Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
04:50:50 (1479269): wrapper (7.7.26015): starting
04:50:50 (1479269): wrapper: running run_atlas (--nthreads 9)
[2025-11-27 04:50:50] Arguments: --nthreads 9
[2025-11-27 04:50:50] Threads: 9
[2025-11-27 04:50:50] Checking for CVMFS
[2025-11-27 04:50:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 04:50:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 04:50:50] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 04:50:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 04:50:51] 2.13.2.0 8790 37121 263608 153358 2 339 21281542 40960000 11326 16776704 0 37390580 99.663 31680434 39218 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 04:50:51] CVMFS is ok
[2025-11-27 04:50:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 04:50:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 04:50:51] Further information can be found at the LHC@home message board.
[2025-11-27 04:50:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 04:50:51] Checking for apptainer binary...
[2025-11-27 04:50:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 04:50:51] Running /usr/bin/apptainer --version
[2025-11-27 04:50:51] apptainer version 1.4.4-1.el9
[2025-11-27 04:50:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 04:50:51] c-210-33-1.aglt2.org
[2025-11-27 04:50:51] apptainer works
[2025-11-27 04:50:51] Set ATHENA_PROC_NUMBER=9
[2025-11-27 04:50:51] Set ATHENA_CORE_NUMBER=9
[2025-11-27 04:50:51] Starting ATLAS job with PandaID=6898178698
[2025-11-27 04:50:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 23:49:05]  *** The last 200 lines of the pilot log: ***
[2025-11-27 23:49:05] 2025-11-28 04:48:29,561 | INFO     | monitor loop #4550: job 0:6898178698 is in state 'finished'
[2025-11-27 23:49:05] 2025-11-28 04:48:29,561 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:49:05] 2025-11-28 04:48:29,588 | INFO     | time since job start (68212s) is within the limit (172800.0s)
[2025-11-27 23:49:05] 2025-11-28 04:48:30,496 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 23:49:05] 2025-11-28 04:48:30,504 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2800.015142857143
[2025-11-27 23:49:05] 2025-11-28 04:48:30,514 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6898178698/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 23:49:05] 2025-11-28 04:48:30,514 | INFO     | extracted standard info from prmon json
[2025-11-27 23:49:05] 2025-11-28 04:48:30,515 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 23:49:05] 2025-11-28 04:48:30,515 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 23:49:05] 2025-11-28 04:48:30,533 | INFO     | fitting pss+swap vs Time
[2025-11-27 23:49:05] 2025-11-28 04:48:30,537 | INFO     | sum of square deviations: 432148871435.5593
[2025-11-27 23:49:05] 2025-11-28 04:48:30,593 | INFO     | sum of deviations: 3546203482147.076
[2025-11-27 23:49:05] 2025-11-28 04:48:30,593 | INFO     | mean x: 1764271186.7896152
[2025-11-27 23:49:05] 2025-11-28 04:48:30,594 | INFO     | mean y: 3102358.1790510295
[2025-11-27 23:49:05] 2025-11-28 04:48:30,594 | INFO     | intersect: -14474465534.713228
[2025-11-27 23:49:05] 2025-11-28 04:48:30,595 | INFO     | chi2: 7.768929401651992
[2025-11-27 23:49:05] 2025-11-28 04:48:30,596 | INFO     | sum of square deviations: 426372107674.47504
[2025-11-27 23:49:05] 2025-11-28 04:48:30,638 | INFO     | sum of deviations: 3955396106029.3247
[2025-11-27 23:49:05] 2025-11-28 04:48:30,638 | INFO     | mean x: 1764271034.2976618
[2025-11-27 23:49:05] 2025-11-28 04:48:30,642 | INFO     | mean y: 3113162.1258992804
[2025-11-27 23:49:05] 2025-11-28 04:48:30,642 | INFO     | intersect: -16363789488.00978
[2025-11-27 23:49:05] 2025-11-28 04:48:30,644 | INFO     | chi2: 4.550058784010877
[2025-11-27 23:49:05] 2025-11-28 04:48:30,644 | INFO     | current chi2=4.550058784010877 (change=41.43261511626881 %)
[2025-11-27 23:49:05] 2025-11-28 04:48:30,649 | INFO     | sum of square deviations: 420646998227.85376
[2025-11-27 23:49:05] 2025-11-28 04:48:30,746 | INFO     | sum of deviations: 4049649635284.3906
[2025-11-27 23:49:05] 2025-11-28 04:48:30,746 | INFO     | mean x: 1764270881.804878
[2025-11-27 23:49:05] 2025-11-28 04:48:30,746 | INFO     | mean y: 3115666.7055103886
[2025-11-27 23:49:05] 2025-11-28 04:48:30,746 | INFO     | intersect: -16981859771.4739
[2025-11-27 23:49:05] 2025-11-28 04:48:30,747 | INFO     | chi2: 4.109067210885735
[2025-11-27 23:49:05] 2025-11-28 04:48:30,748 | INFO     | current chi2=4.109067210885735 (change=9.691997269899169 %)
[2025-11-27 23:49:05] 2025-11-28 04:48:30,748 | INFO     | right removable region: 1106
[2025-11-27 23:49:05] 2025-11-28 04:48:30,753 | INFO     | sum of square deviations: 426370888284.47455
[2025-11-27 23:49:05] 2025-11-28 04:48:30,815 | INFO     | sum of deviations: 3114992737638.0728
[2025-11-27 23:49:05] 2025-11-28 04:48:30,816 | INFO     | mean x: 1764271339.2976618
[2025-11-27 23:49:05] 2025-11-28 04:48:30,816 | INFO     | mean y: 3113736.220323741
[2025-11-27 23:49:05] 2025-11-28 04:48:30,816 | INFO     | intersect: -12886350718.652327
[2025-11-27 23:49:05] 2025-11-28 04:48:30,832 | INFO     | chi2: 4.4999535441609355
[2025-11-27 23:49:05] 2025-11-28 04:48:30,833 | INFO     | current chi2=4.4999535441609355 (change=42.07755906233282 %)
[2025-11-27 23:49:05] 2025-11-28 04:48:30,834 | INFO     | sum of square deviations: 420644965832.2787
[2025-11-27 23:49:05] 2025-11-28 04:48:30,906 | INFO     | sum of deviations: 2943047111237.0435
[2025-11-27 23:49:05] 2025-11-28 04:48:30,906 | INFO     | mean x: 1764271491.8012648
[2025-11-27 23:49:05] 2025-11-28 04:48:30,906 | INFO     | mean y: 3118310.2547425474
[2025-11-27 23:49:05] 2025-11-28 04:48:30,906 | INFO     | intersect: -12340626508.157969
[2025-11-27 23:49:05] 2025-11-28 04:48:30,908 | INFO     | chi2: 3.986513738077925
[2025-11-27 23:49:05] 2025-11-28 04:48:30,908 | INFO     | current chi2=3.986513738077925 (change=11.409891258749582 %)
[2025-11-27 23:49:05] 2025-11-28 04:48:30,912 | INFO     | left removable region: 20
[2025-11-27 23:49:05] 2025-11-28 04:48:30,914 | INFO     | sum of square deviations: 397158909698.11566
[2025-11-27 23:49:05] 2025-11-28 04:48:30,953 | INFO     | sum of deviations: 3287837500293.2144
[2025-11-27 23:49:05] 2025-11-28 04:48:30,957 | INFO     | mean x: 1764271461.304788
[2025-11-27 23:49:05] 2025-11-28 04:48:30,957 | INFO     | mean y: 3135929.8241252303
[2025-11-27 23:49:05] 2025-11-28 04:48:30,958 | INFO     | intersect: -14602196418.33876
[2025-11-27 23:49:05] 2025-11-28 04:48:30,959 | INFO     | chi2: 0.2531606148950437
[2025-11-27 23:49:05] 2025-11-28 04:48:30,959 | INFO     | current memory leak: 8.28 B/s (using 1086 data points, chi2=0.25)
[2025-11-27 23:49:05] 2025-11-28 04:48:30,960 | INFO     | could have reported an average CPU frequency of 2832 MHz (41 samples)
[2025-11-27 23:49:05] 2025-11-28 04:48:30,960 | INFO     | ..............................
[2025-11-27 23:49:05] 2025-11-28 04:48:30,960 | INFO     | . Timing measurements:
[2025-11-27 23:49:05] 2025-11-28 04:48:30,961 | INFO     | . get job = 0 s
[2025-11-27 23:49:05] 2025-11-28 04:48:30,961 | INFO     | . initial setup = 3 s
[2025-11-27 23:49:05] 2025-11-28 04:48:30,961 | INFO     | . payload setup = 6 s
[2025-11-27 23:49:05] 2025-11-28 04:48:30,961 | INFO     | . stage-in = 0 s
[2025-11-27 23:49:05] 2025-11-28 04:48:30,961 | INFO     | . payload execution = 68129 s
[2025-11-27 23:49:05] 2025-11-28 04:48:30,961 | INFO     | . stage-out = 9 s
[2025-11-27 23:49:05] 2025-11-28 04:48:30,961 | INFO     | . log creation = 2 s
[2025-11-27 23:49:05] 2025-11-28 04:48:30,961 | INFO     | ..............................
[2025-11-27 23:49:05] 2025-11-28 04:48:31,231 | INFO     | 
[2025-11-27 23:49:05] 2025-11-28 04:48:31,231 | INFO     | job summary report
[2025-11-27 23:49:05] 2025-11-28 04:48:31,231 | INFO     | --------------------------------------------------
[2025-11-27 23:49:05] 2025-11-28 04:48:31,232 | INFO     | PanDA job id: 6898178698
[2025-11-27 23:49:05] 2025-11-28 04:48:31,232 | INFO     | task id: 47556161
[2025-11-27 23:49:05] 2025-11-28 04:48:31,232 | INFO     | errors: (none)
[2025-11-27 23:49:05] 2025-11-28 04:48:31,232 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 23:49:05] 2025-11-28 04:48:31,232 | INFO     | pilot state: finished 
[2025-11-27 23:49:05] 2025-11-28 04:48:31,232 | INFO     | transexitcode: 0
[2025-11-27 23:49:05] 2025-11-28 04:48:31,232 | INFO     | exeerrorcode: 0
[2025-11-27 23:49:05] 2025-11-28 04:48:31,232 | INFO     | exeerrordiag: 
[2025-11-27 23:49:05] 2025-11-28 04:48:31,232 | INFO     | exitcode: 0
[2025-11-27 23:49:05] 2025-11-28 04:48:31,232 | INFO     | exitmsg: OK
[2025-11-27 23:49:05] 2025-11-28 04:48:31,232 | INFO     | cpuconsumptiontime: 250935 s
[2025-11-27 23:49:05] 2025-11-28 04:48:31,232 | INFO     | nevents: 1000
[2025-11-27 23:49:05] 2025-11-28 04:48:31,232 | INFO     | neventsw: 0
[2025-11-27 23:49:05] 2025-11-28 04:48:31,233 | INFO     | pid: 1491084
[2025-11-27 23:49:05] 2025-11-28 04:48:31,233 | INFO     | pgrp: 1491084
[2025-11-27 23:49:05] 2025-11-28 04:48:31,233 | INFO     | corecount: 9
[2025-11-27 23:49:05] 2025-11-28 04:48:31,233 | INFO     | event service: False
[2025-11-27 23:49:05] 2025-11-28 04:48:31,233 | INFO     | sizes: {0: 2284258, 1: 2284258, 12: 2284286, 14: 2284576, 22: 2284604, 68139: 2343040, 68149: 2352034, 68150: 2352090, 68176: 2352432}
[2025-11-27 23:49:05] 2025-11-28 04:48:31,233 | INFO     | --------------------------------------------------
[2025-11-27 23:49:05] 2025-11-28 04:48:31,233 | INFO     | 
[2025-11-27 23:49:05] 2025-11-28 04:48:31,233 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-27 23:49:05] 2025-11-28 04:48:31,298 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 23:49:05] 2025-11-28 04:48:31,299 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 23:49:05] 2025-11-28 04:48:31,299 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 23:49:05] 2025-11-28 04:48:31,303 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 23:49:05] 2025-11-28 04:48:31,303 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 23:49:05] 2025-11-28 04:48:31,303 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 23:49:05] 2025-11-28 04:48:31,304 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 23:49:05] 2025-11-28 04:48:31,304 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 23:49:05] 2025-11-28 04:48:31,304 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 23:49:05] 2025-11-28 04:48:31,304 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 23:49:05] 2025-11-28 04:48:31,304 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 23:49:05] 2025-11-28 04:48:31,304 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 23:49:05] 2025-11-28 04:48:31,304 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 23:49:05] 2025-11-28 04:48:31,304 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 23:49:05] 2025-11-28 04:48:31,304 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 23:49:05] 2025-11-28 04:48:31,304 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 23:49:05] 2025-11-28 04:48:31,304 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 23:49:05] 2025-11-28 04:48:31,304 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 23:49:05] 2025-11-28 04:48:31,304 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 23:49:05] 2025-11-28 04:48:31,304 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 23:49:05] 2025-11-28 04:48:31,305 | INFO     | job 6898178698 has completed (purged errors)
[2025-11-27 23:49:05] 2025-11-28 04:48:31,305 | INFO     | overall cleanup function is called
[2025-11-27 23:49:05] 2025-11-28 04:48:32,349 | INFO     | --- collectZombieJob: --- 10, [1491084]
[2025-11-27 23:49:05] 2025-11-28 04:48:32,349 | INFO     | zombie collector waiting for pid 1491084
[2025-11-27 23:49:05] 2025-11-28 04:48:32,349 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 23:49:05] 2025-11-28 04:48:32,350 | INFO     | collected zombie processes
[2025-11-27 23:49:05] 2025-11-28 04:48:32,350 | INFO     | will attempt to kill all subprocesses of pid=1491084
[2025-11-27 23:49:05] 2025-11-28 04:48:32,825 | INFO     | process IDs to be killed: [1491084] (in reverse order)
[2025-11-27 23:49:05] 2025-11-28 04:48:33,045 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 23:49:05] 2025-11-28 04:48:33,045 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 23:49:05] 2025-11-28 04:48:33,062 | INFO     | did not find any defunct processes belonging to 1491084
[2025-11-27 23:49:05] 2025-11-28 04:48:33,080 | INFO     | did not find any defunct processes belonging to 1491084
[2025-11-27 23:49:05] 2025-11-28 04:48:33,087 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 23:49:05] 2025-11-28 04:48:33,087 | INFO     | ready for new job
[2025-11-27 23:49:05] 2025-11-28 04:48:33,087 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 23:49:05] 2025-11-28 04:48:33,097 | INFO     | ***************************************
[2025-11-27 23:49:05] 2025-11-28 04:48:33,098 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 23:49:05] 2025-11-28 04:48:33,098 | INFO     | ***************************************
[2025-11-27 23:49:05] 2025-11-28 04:48:33,098 | INFO     | 
[2025-11-27 23:49:05] 2025-11-28 04:48:33,105 | INFO     | architecture information:
[2025-11-27 23:49:05] 2025-11-28 04:48:33,105 | INFO     | executing command: cat /etc/os-release
[2025-11-27 23:49:05] 2025-11-28 04:48:33,159 | INFO     | cat /etc/os-release:
[2025-11-27 23:49:05] NAME="CentOS Linux"
[2025-11-27 23:49:05] VERSION="7 (Core)"
[2025-11-27 23:49:05] ID="centos"
[2025-11-27 23:49:05] ID_LIKE="rhel fedora"
[2025-11-27 23:49:05] VERSION_ID="7"
[2025-11-27 23:49:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 23:49:05] ANSI_COLOR="0;31"
[2025-11-27 23:49:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 23:49:05] HOME_URL="https://www.centos.org/"
[2025-11-27 23:49:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 23:49:05] 
[2025-11-27 23:49:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 23:49:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 23:49:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 23:49:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 23:49:05] 
[2025-11-27 23:49:05] 2025-11-28 04:48:33,160 | INFO     | ***************************************
[2025-11-27 23:49:05] 2025-11-28 04:48:33,665 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-27 23:49:05] 2025-11-28 04:48:33,716 | INFO     | sufficient remaining disk space (68016930816 B)
[2025-11-27 23:49:05] 2025-11-28 04:48:33,717 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 23:49:05] 2025-11-28 04:48:33,717 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 23:49:05] 2025-11-28 04:48:33,717 | INFO     | update_server=False
[2025-11-27 23:49:05] 2025-11-28 04:48:33,717 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 23:49:05] 2025-11-28 04:48:33,721 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 23:49:05] 2025-11-28 04:48:33,721 | INFO     | aborting loop
[2025-11-27 23:49:05] 2025-11-28 04:48:33,769 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 23:49:05] 2025-11-28 04:48:34,069 | INFO     | all job control threads have been joined
[2025-11-27 23:49:05] 2025-11-28 04:48:34,109 | INFO     | all payload control threads have been joined
[2025-11-27 23:49:05] 2025-11-28 04:48:34,167 | INFO     | all data control threads have been joined
[2025-11-27 23:49:05] 2025-11-28 04:48:34,558 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 23:49:05] 2025-11-28 04:48:34,723 | INFO     | [job] retrieve thread has finished
[2025-11-27 23:49:05] 2025-11-28 04:48:34,726 | INFO     | [job] job monitor thread has finished
[2025-11-27 23:49:05] 2025-11-28 04:48:34,984 | INFO     | [payload] failed_post thread has finished
[2025-11-27 23:49:05] 2025-11-28 04:48:35,074 | INFO     | [job] control thread has finished
[2025-11-27 23:49:05] 2025-11-28 04:48:35,117 | INFO     | [payload] control thread has finished
[2025-11-27 23:49:05] 2025-11-28 04:48:35,172 | INFO     | [data] control thread has finished
[2025-11-27 23:49:05] 2025-11-28 04:48:35,223 | INFO     | [monitor] cgroup control has ended
[2025-11-27 23:49:05] 2025-11-28 04:48:35,250 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 23:49:05] 2025-11-28 04:48:35,940 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 23:49:05] 2025-11-28 04:48:35,947 | INFO     | [data] copytool_in thread has finished
[2025-11-27 23:49:05] 2025-11-28 04:48:35,962 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 23:49:05] 2025-11-28 04:48:35,963 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 23:49:05] 2025-11-28 04:48:35,985 | INFO     | [payload] validate_post thread has finished
[2025-11-27 23:49:05] 2025-11-28 04:48:36,160 | INFO     | [job] validate thread has finished
[2025-11-27 23:49:05] 2025-11-28 04:48:36,250 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 23:49:05] 2025-11-28 04:48:36,564 | INFO     | [data] copytool_out thread has finished
[2025-11-27 23:49:05] 2025-11-28 04:48:37,256 | INFO     | [job] queue monitor thread has finished
[2025-11-27 23:49:05] 2025-11-28 04:48:37,779 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 23:49:05] 2025-11-28 04:48:38,199 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140208102250304)>', '<ExcThread(monitor, started 140207378650880)>']
[2025-11-27 23:49:05] 2025-11-28 04:48:43,225 | INFO     | all workflow threads have been joined
[2025-11-27 23:49:05] 2025-11-28 04:48:43,225 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 23:49:05] 2025-11-28 04:48:43,226 | INFO     | traces error code: 0
[2025-11-27 23:49:05] 2025-11-28 04:48:43,226 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 23:49:05] 2025-11-28 04:49:03,422 | INFO     | PID=1483047 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 23:49:05] 2025-11-28 04:49:03,423 | INFO     | .. there are 12 such processes running
[2025-11-27 23:49:05] 2025-11-28 04:49:03,423 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 23:49:05] 2025-11-28 04:49:03,423 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 23:49:05] 2025-11-28 04:49:03,423 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 23:49:05] 2025-11-28 04:49:03,423 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 23:49:05] 2025-11-28 04:49:03,423 | INFO     | [monitor] control thread has ended
[2025-11-27 23:49:05] 2025-11-28 04:49:04,438 [wrapper] ==== pilot stdout END ====
[2025-11-27 23:49:05] 2025-11-28 04:49:04,449 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 23:49:05] 2025-11-28 04:49:04,473 [wrapper] pilotpid: 1483047
[2025-11-27 23:49:05] 2025-11-28 04:49:04,495 [wrapper] Pilot exit status: 0
[2025-11-27 23:49:05] 2025-11-28 04:49:04,578 [wrapper] pandaids: 6898178698
[2025-11-27 23:49:05] 2025-11-28 04:49:04,719 [wrapper] cleanup supervisor_pilot  747979 1483048
[2025-11-27 23:49:05] 2025-11-28 04:49:04,723 [wrapper] Test setup, not cleaning
[2025-11-27 23:49:05] 2025-11-28 04:49:04,731 [wrapper] apfmon messages muted
[2025-11-27 23:49:05] 2025-11-28 04:49:04,752 [wrapper] ==== wrapper stdout END ====
[2025-11-27 23:49:05] 2025-11-28 04:49:04,782 [wrapper] ==== wrapper stderr END ====
[2025-11-27 23:49:05]  *** Error codes and diagnostics ***
[2025-11-27 23:49:05]     "exeErrorCode": 0,
[2025-11-27 23:49:05]     "exeErrorDiag": "",
[2025-11-27 23:49:05]     "pilotErrorCode": 0,
[2025-11-27 23:49:05]     "pilotErrorDiag": "",
[2025-11-27 23:49:05]  *** Listing of results directory ***
[2025-11-27 23:49:05] total 1329028
[2025-11-27 23:49:05] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 22:33 pilot3.tar.gz
[2025-11-27 23:49:05] -rwx------. 1 boincer umatlas     36292 Nov 25 23:15 runpilot2-wrapper.sh
[2025-11-27 23:49:05] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 23:15 queuedata.json
[2025-11-27 23:49:05] -rw-r--r--. 1 boincer umatlas       100 Nov 27 04:50 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 23:49:05] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 04:50 run_atlas
[2025-11-27 23:49:05] -rw-r--r--. 1 boincer umatlas       105 Nov 27 04:50 job.xml
[2025-11-27 23:49:05] -rw-r--r--. 2 boincer umatlas 410642588 Nov 27 04:50 EVNT.47483658._002478.pool.root.1
[2025-11-27 23:49:05] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 04:50 start_atlas.sh
[2025-11-27 23:49:05] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 04:50 shared
[2025-11-27 23:49:05] -rw-r--r--. 2 boincer umatlas    590105 Nov 27 04:50 input.tar.gz
[2025-11-27 23:49:05] -rw-r--r--. 1 boincer umatlas         0 Nov 27 04:50 boinc_lockfile
[2025-11-27 23:49:05] -rw-r--r--. 1 boincer umatlas      2782 Nov 27 04:50 pandaJob.out
[2025-11-27 23:49:05] -rw-------. 1 boincer umatlas        57 Nov 27 04:50 setup.sh.local
[2025-11-27 23:49:05] -rw-------. 1 boincer umatlas    991551 Nov 27 04:51 agis_schedconf.cvmfs.json
[2025-11-27 23:49:05] drwx------. 5 boincer umatlas      4096 Nov 27 04:51 pilot3
[2025-11-27 23:49:05] -rw-r--r--. 1 boincer umatlas       533 Nov 27 23:37 boinc_task_state.xml
[2025-11-27 23:49:05] -rw-r--r--. 1 boincer umatlas      6844 Nov 27 23:45 init_data.xml
[2025-11-27 23:49:05] -rw-------. 1 boincer umatlas 923184623 Nov 27 23:47 HITS.47556161._004601.pool.root.1
[2025-11-27 23:49:05] -rw-------. 1 boincer umatlas      1059 Nov 27 23:47 memory_monitor_summary.json
[2025-11-27 23:49:05] -rw-------. 1 boincer umatlas   1516240 Nov 27 23:47 agis_ddmendpoints.agis.ALL.json
[2025-11-27 23:49:05] -rw-------. 1 boincer umatlas   2387250 Nov 27 23:48 log.47556161._004601.job.log.tgz.1
[2025-11-27 23:49:05] -rw-------. 1 boincer umatlas        95 Nov 27 23:48 pilot_heartbeat.json
[2025-11-27 23:49:05] -rw-------. 1 boincer umatlas      8618 Nov 27 23:48 heartbeat.json
[2025-11-27 23:49:05] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 23:49 boinc_mmap_file
[2025-11-27 23:49:05] -rw-r--r--. 1 boincer umatlas        29 Nov 27 23:49 wrapper_checkpoint.txt
[2025-11-27 23:49:05] -rw-------. 1 boincer umatlas       823 Nov 27 23:49 pilotlog.txt
[2025-11-27 23:49:05] -rw-------. 1 boincer umatlas   9202561 Nov 27 23:49 log.47556161._004601.job.log.1
[2025-11-27 23:49:05] -rw-------. 1 boincer umatlas       353 Nov 27 23:49 output.list
[2025-11-27 23:49:05] -rw-r--r--. 1 boincer umatlas       620 Nov 27 23:49 runtime_log
[2025-11-27 23:49:05] -rw-------. 1 boincer umatlas  11612160 Nov 27 23:49 result.tar.gz
[2025-11-27 23:49:05] -rw-r--r--. 1 boincer umatlas      9353 Nov 27 23:49 runtime_log.err
[2025-11-27 23:49:05] -rw-------. 1 boincer umatlas       662 Nov 27 23:49 8WpMDmq7Li8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm6tJKDm7ORhKn.diag
[2025-11-27 23:49:05] -rw-r--r--. 1 boincer umatlas     21359 Nov 27 23:49 stderr.txt
[2025-11-27 23:49:05] HITS file was successfully produced:
[2025-11-27 23:49:05] -rw-------. 1 boincer umatlas 923184623 Nov 27 23:47 shared/HITS.pool.root.1
[2025-11-27 23:49:05]  *** Contents of shared directory: ***
[2025-11-27 23:49:05] total 1314512
[2025-11-27 23:49:05] -rw-r--r--. 2 boincer umatlas 410642588 Nov 27 04:50 ATLAS.root_0
[2025-11-27 23:49:05] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 04:50 start_atlas.sh
[2025-11-27 23:49:05] -rw-r--r--. 2 boincer umatlas    590105 Nov 27 04:50 input.tar.gz
[2025-11-27 23:49:05] -rw-------. 1 boincer umatlas 923184623 Nov 27 23:47 HITS.pool.root.1
[2025-11-27 23:49:05] -rw-------. 1 boincer umatlas  11612160 Nov 27 23:49 result.tar.gz
23:49:06 (1479269): run_atlas exited; CPU time 251728.914693
23:49:06 (1479269): called boinc_finish(0)

</stderr_txt>
]]>

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