[2025-11-28 02:11:21] ID_LIKE="rhel fedora"
[2025-11-28 02:11:21] VERSION_ID="7"
[2025-11-28 02:11:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 02:11:21] ANSI_COLOR="0;31"
[2025-11-28 02:11:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 02:11:21] HOME_URL="https://www.centos.org/"
[2025-11-28 02:11:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 02:11:21] 
[2025-11-28 02:11:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 02:11:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 02:11:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 02:11:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 02:11:21] 
[2025-11-28 02:11:21] 2025-11-28 07:10:43,468 | INFO     | ***************************************
[2025-11-28 02:11:21] 2025-11-28 07:10:43,972 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-28 02:11:21] 2025-11-28 07:10:44,186 | INFO     | sufficient remaining disk space (69146247168 B)
[2025-11-28 02:11:21] 2025-11-28 07:10:44,186 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 02:11:21] 2025-11-28 07:10:44,187 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 02:11:21] 2025-11-28 07:10:44,187 | INFO     | update_server=False
[2025-11-28 02:11:21] 2025-11-28 07:10:44,187 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 02:11:21] 2025-11-28 07:10:44,187 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 02:11:21] 2025-11-28 07:10:44,187 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 02:11:21] 2025-11-28 07:10:44,187 | INFO     | aborting loop
[2025-11-28 02:11:21] 2025-11-28 07:10:44,187 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 02:11:21] 2025-11-28 07:10:44,254 | INFO     | all payload control threads have been joined
[2025-11-28 02:11:21] 2025-11-28 07:10:44,847 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 02:11:21] 2025-11-28 07:10:45,174 | INFO     | all job control threads have been joined
[2025-11-28 02:11:21] 2025-11-28 07:10:45,194 | INFO     | [job] retrieve thread has finished
[2025-11-28 02:11:21] 2025-11-28 07:10:45,194 | INFO     | [job] queue monitor thread has finished
[2025-11-28 02:11:21] 2025-11-28 07:10:45,195 | INFO     | [job] job monitor thread has finished
[2025-11-28 02:11:21] 2025-11-28 07:10:45,259 | INFO     | [payload] control thread has finished
[2025-11-28 02:11:21] 2025-11-28 07:10:45,263 | INFO     | all data control threads have been joined
[2025-11-28 02:11:21] 2025-11-28 07:10:45,670 | INFO     | [job] validate thread has finished
[2025-11-28 02:11:21] 2025-11-28 07:10:45,924 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 02:11:21] 2025-11-28 07:10:45,939 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 02:11:21] 2025-11-28 07:10:45,944 | INFO     | [data] copytool_in thread has finished
[2025-11-28 02:11:21] 2025-11-28 07:10:46,180 | INFO     | [job] control thread has finished
[2025-11-28 02:11:21] 2025-11-28 07:10:46,216 | INFO     | [data] copytool_out thread has finished
[2025-11-28 02:11:21] 2025-11-28 07:10:46,272 | INFO     | [data] control thread has finished
[2025-11-28 02:11:21] 2025-11-28 07:10:46,567 | INFO     | [payload] validate_post thread has finished
[2025-11-28 02:11:21] 2025-11-28 07:10:46,642 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 02:11:21] 2025-11-28 07:10:46,653 | INFO     | [payload] failed_post thread has finished
[2025-11-28 02:11:21] 2025-11-28 07:10:46,690 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 02:11:21] 2025-11-28 07:10:48,859 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 02:11:21] 2025-11-28 07:11:02,379 | INFO     | [monitor] cgroup control has ended
[2025-11-28 02:11:21] 2025-11-28 07:11:03,280 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140118504068928)>', '<ExcThread(monitor, started 140117872211712)>']
[2025-11-28 02:11:21] 2025-11-28 07:11:08,310 | INFO     | all workflow threads have been joined
[2025-11-28 02:11:21] 2025-11-28 07:11:08,310 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 02:11:21] 2025-11-28 07:11:08,310 | INFO     | traces error code: 0
[2025-11-28 02:11:21] 2025-11-28 07:11:08,311 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 02:11:21] 2025-11-28 07:11:20,047 | INFO     | PID=661335 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-28 02:11:21] 2025-11-28 07:11:20,048 | INFO     | .. there are 27 such processes running
[2025-11-28 02:11:21] 2025-11-28 07:11:20,048 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 02:11:21] 2025-11-28 07:11:20,048 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 02:11:21] 2025-11-28 07:11:20,048 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 02:11:21] 2025-11-28 07:11:20,048 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 02:11:21] 2025-11-28 07:11:20,048 | INFO     | [monitor] control thread has ended
[2025-11-28 02:11:21] 2025-11-28 07:11:20,229 [wrapper] ==== pilot stdout END ====
[2025-11-28 02:11:21] 2025-11-28 07:11:20,264 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 02:11:21] 2025-11-28 07:11:20,294 [wrapper] pilotpid: 661335
[2025-11-28 02:11:21] 2025-11-28 07:11:20,306 [wrapper] Pilot exit status: 0
[2025-11-28 02:11:21] 2025-11-28 07:11:20,459 [wrapper] pandaids: 6897487250
[2025-11-28 02:11:21] 2025-11-28 07:11:20,571 [wrapper] cleanup supervisor_pilot  179007 661336
[2025-11-28 02:11:21] 2025-11-28 07:11:20,616 [wrapper] Test setup, not cleaning
[2025-11-28 02:11:21] 2025-11-28 07:11:20,634 [wrapper] apfmon messages muted
[2025-11-28 02:11:21] 2025-11-28 07:11:20,661 [wrapper] ==== wrapper stdout END ====
[2025-11-28 02:11:21] 2025-11-28 07:11:20,718 [wrapper] ==== wrapper stderr END ====
[2025-11-28 02:11:21]  *** Error codes and diagnostics ***
[2025-11-28 02:11:21]     "exeErrorCode": 0,
[2025-11-28 02:11:21]     "exeErrorDiag": "",
[2025-11-28 02:11:21]     "pilotErrorCode": 0,
[2025-11-28 02:11:21]     "pilotErrorDiag": "",
[2025-11-28 02:11:21]  *** Listing of results directory ***
[2025-11-28 02:11:21] total 1322680
[2025-11-28 02:11:21] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-28 02:11:21] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 11:55 queuedata.json
[2025-11-28 02:11:21] -rwx------. 1 boincer umatlas     36292 Nov 25 11:57 runpilot2-wrapper.sh
[2025-11-28 02:11:21] -rw-r--r--. 1 boincer umatlas       100 Nov 27 02:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 02:11:21] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 02:21 run_atlas
[2025-11-28 02:11:21] -rw-r--r--. 1 boincer umatlas       105 Nov 27 02:21 job.xml
[2025-11-28 02:11:21] -rw-r--r--. 2 boincer umatlas 411586819 Nov 27 02:21 EVNT.47483658._002247.pool.root.1
[2025-11-28 02:11:21] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 02:21 start_atlas.sh
[2025-11-28 02:11:21] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 02:21 shared
[2025-11-28 02:11:21] -rw-r--r--. 2 boincer umatlas    590103 Nov 27 02:21 input.tar.gz
[2025-11-28 02:11:21] -rw-r--r--. 1 boincer umatlas         0 Nov 27 02:21 boinc_lockfile
[2025-11-28 02:11:21] -rw-r--r--. 1 boincer umatlas      2786 Nov 27 02:21 pandaJob.out
[2025-11-28 02:11:21] -rw-------. 1 boincer umatlas        57 Nov 27 02:21 setup.sh.local
[2025-11-28 02:11:21] -rw-------. 1 boincer umatlas    991570 Nov 27 02:22 agis_schedconf.cvmfs.json
[2025-11-28 02:11:21] drwx------. 5 boincer umatlas      4096 Nov 27 02:22 pilot3
[2025-11-28 02:11:21] -rw-r--r--. 1 boincer umatlas       533 Nov 28 00:43 boinc_task_state.xml
[2025-11-28 02:11:21] -rw-r--r--. 1 boincer umatlas      6841 Nov 28 02:02 init_data.xml
[2025-11-28 02:11:21] -rw-------. 1 boincer umatlas 913002996 Nov 28 02:05 HITS.47556161._002305.pool.root.1
[2025-11-28 02:11:21] -rw-------. 1 boincer umatlas      1058 Nov 28 02:09 memory_monitor_summary.json
[2025-11-28 02:11:21] -rw-------. 1 boincer umatlas   1516240 Nov 28 02:09 agis_ddmendpoints.agis.ALL.json
[2025-11-28 02:11:21] -rw-------. 1 boincer umatlas   2432005 Nov 28 02:09 log.47556161._002305.job.log.tgz.1
[2025-11-28 02:11:21] -rw-------. 1 boincer umatlas        95 Nov 28 02:10 pilot_heartbeat.json
[2025-11-28 02:11:21] -rw-------. 1 boincer umatlas      8624 Nov 28 02:10 heartbeat.json
[2025-11-28 02:11:21] -rw-r--r--. 1 boincer umatlas      8192 Nov 28 02:11 boinc_mmap_file
[2025-11-28 02:11:21] -rw-------. 1 boincer umatlas       822 Nov 28 02:11 pilotlog.txt
[2025-11-28 02:11:21] -rw-r--r--. 1 boincer umatlas        29 Nov 28 02:11 wrapper_checkpoint.txt
[2025-11-28 02:11:21] -rw-------. 1 boincer umatlas  10525313 Nov 28 02:11 log.47556161._002305.job.log.1
[2025-11-28 02:11:21] -rw-------. 1 boincer umatlas       353 Nov 28 02:11 output.list
[2025-11-28 02:11:21] -rw-r--r--. 1 boincer umatlas       620 Nov 28 02:11 runtime_log
[2025-11-28 02:11:21] -rw-------. 1 boincer umatlas  12974080 Nov 28 02:11 result.tar.gz
[2025-11-28 02:11:21] -rw-r--r--. 1 boincer umatlas      9343 Nov 28 02:11 runtime_log.err
[2025-11-28 02:11:21] -rw-------. 1 boincer umatlas       660 Nov 28 02:11 HOYLDmGXBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmPbJKDmqBlbVo.diag
[2025-11-28 02:11:21] -rw-r--r--. 1 boincer umatlas     21639 Nov 28 02:11 stderr.txt
[2025-11-28 02:11:21] HITS file was successfully produced:
[2025-11-28 02:11:21] -rw-------. 1 boincer umatlas 913002996 Nov 28 02:05 shared/HITS.pool.root.1
[2025-11-28 02:11:21]  *** Contents of shared directory: ***
[2025-11-28 02:11:21] total 1306828
[2025-11-28 02:11:21] -rw-r--r--. 2 boincer umatlas 411586819 Nov 27 02:21 ATLAS.root_0
[2025-11-28 02:11:21] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 02:21 start_atlas.sh
[2025-11-28 02:11:21] -rw-r--r--. 2 boincer umatlas    590103 Nov 27 02:21 input.tar.gz
[2025-11-28 02:11:21] -rw-------. 1 boincer umatlas 913002996 Nov 28 02:05 HITS.pool.root.1
[2025-11-28 02:11:21] -rw-------. 1 boincer umatlas  12974080 Nov 28 02:11 result.tar.gz
02:11:44 (656959): run_atlas exited; CPU time 247792.829527
02:11:44 (656959): called boinc_finish(0)

</stderr_txt>
]]>

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