Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:18:36 (3883713): wrapper (7.7.26015): starting
00:18:36 (3883713): wrapper: running run_atlas (--nthreads 9)
[2025-11-27 00:18:36] Arguments: --nthreads 9
[2025-11-27 00:18:36] Threads: 9
[2025-11-27 00:18:36] Checking for CVMFS
[2025-11-27 00:18:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:18:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:18:37] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:18:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:18:37] 2.13.3.0 11460 31061 230928 153349 3 143 16548646 32935937 67905 16776704 0 403425267 99.728 270539775 35421 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 00:18:37] CVMFS is ok
[2025-11-27 00:18:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:18:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:18:37] Further information can be found at the LHC@home message board.
[2025-11-27 00:18:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:18:37] Checking for apptainer binary...
[2025-11-27 00:18:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:18:37] Running /usr/bin/apptainer --version
[2025-11-27 00:18:37] apptainer version 1.4.4-1.el9
[2025-11-27 00:18:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:18:37] c7-3-34.aglt2.org
[2025-11-27 00:18:37] apptainer works
[2025-11-27 00:18:37] Set ATHENA_PROC_NUMBER=9
[2025-11-27 00:18:37] Set ATHENA_CORE_NUMBER=9
[2025-11-27 00:18:37] Starting ATLAS job with PandaID=6897509044
[2025-11-27 00:18:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 07:42:49]  *** The last 200 lines of the pilot log: ***
[2025-11-27 07:42:49] 2025-11-27 12:41:51,952 | INFO     | this job has now completed (state=finished)
[2025-11-27 07:42:49] 2025-11-27 12:41:51,952 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-27 07:42:49] 2025-11-27 12:41:51,952 | INFO     | log transfer has been attempted: DONE
[2025-11-27 07:42:49] 2025-11-27 12:41:51,952 | INFO     | job 6897509044 has finished - writing final server update
[2025-11-27 07:42:49] 2025-11-27 12:41:51,953 | INFO     | total number of processed events: 1000 (read)
[2025-11-27 07:42:49] 2025-11-27 12:41:51,964 | INFO     | executing command: lscpu
[2025-11-27 07:42:49] 2025-11-27 12:41:52,040 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-27 07:42:49] 2025-11-27 12:41:53,141 | INFO     | monitor loop #1653: job 0:6897509044 is in state 'finished'
[2025-11-27 07:42:49] 2025-11-27 12:41:53,141 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 07:42:49] 2025-11-27 12:41:53,446 | INFO     | time since job start (26576s) is within the limit (172800.0s)
[2025-11-27 07:42:49] 2025-11-27 12:41:55,452 | INFO     | time since job start (26578s) is within the limit (172800.0s)
[2025-11-27 07:42:49] 2025-11-27 12:41:55,645 | INFO     | monitor loop #1654: job 0:6897509044 is in state 'finished'
[2025-11-27 07:42:49] 2025-11-27 12:41:55,645 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 07:42:49] 2025-11-27 12:41:57,458 | INFO     | time since job start (26580s) is within the limit (172800.0s)
[2025-11-27 07:42:49] 2025-11-27 12:41:58,151 | INFO     | monitor loop #1655: job 0:6897509044 is in state 'finished'
[2025-11-27 07:42:49] 2025-11-27 12:41:58,152 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 07:42:49] 2025-11-27 12:41:58,269 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 07:42:49] 2025-11-27 12:41:58,289 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3305.4273437499983
[2025-11-27 07:42:49] 2025-11-27 12:41:58,316 | INFO     | using path: /tmp/boinchome/slots/8/PanDA_Pilot-6897509044/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 07:42:49] 2025-11-27 12:41:58,317 | INFO     | extracted standard info from prmon json
[2025-11-27 07:42:49] 2025-11-27 12:41:58,317 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 07:42:49] 2025-11-27 12:41:58,317 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 07:42:49] 2025-11-27 12:41:58,321 | INFO     | fitting pss+swap vs Time
[2025-11-27 07:42:49] 2025-11-27 12:41:58,322 | INFO     | sum of square deviations: 25523380257.011406
[2025-11-27 07:42:49] 2025-11-27 12:41:58,324 | INFO     | sum of deviations: 2291080723094.897
[2025-11-27 07:42:49] 2025-11-27 12:41:58,324 | INFO     | mean x: 1764234018.4367816
[2025-11-27 07:42:49] 2025-11-27 12:41:58,324 | INFO     | mean y: 5336629.068965517
[2025-11-27 07:42:49] 2025-11-27 12:41:58,324 | INFO     | intersect: -158359367025.66727
[2025-11-27 07:42:49] 2025-11-27 12:41:58,325 | INFO     | chi2: 14.861284031404848
[2025-11-27 07:42:49] 2025-11-27 12:41:58,325 | INFO     | sum of square deviations: 24653384683.54645
[2025-11-27 07:42:49] 2025-11-27 12:41:58,327 | INFO     | sum of deviations: 2561905943695.6533
[2025-11-27 07:42:49] 2025-11-27 12:41:58,328 | INFO     | mean x: 1764233865.9418604
[2025-11-27 07:42:49] 2025-11-27 12:41:58,328 | INFO     | mean y: 5384063.386046512
[2025-11-27 07:42:49] 2025-11-27 12:41:58,328 | INFO     | intersect: -183328518572.79462
[2025-11-27 07:42:49] 2025-11-27 12:41:58,328 | INFO     | chi2: 11.318502744546624
[2025-11-27 07:42:49] 2025-11-27 12:41:58,328 | INFO     | current chi2=11.318502744546624 (change=23.838998564132297 %)
[2025-11-27 07:42:49] 2025-11-27 12:41:58,328 | INFO     | right removable region: 429
[2025-11-27 07:42:49] 2025-11-27 12:41:58,328 | INFO     | sum of square deviations: 24653295074.427948
[2025-11-27 07:42:49] 2025-11-27 12:41:58,333 | INFO     | sum of deviations: 2012056314361.1675
[2025-11-27 07:42:49] 2025-11-27 12:41:58,333 | INFO     | mean x: 1764234170.939535
[2025-11-27 07:42:49] 2025-11-27 12:41:58,333 | INFO     | mean y: 5385476.737209302
[2025-11-27 07:42:49] 2025-11-27 12:41:58,333 | INFO     | intersect: -143980986038.0652
[2025-11-27 07:42:49] 2025-11-27 12:41:58,334 | INFO     | chi2: 11.85914235777853
[2025-11-27 07:42:49] 2025-11-27 12:41:58,334 | INFO     | current chi2=11.85914235777853 (change=20.201092094614403 %)
[2025-11-27 07:42:49] 2025-11-27 12:41:58,334 | INFO     | left removable region: 10
[2025-11-27 07:42:49] 2025-11-27 12:41:58,334 | INFO     | sum of square deviations: 22809314451.5417
[2025-11-27 07:42:49] 2025-11-27 12:41:58,338 | INFO     | sum of deviations: 2134449458047.934
[2025-11-27 07:42:49] 2025-11-27 12:41:58,338 | INFO     | mean x: 1764234140.4463007
[2025-11-27 07:42:49] 2025-11-27 12:41:58,338 | INFO     | mean y: 5472399.085918854
[2025-11-27 07:42:49] 2025-11-27 12:41:58,338 | INFO     | intersect: -165087985931.08084
[2025-11-27 07:42:49] 2025-11-27 12:41:58,339 | INFO     | chi2: 7.259435266161459
[2025-11-27 07:42:49] 2025-11-27 12:41:58,339 | INFO     | current memory leak: 93.58 B/s (using 419 data points, chi2=7.26)
[2025-11-27 07:42:49] 2025-11-27 12:41:58,340 | INFO     | could have reported an average CPU frequency of 3214 MHz (18 samples)
[2025-11-27 07:42:49] 2025-11-27 12:41:58,340 | INFO     | ..............................
[2025-11-27 07:42:49] 2025-11-27 12:41:58,340 | INFO     | . Timing measurements:
[2025-11-27 07:42:49] 2025-11-27 12:41:58,340 | INFO     | . get job = 0 s
[2025-11-27 07:42:49] 2025-11-27 12:41:58,340 | INFO     | . initial setup = 2 s
[2025-11-27 07:42:49] 2025-11-27 12:41:58,340 | INFO     | . payload setup = 12 s
[2025-11-27 07:42:49] 2025-11-27 12:41:58,341 | INFO     | . stage-in = 0 s
[2025-11-27 07:42:49] 2025-11-27 12:41:58,341 | INFO     | . payload execution = 26533 s
[2025-11-27 07:42:49] 2025-11-27 12:41:58,341 | INFO     | . stage-out = 3 s
[2025-11-27 07:42:49] 2025-11-27 12:41:58,341 | INFO     | . log creation = 0 s
[2025-11-27 07:42:49] 2025-11-27 12:41:58,341 | INFO     | ..............................
[2025-11-27 07:42:49] 2025-11-27 12:41:58,423 | INFO     | 
[2025-11-27 07:42:49] 2025-11-27 12:41:58,423 | INFO     | job summary report
[2025-11-27 07:42:49] 2025-11-27 12:41:58,424 | INFO     | --------------------------------------------------
[2025-11-27 07:42:49] 2025-11-27 12:41:58,424 | INFO     | PanDA job id: 6897509044
[2025-11-27 07:42:49] 2025-11-27 12:41:58,424 | INFO     | task id: 47556161
[2025-11-27 07:42:49] 2025-11-27 12:41:58,424 | INFO     | errors: (none)
[2025-11-27 07:42:49] 2025-11-27 12:41:58,424 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 07:42:49] 2025-11-27 12:41:58,424 | INFO     | pilot state: finished 
[2025-11-27 07:42:49] 2025-11-27 12:41:58,424 | INFO     | transexitcode: 0
[2025-11-27 07:42:49] 2025-11-27 12:41:58,424 | INFO     | exeerrorcode: 0
[2025-11-27 07:42:49] 2025-11-27 12:41:58,424 | INFO     | exeerrordiag: 
[2025-11-27 07:42:49] 2025-11-27 12:41:58,424 | INFO     | exitcode: 0
[2025-11-27 07:42:49] 2025-11-27 12:41:58,424 | INFO     | exitmsg: OK
[2025-11-27 07:42:49] 2025-11-27 12:41:58,424 | INFO     | cpuconsumptiontime: 184807 s
[2025-11-27 07:42:49] 2025-11-27 12:41:58,424 | INFO     | nevents: 1000
[2025-11-27 07:42:49] 2025-11-27 12:41:58,425 | INFO     | neventsw: 0
[2025-11-27 07:42:49] 2025-11-27 12:41:58,425 | INFO     | pid: 3910489
[2025-11-27 07:42:49] 2025-11-27 12:41:58,425 | INFO     | pgrp: 3910489
[2025-11-27 07:42:49] 2025-11-27 12:41:58,425 | INFO     | corecount: 9
[2025-11-27 07:42:49] 2025-11-27 12:41:58,425 | INFO     | event service: False
[2025-11-27 07:42:49] 2025-11-27 12:41:58,425 | INFO     | sizes: {0: 2284265, 11: 2284555, 26550: 2322022, 26554: 2331016, 26555: 2331072, 26562: 2331318}
[2025-11-27 07:42:49] 2025-11-27 12:41:58,425 | INFO     | --------------------------------------------------
[2025-11-27 07:42:49] 2025-11-27 12:41:58,425 | INFO     | 
[2025-11-27 07:42:49] 2025-11-27 12:41:58,425 | INFO     | executing command: ls -lF /tmp/boinchome/slots/8
[2025-11-27 07:42:49] 2025-11-27 12:41:58,464 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 07:42:49] 2025-11-27 12:41:58,464 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 07:42:49] 2025-11-27 12:41:58,465 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 07:42:49] 2025-11-27 12:41:58,465 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 07:42:49] 2025-11-27 12:41:58,465 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 07:42:49] 2025-11-27 12:41:58,465 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 07:42:49] 2025-11-27 12:41:58,465 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 07:42:49] 2025-11-27 12:41:58,465 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 07:42:49] 2025-11-27 12:41:58,465 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 07:42:49] 2025-11-27 12:41:58,465 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 07:42:49] 2025-11-27 12:41:58,465 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 07:42:49] 2025-11-27 12:41:58,465 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 07:42:49] 2025-11-27 12:41:58,465 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 07:42:49] 2025-11-27 12:41:58,465 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 07:42:49] 2025-11-27 12:41:58,466 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 07:42:49] 2025-11-27 12:41:58,466 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 07:42:49] 2025-11-27 12:41:58,466 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 07:42:49] 2025-11-27 12:41:58,466 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 07:42:49] 2025-11-27 12:41:58,466 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 07:42:49] 2025-11-27 12:41:58,466 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 07:42:49] 2025-11-27 12:41:58,466 | INFO     | job 6897509044 has completed (purged errors)
[2025-11-27 07:42:49] 2025-11-27 12:41:58,466 | INFO     | overall cleanup function is called
[2025-11-27 07:42:49] 2025-11-27 12:41:59,484 | INFO     | --- collectZombieJob: --- 10, [3910489]
[2025-11-27 07:42:49] 2025-11-27 12:41:59,485 | INFO     | zombie collector waiting for pid 3910489
[2025-11-27 07:42:49] 2025-11-27 12:41:59,485 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 07:42:49] 2025-11-27 12:41:59,485 | INFO     | collected zombie processes
[2025-11-27 07:42:49] 2025-11-27 12:41:59,485 | INFO     | will attempt to kill all subprocesses of pid=3910489
[2025-11-27 07:42:49] 2025-11-27 12:42:00,263 | INFO     | process IDs to be killed: [3910489] (in reverse order)
[2025-11-27 07:42:49] 2025-11-27 12:42:00,521 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 07:42:49] 2025-11-27 12:42:00,522 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 07:42:49] 2025-11-27 12:42:00,554 | INFO     | did not find any defunct processes belonging to 3910489
[2025-11-27 07:42:49] 2025-11-27 12:42:00,585 | INFO     | did not find any defunct processes belonging to 3910489
[2025-11-27 07:42:49] 2025-11-27 12:42:00,589 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 07:42:49] 2025-11-27 12:42:00,590 | INFO     | ready for new job
[2025-11-27 07:42:49] 2025-11-27 12:42:00,590 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 07:42:49] 2025-11-27 12:42:00,592 | INFO     | ***************************************
[2025-11-27 07:42:49] 2025-11-27 12:42:00,592 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 07:42:49] 2025-11-27 12:42:00,592 | INFO     | ***************************************
[2025-11-27 07:42:49] 2025-11-27 12:42:00,593 | INFO     | 
[2025-11-27 07:42:49] 2025-11-27 12:42:00,597 | INFO     | architecture information:
[2025-11-27 07:42:49] 2025-11-27 12:42:00,598 | INFO     | executing command: cat /etc/os-release
[2025-11-27 07:42:49] 2025-11-27 12:42:00,619 | INFO     | cat /etc/os-release:
[2025-11-27 07:42:49] NAME="CentOS Linux"
[2025-11-27 07:42:49] VERSION="7 (Core)"
[2025-11-27 07:42:49] ID="centos"
[2025-11-27 07:42:49] ID_LIKE="rhel fedora"
[2025-11-27 07:42:49] VERSION_ID="7"
[2025-11-27 07:42:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 07:42:49] ANSI_COLOR="0;31"
[2025-11-27 07:42:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 07:42:49] HOME_URL="https://www.centos.org/"
[2025-11-27 07:42:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 07:42:49] 
[2025-11-27 07:42:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 07:42:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 07:42:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 07:42:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 07:42:49] 
[2025-11-27 07:42:49] 2025-11-27 12:42:00,620 | INFO     | ***************************************
[2025-11-27 07:42:49] 2025-11-27 12:42:01,124 | INFO     | executing command: df -mP /tmp/boinchome/slots/8
[2025-11-27 07:42:49] 2025-11-27 12:42:01,148 | INFO     | sufficient remaining disk space (65237155840 B)
[2025-11-27 07:42:49] 2025-11-27 12:42:01,149 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 07:42:49] 2025-11-27 12:42:01,149 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 07:42:49] 2025-11-27 12:42:01,149 | INFO     | update_server=False
[2025-11-27 07:42:49] 2025-11-27 12:42:01,149 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 07:42:49] 2025-11-27 12:42:01,149 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 07:42:49] 2025-11-27 12:42:01,491 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 07:42:49] 2025-11-27 12:42:01,661 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 07:42:49] 2025-11-27 12:42:01,661 | INFO     | aborting loop
[2025-11-27 07:42:49] 2025-11-27 12:42:01,727 | INFO     | all payload control threads have been joined
[2025-11-27 07:42:49] 2025-11-27 12:42:01,731 | INFO     | all data control threads have been joined
[2025-11-27 07:42:49] 2025-11-27 12:42:02,158 | INFO     | [job] retrieve thread has finished
[2025-11-27 07:42:49] 2025-11-27 12:42:02,219 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 07:42:49] 2025-11-27 12:42:02,390 | INFO     | [job] validate thread has finished
[2025-11-27 07:42:49] 2025-11-27 12:42:02,463 | INFO     | all job control threads have been joined
[2025-11-27 07:42:49] 2025-11-27 12:42:02,490 | INFO     | [data] copytool_in thread has finished
[2025-11-27 07:42:49] 2025-11-27 12:42:02,668 | INFO     | [job] job monitor thread has finished
[2025-11-27 07:42:49] 2025-11-27 12:42:02,733 | INFO     | [payload] control thread has finished
[2025-11-27 07:42:49] 2025-11-27 12:42:02,735 | INFO     | [data] control thread has finished
[2025-11-27 07:42:49] 2025-11-27 12:42:02,754 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 07:42:49] 2025-11-27 12:42:03,164 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 07:42:49] 2025-11-27 12:42:03,164 | INFO     | [data] copytool_out thread has finished
[2025-11-27 07:42:49] 2025-11-27 12:42:03,337 | INFO     | [payload] validate_post thread has finished
[2025-11-27 07:42:49] 2025-11-27 12:42:03,446 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 07:42:49] 2025-11-27 12:42:03,468 | INFO     | [job] control thread has finished
[2025-11-27 07:42:49] 2025-11-27 12:42:03,654 | INFO     | [payload] failed_post thread has finished
[2025-11-27 07:42:49] 2025-11-27 12:42:04,452 | INFO     | [job] queue monitor thread has finished
[2025-11-27 07:42:49] 2025-11-27 12:42:05,499 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 07:42:49] 2025-11-27 12:42:12,097 | INFO     | job.realtimelogging is not enabled
[2025-11-27 07:42:49] 2025-11-27 12:42:13,102 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 07:42:49] 2025-11-27 12:42:31,421 | INFO     | PID=3891478 has CPU usage=7.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 07:42:49] 2025-11-27 12:42:31,422 | INFO     | .. there are 88 such processes running
[2025-11-27 07:42:49] 2025-11-27 12:42:31,422 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 07:42:49] 2025-11-27 12:42:31,422 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 07:42:49] 2025-11-27 12:42:31,422 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 07:42:49] 2025-11-27 12:42:42,981 | INFO     | [monitor] cgroup control has ended
[2025-11-27 07:42:49] 2025-11-27 12:42:43,962 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139894702401344)>', '<ExcThread(monitor, started 139894349338368)>']
[2025-11-27 07:42:49] 2025-11-27 12:42:44,504 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 07:42:49] 2025-11-27 12:42:44,504 | INFO     | [monitor] control thread has ended
[2025-11-27 07:42:49] 2025-11-27 12:42:48,988 | INFO     | all workflow threads have been joined
[2025-11-27 07:42:49] 2025-11-27 12:42:48,989 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 07:42:49] 2025-11-27 12:42:48,989 | INFO     | traces error code: 0
[2025-11-27 07:42:49] 2025-11-27 12:42:48,989 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 07:42:49] 2025-11-27 12:42:49,155 [wrapper] ==== pilot stdout END ====
[2025-11-27 07:42:49] 2025-11-27 12:42:49,159 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 07:42:49] 2025-11-27 12:42:49,161 [wrapper] pilotpid: 3891478
[2025-11-27 07:42:49] 2025-11-27 12:42:49,164 [wrapper] Pilot exit status: 0
[2025-11-27 07:42:49] 2025-11-27 12:42:49,177 [wrapper] pandaids: 6897509044
[2025-11-27 07:42:49] 2025-11-27 12:42:49,342 [wrapper] cleanup supervisor_pilot 3169558 3891479
[2025-11-27 07:42:49] 2025-11-27 12:42:49,346 [wrapper] Test setup, not cleaning
[2025-11-27 07:42:49] 2025-11-27 12:42:49,351 [wrapper] apfmon messages muted
[2025-11-27 07:42:49] 2025-11-27 12:42:49,355 [wrapper] ==== wrapper stdout END ====
[2025-11-27 07:42:49] 2025-11-27 12:42:49,358 [wrapper] ==== wrapper stderr END ====
[2025-11-27 07:42:49]  *** Error codes and diagnostics ***
[2025-11-27 07:42:49]     "exeErrorCode": 0,
[2025-11-27 07:42:49]     "exeErrorDiag": "",
[2025-11-27 07:42:49]     "pilotErrorCode": 0,
[2025-11-27 07:42:49]     "pilotErrorDiag": "",
[2025-11-27 07:42:49]  *** Listing of results directory ***
[2025-11-27 07:42:49] total 1291292
[2025-11-27 07:42:49] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-27 07:42:49] -rwx------. 1 boincer umatlas     36292 Nov 25 12:01 runpilot2-wrapper.sh
[2025-11-27 07:42:49] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 12:02 queuedata.json
[2025-11-27 07:42:49] -rw-r--r--. 1 boincer umatlas       100 Nov 27 00:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 07:42:49] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 00:18 run_atlas
[2025-11-27 07:42:49] -rw-r--r--. 1 boincer umatlas       105 Nov 27 00:18 job.xml
[2025-11-27 07:42:49] -rw-r--r--. 2 boincer umatlas 409257218 Nov 27 00:18 EVNT.47483658._002282.pool.root.1
[2025-11-27 07:42:49] -rw-r--r--. 2 boincer umatlas    590106 Nov 27 00:18 input.tar.gz
[2025-11-27 07:42:49] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:18 start_atlas.sh
[2025-11-27 07:42:49] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 00:18 shared
[2025-11-27 07:42:49] -rw-r--r--. 1 boincer umatlas         0 Nov 27 00:18 boinc_lockfile
[2025-11-27 07:42:49] -rw-r--r--. 1 boincer umatlas      2786 Nov 27 00:18 pandaJob.out
[2025-11-27 07:42:49] -rw-------. 1 boincer umatlas        57 Nov 27 00:18 setup.sh.local
[2025-11-27 07:42:49] -rw-------. 1 boincer umatlas    991578 Nov 27 00:18 agis_schedconf.cvmfs.json
[2025-11-27 07:42:49] drwx------. 5 boincer umatlas      4096 Nov 27 00:18 pilot3
[2025-11-27 07:42:49] -rw-r--r--. 1 boincer umatlas       533 Nov 27 07:34 boinc_task_state.xml
[2025-11-27 07:42:49] -rw-r--r--. 1 boincer umatlas      6947 Nov 27 07:39 init_data.xml
[2025-11-27 07:42:49] -rw-------. 1 boincer umatlas 898508179 Nov 27 07:41 HITS.47556161._002660.pool.root.1
[2025-11-27 07:42:49] -rw-------. 1 boincer umatlas      1076 Nov 27 07:41 memory_monitor_summary.json
[2025-11-27 07:42:49] -rw-------. 1 boincer umatlas   1516240 Nov 27 07:41 agis_ddmendpoints.agis.ALL.json
[2025-11-27 07:42:49] -rw-------. 1 boincer umatlas   1839527 Nov 27 07:41 log.47556161._002660.job.log.tgz.1
[2025-11-27 07:42:49] -rw-------. 1 boincer umatlas      8637 Nov 27 07:41 heartbeat.json
[2025-11-27 07:42:49] -rw-------. 1 boincer umatlas        95 Nov 27 07:42 pilot_heartbeat.json
[2025-11-27 07:42:49] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 07:42 boinc_mmap_file
[2025-11-27 07:42:49] -rw-r--r--. 1 boincer umatlas        29 Nov 27 07:42 wrapper_checkpoint.txt
[2025-11-27 07:42:49] -rw-------. 1 boincer umatlas      4896 Nov 27 07:42 pilotlog.txt
[2025-11-27 07:42:49] -rw-------. 1 boincer umatlas   3453811 Nov 27 07:42 log.47556161._002660.job.log.1
[2025-11-27 07:42:49] -rw-------. 1 boincer umatlas       353 Nov 27 07:42 output.list
[2025-11-27 07:42:49] -rw-r--r--. 1 boincer umatlas       620 Nov 27 07:42 runtime_log
[2025-11-27 07:42:49] -rw-------. 1 boincer umatlas   5314560 Nov 27 07:42 result.tar.gz
[2025-11-27 07:42:49] -rw-r--r--. 1 boincer umatlas      9338 Nov 27 07:42 runtime_log.err
[2025-11-27 07:42:49] -rw-------. 1 boincer umatlas       664 Nov 27 07:42 4yyKDm6aBi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmyZMKDm3OZpQm.diag
[2025-11-27 07:42:49] -rw-r--r--. 1 boincer umatlas     21709 Nov 27 07:42 stderr.txt
[2025-11-27 07:42:49] HITS file was successfully produced:
[2025-11-27 07:42:49] -rw-------. 1 boincer umatlas 898508179 Nov 27 07:41 shared/HITS.pool.root.1
[2025-11-27 07:42:49]  *** Contents of shared directory: ***
[2025-11-27 07:42:49] total 1282916
[2025-11-27 07:42:49] -rw-r--r--. 2 boincer umatlas 409257218 Nov 27 00:18 ATLAS.root_0
[2025-11-27 07:42:49] -rw-r--r--. 2 boincer umatlas    590106 Nov 27 00:18 input.tar.gz
[2025-11-27 07:42:49] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:18 start_atlas.sh
[2025-11-27 07:42:49] -rw-------. 1 boincer umatlas 898508179 Nov 27 07:41 HITS.pool.root.1
[2025-11-27 07:42:49] -rw-------. 1 boincer umatlas   5314560 Nov 27 07:42 result.tar.gz
07:42:51 (3883713): run_atlas exited; CPU time 185541.627013
07:42:51 (3883713): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN