Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:16:40 (191126): wrapper (7.7.26015): starting
00:16:40 (191126): wrapper: running run_atlas (--nthreads 9)
[2025-11-27 00:16:40] Arguments: --nthreads 9
[2025-11-27 00:16:40] Threads: 9
[2025-11-27 00:16:40] Checking for CVMFS
[2025-11-27 00:16:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:16:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:16:42] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:16:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:16:43] 2.13.3.0 12130 29362 356672 153348 2 273 37364717 40960001 22178 16776704 0 97734718 99.654 87721368 35712 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 00:16:43] CVMFS is ok
[2025-11-27 00:16:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:16:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:16:43] Further information can be found at the LHC@home message board.
[2025-11-27 00:16:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:16:43] Checking for apptainer binary...
[2025-11-27 00:16:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:16:43] Running /usr/bin/apptainer --version
[2025-11-27 00:16:43] apptainer version 1.4.4-1.el9
[2025-11-27 00:16:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:16:44] c6-5-7-4.aglt2.org
[2025-11-27 00:16:44] apptainer works
[2025-11-27 00:16:44] Set ATHENA_PROC_NUMBER=9
[2025-11-27 00:16:44] Set ATHENA_CORE_NUMBER=9
[2025-11-27 00:16:45] Starting ATLAS job with PandaID=6898177884
[2025-11-27 00:16:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 22:04:03]  *** The last 200 lines of the pilot log: ***
[2025-11-27 22:04:03] 2025-11-28 03:03:14,413 | INFO     | time since job start (78301s) is within the limit (172800.0s)
[2025-11-27 22:04:03] 2025-11-28 03:03:15,936 | INFO     | monitor loop #4492: job 0:6898177884 is in state 'finished'
[2025-11-27 22:04:03] 2025-11-28 03:03:15,936 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:04:03] 2025-11-28 03:03:16,420 | INFO     | time since job start (78303s) is within the limit (172800.0s)
[2025-11-27 22:04:03] 2025-11-28 03:03:18,441 | INFO     | monitor loop #4493: job 0:6898177884 is in state 'finished'
[2025-11-27 22:04:03] 2025-11-28 03:03:18,441 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:04:03] 2025-11-28 03:03:18,447 | INFO     | time since job start (78305s) is within the limit (172800.0s)
[2025-11-27 22:04:03] 2025-11-28 03:03:20,493 | INFO     | time since job start (78307s) is within the limit (172800.0s)
[2025-11-27 22:04:03] 2025-11-28 03:03:21,012 | INFO     | monitor loop #4494: job 0:6898177884 is in state 'finished'
[2025-11-27 22:04:03] 2025-11-28 03:03:21,012 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:04:03] 2025-11-28 03:03:22,507 | INFO     | time since job start (78309s) is within the limit (172800.0s)
[2025-11-27 22:04:03] 2025-11-28 03:03:23,537 | INFO     | monitor loop #4495: job 0:6898177884 is in state 'finished'
[2025-11-27 22:04:03] 2025-11-28 03:03:23,537 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:04:03] 2025-11-28 03:03:24,514 | INFO     | time since job start (78311s) is within the limit (172800.0s)
[2025-11-27 22:04:03] 2025-11-28 03:03:26,050 | INFO     | monitor loop #4496: job 0:6898177884 is in state 'finished'
[2025-11-27 22:04:03] 2025-11-28 03:03:26,050 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:04:03] 2025-11-28 03:03:26,325 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 22:04:03] 2025-11-28 03:03:26,339 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2749.723928571428
[2025-11-27 22:04:03] 2025-11-28 03:03:26,351 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6898177884/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 22:04:03] 2025-11-28 03:03:26,353 | INFO     | extracted standard info from prmon json
[2025-11-27 22:04:03] 2025-11-28 03:03:26,353 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 22:04:03] 2025-11-28 03:03:26,353 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 22:04:03] 2025-11-28 03:03:26,379 | INFO     | fitting pss+swap vs Time
[2025-11-27 22:04:03] 2025-11-28 03:03:26,381 | INFO     | sum of square deviations: 650248732545.0554
[2025-11-27 22:04:03] 2025-11-28 03:03:26,423 | INFO     | sum of deviations: 3974328042160.1475
[2025-11-27 22:04:03] 2025-11-28 03:03:26,423 | INFO     | mean x: 1764259893.5835938
[2025-11-27 22:04:03] 2025-11-28 03:03:26,424 | INFO     | mean y: 3075087.56875
[2025-11-27 22:04:03] 2025-11-28 03:03:26,424 | INFO     | intersect: -10780102514.768082
[2025-11-27 22:04:03] 2025-11-28 03:03:26,426 | INFO     | chi2: 19.157160677446075
[2025-11-27 22:04:03] 2025-11-28 03:03:26,428 | INFO     | sum of square deviations: 642659059122.327
[2025-11-27 22:04:03] 2025-11-28 03:03:26,461 | INFO     | sum of deviations: 4426049069568.663
[2025-11-27 22:04:03] 2025-11-28 03:03:26,461 | INFO     | mean x: 1764259741.0956862
[2025-11-27 22:04:03] 2025-11-28 03:03:26,461 | INFO     | mean y: 3084161.756862745
[2025-11-27 22:04:03] 2025-11-28 03:03:26,462 | INFO     | intersect: -12147526764.382225
[2025-11-27 22:04:03] 2025-11-28 03:03:26,463 | INFO     | chi2: 15.932775767880093
[2025-11-27 22:04:03] 2025-11-28 03:03:26,463 | INFO     | current chi2=15.932775767880093 (change=16.831225481979093 %)
[2025-11-27 22:04:03] 2025-11-28 03:03:26,463 | INFO     | right removable region: 1274
[2025-11-27 22:04:03] 2025-11-28 03:03:26,464 | INFO     | sum of square deviations: 642656651452.3263
[2025-11-27 22:04:03] 2025-11-28 03:03:26,505 | INFO     | sum of deviations: 3441491254237.468
[2025-11-27 22:04:03] 2025-11-28 03:03:26,505 | INFO     | mean x: 1764260046.0956862
[2025-11-27 22:04:03] 2025-11-28 03:03:26,505 | INFO     | mean y: 3085788.9223529412
[2025-11-27 22:04:03] 2025-11-28 03:03:26,506 | INFO     | intersect: -9444704886.11014
[2025-11-27 22:04:03] 2025-11-28 03:03:26,619 | INFO     | time since job start (78313s) is within the limit (172800.0s)
[2025-11-27 22:04:03] 2025-11-28 03:03:26,636 | INFO     | chi2: 15.299399456904073
[2025-11-27 22:04:03] 2025-11-28 03:03:26,677 | INFO     | current chi2=15.299399456904073 (change=20.137437303450636 %)
[2025-11-27 22:04:03] 2025-11-28 03:03:26,677 | INFO     | left removable region: 10
[2025-11-27 22:04:03] 2025-11-28 03:03:26,679 | INFO     | sum of square deviations: 626165382902.993
[2025-11-27 22:04:03] 2025-11-28 03:03:26,988 | INFO     | sum of deviations: 3542765555981.691
[2025-11-27 22:04:03] 2025-11-28 03:03:26,988 | INFO     | mean x: 1764260015.6226265
[2025-11-27 22:04:03] 2025-11-28 03:03:26,988 | INFO     | mean y: 3105591.940664557
[2025-11-27 22:04:03] 2025-11-28 03:03:26,989 | INFO     | intersect: -9978857298.064518
[2025-11-27 22:04:03] 2025-11-28 03:03:26,990 | INFO     | chi2: 8.94607053075866
[2025-11-27 22:04:03] 2025-11-28 03:03:26,991 | INFO     | current memory leak: 5.66 B/s (using 1264 data points, chi2=8.95)
[2025-11-27 22:04:03] 2025-11-28 03:03:26,993 | INFO     | could have reported an average CPU frequency of 2820 MHz (46 samples)
[2025-11-27 22:04:03] 2025-11-28 03:03:26,993 | INFO     | ..............................
[2025-11-27 22:04:03] 2025-11-28 03:03:26,993 | INFO     | . Timing measurements:
[2025-11-27 22:04:03] 2025-11-28 03:03:26,993 | INFO     | . get job = 0 s
[2025-11-27 22:04:03] 2025-11-28 03:03:26,993 | INFO     | . initial setup = 10 s
[2025-11-27 22:04:03] 2025-11-28 03:03:26,994 | INFO     | . payload setup = 59 s
[2025-11-27 22:04:03] 2025-11-28 03:03:26,994 | INFO     | . stage-in = 1 s
[2025-11-27 22:04:03] 2025-11-28 03:03:26,994 | INFO     | . payload execution = 78105 s
[2025-11-27 22:04:03] 2025-11-28 03:03:26,994 | INFO     | . stage-out = 10 s
[2025-11-27 22:04:03] 2025-11-28 03:03:26,994 | INFO     | . log creation = 2 s
[2025-11-27 22:04:03] 2025-11-28 03:03:26,994 | INFO     | ..............................
[2025-11-27 22:04:03] 2025-11-28 03:03:27,219 | INFO     | 
[2025-11-27 22:04:03] 2025-11-28 03:03:27,219 | INFO     | job summary report
[2025-11-27 22:04:03] 2025-11-28 03:03:27,219 | INFO     | --------------------------------------------------
[2025-11-27 22:04:03] 2025-11-28 03:03:27,219 | INFO     | PanDA job id: 6898177884
[2025-11-27 22:04:03] 2025-11-28 03:03:27,219 | INFO     | task id: 47556173
[2025-11-27 22:04:03] 2025-11-28 03:03:27,220 | INFO     | errors: (none)
[2025-11-27 22:04:03] 2025-11-28 03:03:27,220 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 22:04:03] 2025-11-28 03:03:27,220 | INFO     | pilot state: finished 
[2025-11-27 22:04:03] 2025-11-28 03:03:27,220 | INFO     | transexitcode: 0
[2025-11-27 22:04:03] 2025-11-28 03:03:27,220 | INFO     | exeerrorcode: 0
[2025-11-27 22:04:03] 2025-11-28 03:03:27,220 | INFO     | exeerrordiag: 
[2025-11-27 22:04:03] 2025-11-28 03:03:27,220 | INFO     | exitcode: 0
[2025-11-27 22:04:03] 2025-11-28 03:03:27,220 | INFO     | exitmsg: OK
[2025-11-27 22:04:03] 2025-11-28 03:03:27,220 | INFO     | cpuconsumptiontime: 245938 s
[2025-11-27 22:04:03] 2025-11-28 03:03:27,220 | INFO     | nevents: 1000
[2025-11-27 22:04:03] 2025-11-28 03:03:27,225 | INFO     | neventsw: 0
[2025-11-27 22:04:03] 2025-11-28 03:03:27,225 | INFO     | pid: 215502
[2025-11-27 22:04:03] 2025-11-28 03:03:27,225 | INFO     | pgrp: 215502
[2025-11-27 22:04:03] 2025-11-28 03:03:27,225 | INFO     | corecount: 9
[2025-11-27 22:04:03] 2025-11-28 03:03:27,225 | INFO     | event service: False
[2025-11-27 22:04:03] 2025-11-28 03:03:27,225 | INFO     | sizes: {0: 2284093, 1: 2284292, 13: 2284292, 25: 2284348, 36: 2284376, 47: 2284850, 78170: 2345403, 78171: 2345402, 78182: 2354452, 78185: 2354508, 78223: 2354754}
[2025-11-27 22:04:03] 2025-11-28 03:03:27,226 | INFO     | --------------------------------------------------
[2025-11-27 22:04:03] 2025-11-28 03:03:27,226 | INFO     | 
[2025-11-27 22:04:03] 2025-11-28 03:03:27,226 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-27 22:04:03] 2025-11-28 03:03:27,426 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 22:04:03] 2025-11-28 03:03:27,427 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 22:04:03] 2025-11-28 03:03:27,427 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 22:04:03] 2025-11-28 03:03:27,427 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 22:04:03] 2025-11-28 03:03:27,427 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 22:04:03] 2025-11-28 03:03:27,427 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 22:04:03] 2025-11-28 03:03:27,427 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 22:04:03] 2025-11-28 03:03:27,427 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 22:04:03] 2025-11-28 03:03:27,427 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 22:04:03] 2025-11-28 03:03:27,427 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 22:04:03] 2025-11-28 03:03:27,428 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 22:04:03] 2025-11-28 03:03:27,428 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 22:04:03] 2025-11-28 03:03:27,428 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 22:04:03] 2025-11-28 03:03:27,428 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 22:04:03] 2025-11-28 03:03:27,428 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 22:04:03] 2025-11-28 03:03:27,428 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 22:04:03] 2025-11-28 03:03:27,428 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 22:04:03] 2025-11-28 03:03:27,428 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 22:04:03] 2025-11-28 03:03:27,428 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 22:04:03] 2025-11-28 03:03:27,428 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 22:04:03] 2025-11-28 03:03:27,429 | INFO     | job 6898177884 has completed (purged errors)
[2025-11-27 22:04:03] 2025-11-28 03:03:27,429 | INFO     | overall cleanup function is called
[2025-11-27 22:04:03] 2025-11-28 03:03:28,466 | INFO     | --- collectZombieJob: --- 10, [215502]
[2025-11-27 22:04:03] 2025-11-28 03:03:28,466 | INFO     | zombie collector waiting for pid 215502
[2025-11-27 22:04:03] 2025-11-28 03:03:28,466 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 22:04:03] 2025-11-28 03:03:28,466 | INFO     | collected zombie processes
[2025-11-27 22:04:03] 2025-11-28 03:03:28,466 | INFO     | will attempt to kill all subprocesses of pid=215502
[2025-11-27 22:04:03] 2025-11-28 03:03:29,407 | INFO     | process IDs to be killed: [215502] (in reverse order)
[2025-11-27 22:04:03] 2025-11-28 03:03:29,682 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 22:04:03] 2025-11-28 03:03:29,683 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 22:04:03] 2025-11-28 03:03:29,739 | INFO     | did not find any defunct processes belonging to 215502
[2025-11-27 22:04:03] 2025-11-28 03:03:29,790 | INFO     | did not find any defunct processes belonging to 215502
[2025-11-27 22:04:03] 2025-11-28 03:03:29,805 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 22:04:03] 2025-11-28 03:03:29,805 | INFO     | ready for new job
[2025-11-27 22:04:03] 2025-11-28 03:03:29,805 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 22:04:03] 2025-11-28 03:03:29,824 | INFO     | ***************************************
[2025-11-27 22:04:03] 2025-11-28 03:03:29,824 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 22:04:03] 2025-11-28 03:03:29,824 | INFO     | ***************************************
[2025-11-27 22:04:03] 2025-11-28 03:03:29,824 | INFO     | 
[2025-11-27 22:04:03] 2025-11-28 03:03:29,841 | INFO     | architecture information:
[2025-11-27 22:04:03] 2025-11-28 03:03:29,841 | INFO     | executing command: cat /etc/os-release
[2025-11-27 22:04:03] 2025-11-28 03:03:29,912 | INFO     | cat /etc/os-release:
[2025-11-27 22:04:03] NAME="CentOS Linux"
[2025-11-27 22:04:03] VERSION="7 (Core)"
[2025-11-27 22:04:03] ID="centos"
[2025-11-27 22:04:03] ID_LIKE="rhel fedora"
[2025-11-27 22:04:03] VERSION_ID="7"
[2025-11-27 22:04:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 22:04:03] ANSI_COLOR="0;31"
[2025-11-27 22:04:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 22:04:03] HOME_URL="https://www.centos.org/"
[2025-11-27 22:04:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 22:04:03] 
[2025-11-27 22:04:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 22:04:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 22:04:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 22:04:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 22:04:03] 
[2025-11-27 22:04:03] 2025-11-28 03:03:29,912 | INFO     | ***************************************
[2025-11-27 22:04:03] 2025-11-28 03:03:30,417 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-27 22:04:03] 2025-11-28 03:03:30,627 | INFO     | sufficient remaining disk space (69999788032 B)
[2025-11-27 22:04:03] 2025-11-28 03:03:30,627 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 22:04:03] 2025-11-28 03:03:30,628 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 22:04:03] 2025-11-28 03:03:30,628 | INFO     | update_server=False
[2025-11-27 22:04:03] 2025-11-28 03:03:30,628 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 22:04:03] 2025-11-28 03:03:30,631 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 22:04:03] 2025-11-28 03:03:30,631 | INFO     | aborting loop
[2025-11-27 22:04:03] 2025-11-28 03:03:31,268 | INFO     | all data control threads have been joined
[2025-11-27 22:04:03] 2025-11-28 03:03:31,480 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 22:04:03] 2025-11-28 03:03:31,634 | INFO     | [job] retrieve thread has finished
[2025-11-27 22:04:03] 2025-11-28 03:03:31,637 | INFO     | [job] job monitor thread has finished
[2025-11-27 22:04:03] 2025-11-28 03:03:31,649 | INFO     | [job] validate thread has finished
[2025-11-27 22:04:03] 2025-11-28 03:03:31,676 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 22:04:03] 2025-11-28 03:03:31,676 | INFO     | [data] copytool_in thread has finished
[2025-11-27 22:04:03] 2025-11-28 03:03:31,697 | INFO     | all payload control threads have been joined
[2025-11-27 22:04:03] 2025-11-28 03:03:31,744 | INFO     | all job control threads have been joined
[2025-11-27 22:04:03] 2025-11-28 03:03:31,830 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 22:04:03] 2025-11-28 03:03:31,976 | INFO     | [payload] failed_post thread has finished
[2025-11-27 22:04:03] 2025-11-28 03:03:32,259 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 22:04:03] 2025-11-28 03:03:32,283 | INFO     | [data] control thread has finished
[2025-11-27 22:04:03] 2025-11-28 03:03:32,545 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 22:04:03] 2025-11-28 03:03:32,570 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 22:04:03] 2025-11-28 03:03:32,632 | INFO     | [payload] validate_post thread has finished
[2025-11-27 22:04:03] 2025-11-28 03:03:32,703 | INFO     | [payload] control thread has finished
[2025-11-27 22:04:03] 2025-11-28 03:03:32,750 | INFO     | [job] control thread has finished
[2025-11-27 22:04:03] 2025-11-28 03:03:33,130 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 22:04:03] 2025-11-28 03:03:33,265 | INFO     | [job] queue monitor thread has finished
[2025-11-27 22:04:03] 2025-11-28 03:03:33,852 | INFO     | [data] copytool_out thread has finished
[2025-11-27 22:04:03] 2025-11-28 03:03:35,498 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 22:04:03] 2025-11-28 03:03:37,348 | INFO     | [monitor] cgroup control has ended
[2025-11-27 22:04:03] 2025-11-28 03:03:38,973 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139711904044864)>', '<ExcThread(monitor, started 139711544792832)>']
[2025-11-27 22:04:03] 2025-11-28 03:03:44,003 | INFO     | all workflow threads have been joined
[2025-11-27 22:04:03] 2025-11-28 03:03:44,003 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 22:04:03] 2025-11-28 03:03:44,003 | INFO     | traces error code: 0
[2025-11-27 22:04:03] 2025-11-28 03:03:44,003 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 22:04:03] 2025-11-28 03:04:01,399 | INFO     | PID=200784 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 22:04:03] 2025-11-28 03:04:01,401 | INFO     | .. there are 25 such processes running
[2025-11-27 22:04:03] 2025-11-28 03:04:01,406 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 22:04:03] 2025-11-28 03:04:01,406 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 22:04:03] 2025-11-28 03:04:01,406 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 22:04:03] 2025-11-28 03:04:01,406 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 22:04:03] 2025-11-28 03:04:01,406 | INFO     | [monitor] control thread has ended
[2025-11-27 22:04:03] 2025-11-28 03:04:01,688 [wrapper] ==== pilot stdout END ====
[2025-11-27 22:04:03] 2025-11-28 03:04:01,746 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 22:04:03] 2025-11-28 03:04:01,770 [wrapper] pilotpid: 200784
[2025-11-27 22:04:03] 2025-11-28 03:04:01,820 [wrapper] Pilot exit status: 0
[2025-11-27 22:04:03] 2025-11-28 03:04:01,943 [wrapper] pandaids: 6898177884
[2025-11-27 22:04:03] 2025-11-28 03:04:02,817 [wrapper] cleanup supervisor_pilot 3709746 200785
[2025-11-27 22:04:03] 2025-11-28 03:04:02,843 [wrapper] Test setup, not cleaning
[2025-11-27 22:04:03] 2025-11-28 03:04:02,887 [wrapper] apfmon messages muted
[2025-11-27 22:04:03] 2025-11-28 03:04:02,906 [wrapper] ==== wrapper stdout END ====
[2025-11-27 22:04:03] 2025-11-28 03:04:02,910 [wrapper] ==== wrapper stderr END ====
[2025-11-27 22:04:03]  *** Error codes and diagnostics ***
[2025-11-27 22:04:03]     "exeErrorCode": 0,
[2025-11-27 22:04:03]     "exeErrorDiag": "",
[2025-11-27 22:04:03]     "pilotErrorCode": 0,
[2025-11-27 22:04:03]     "pilotErrorDiag": "",
[2025-11-27 22:04:03]  *** Listing of results directory ***
[2025-11-27 22:04:03] total 1334452
[2025-11-27 22:04:03] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 22:33 pilot3.tar.gz
[2025-11-27 22:04:03] -rwx------. 1 boincer umatlas     36292 Nov 25 23:06 runpilot2-wrapper.sh
[2025-11-27 22:04:03] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 23:06 queuedata.json
[2025-11-27 22:04:03] -rw-r--r--. 1 boincer umatlas       100 Nov 27 00:16 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 22:04:03] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 00:16 run_atlas
[2025-11-27 22:04:03] -rw-r--r--. 1 boincer umatlas       105 Nov 27 00:16 job.xml
[2025-11-27 22:04:03] -rw-r--r--. 2 boincer umatlas 408307960 Nov 27 00:16 EVNT.47483658._003172.pool.root.1
[2025-11-27 22:04:03] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 00:16 shared
[2025-11-27 22:04:03] -rw-r--r--. 2 boincer umatlas    590101 Nov 27 00:16 input.tar.gz
[2025-11-27 22:04:03] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:16 start_atlas.sh
[2025-11-27 22:04:03] -rw-r--r--. 1 boincer umatlas         0 Nov 27 00:16 boinc_lockfile
[2025-11-27 22:04:03] -rw-r--r--. 1 boincer umatlas      2785 Nov 27 00:16 pandaJob.out
[2025-11-27 22:04:03] -rw-------. 1 boincer umatlas        57 Nov 27 00:16 setup.sh.local
[2025-11-27 22:04:03] -rw-------. 1 boincer umatlas    991570 Nov 27 00:18 agis_schedconf.cvmfs.json
[2025-11-27 22:04:03] drwx------. 5 boincer umatlas      4096 Nov 27 00:18 pilot3
[2025-11-27 22:04:03] -rw-r--r--. 1 boincer umatlas       533 Nov 27 21:32 boinc_task_state.xml
[2025-11-27 22:04:03] -rw-------. 1 boincer umatlas 930222272 Nov 27 22:01 HITS.47556173._001289.pool.root.1
[2025-11-27 22:04:03] -rw-r--r--. 1 boincer umatlas      6841 Nov 27 22:01 init_data.xml
[2025-11-27 22:04:03] -rw-------. 1 boincer umatlas      1058 Nov 27 22:02 memory_monitor_summary.json
[2025-11-27 22:04:03] -rw-------. 1 boincer umatlas   1516240 Nov 27 22:02 agis_ddmendpoints.agis.ALL.json
[2025-11-27 22:04:03] -rw-------. 1 boincer umatlas   2443673 Nov 27 22:02 log.47556173._001289.job.log.tgz.1
[2025-11-27 22:04:03] -rw-------. 1 boincer umatlas      8631 Nov 27 22:03 heartbeat.json
[2025-11-27 22:04:03] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 22:03 boinc_mmap_file
[2025-11-27 22:04:03] -rw-r--r--. 1 boincer umatlas        29 Nov 27 22:04 wrapper_checkpoint.txt
[2025-11-27 22:04:03] -rw-------. 1 boincer umatlas        95 Nov 27 22:04 pilot_heartbeat.json
[2025-11-27 22:04:03] -rw-------. 1 boincer umatlas       822 Nov 27 22:04 pilotlog.txt
[2025-11-27 22:04:03] -rw-------. 1 boincer umatlas   9571508 Nov 27 22:04 log.47556173._001289.job.log.1
[2025-11-27 22:04:03] -rw-------. 1 boincer umatlas       353 Nov 27 22:04 output.list
[2025-11-27 22:04:03] -rw-r--r--. 1 boincer umatlas       620 Nov 27 22:04 runtime_log
[2025-11-27 22:04:03] -rw-------. 1 boincer umatlas  12032000 Nov 27 22:04 result.tar.gz
[2025-11-27 22:04:03] -rw-r--r--. 1 boincer umatlas      9343 Nov 27 22:04 runtime_log.err
[2025-11-27 22:04:03] -rw-------. 1 boincer umatlas       660 Nov 27 22:04 I1zNDmtyLi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmetJKDmcup7sn.diag
[2025-11-27 22:04:03] -rw-r--r--. 1 boincer umatlas     21799 Nov 27 22:04 stderr.txt
[2025-11-27 22:04:03] HITS file was successfully produced:
[2025-11-27 22:04:03] -rw-------. 1 boincer umatlas 930222272 Nov 27 22:01 shared/HITS.pool.root.1
[2025-11-27 22:04:03]  *** Contents of shared directory: ***
[2025-11-27 22:04:03] total 1319520
[2025-11-27 22:04:03] -rw-r--r--. 2 boincer umatlas 408307960 Nov 27 00:16 ATLAS.root_0
[2025-11-27 22:04:03] -rw-r--r--. 2 boincer umatlas    590101 Nov 27 00:16 input.tar.gz
[2025-11-27 22:04:03] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:16 start_atlas.sh
[2025-11-27 22:04:03] -rw-------. 1 boincer umatlas 930222272 Nov 27 22:01 HITS.pool.root.1
[2025-11-27 22:04:03] -rw-------. 1 boincer umatlas  12032000 Nov 27 22:04 result.tar.gz
22:04:26 (191126): run_atlas exited; CPU time 247510.810853
22:04:26 (191126): called boinc_finish(0)

</stderr_txt>
]]>

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