Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:13:38 (3955676): wrapper (7.7.26015): starting
00:13:38 (3955676): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 00:13:38] Arguments: --nthreads 8
[2025-11-27 00:13:38] Threads: 8
[2025-11-27 00:13:38] Checking for CVMFS
[2025-11-27 00:13:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:13:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:13:39] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:13:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:13:40] 2.13.2.0 3557600 23853 209680 153348 3 160 38942038 40960000 42918 16776704 0 237119032 99.665 211969036 48527 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 00:13:40] CVMFS is ok
[2025-11-27 00:13:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:13:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:13:40] Further information can be found at the LHC@home message board.
[2025-11-27 00:13:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:13:40] Checking for apptainer binary...
[2025-11-27 00:13:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:13:40] Running /usr/bin/apptainer --version
[2025-11-27 00:13:41] apptainer version 1.4.4-1.el9
[2025-11-27 00:13:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:13:41] c-208-40.aglt2.org
[2025-11-27 00:13:41] apptainer works
[2025-11-27 00:13:41] Set ATHENA_PROC_NUMBER=8
[2025-11-27 00:13:41] Set ATHENA_CORE_NUMBER=8
[2025-11-27 00:13:41] Starting ATLAS job with PandaID=6898178769
[2025-11-27 00:13:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
00:20:10 (3955676): BOINC client no longer exists - exiting
00:20:10 (3955676): timer handler: client dead, exiting
00:21:34 (4056474): wrapper (7.7.26015): starting
00:21:34 (4056474): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 00:21:34] Arguments: --nthreads 8
[2025-11-27 00:21:34] Threads: 8
[2025-11-27 00:21:34] This job has been restarted, cleaning up previous attempt
[2025-11-27 00:21:34] Checking for CVMFS
[2025-11-27 00:21:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:21:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:21:34] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:21:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:21:35] 2.13.2.0 3557600 23861 215404 153349 3 180 39029553 40960001 32191 16776704 0 237371418 99.664 211986254 48517 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 00:21:35] CVMFS is ok
[2025-11-27 00:21:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:21:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:21:35] Further information can be found at the LHC@home message board.
[2025-11-27 00:21:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:21:35] Checking for apptainer binary...
[2025-11-27 00:21:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:21:35] Running /usr/bin/apptainer --version
[2025-11-27 00:21:35] apptainer version 1.4.4-1.el9
[2025-11-27 00:21:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:21:35] c-208-40.aglt2.org
[2025-11-27 00:21:35] apptainer works
[2025-11-27 00:21:35] Set ATHENA_PROC_NUMBER=8
[2025-11-27 00:21:35] Set ATHENA_CORE_NUMBER=8
[2025-11-27 00:21:35] Starting ATLAS job with PandaID=6898178769
[2025-11-27 00:21:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 20:48:29]  *** The last 200 lines of the pilot log: ***
[2025-11-27 20:48:29] 2025-11-27 13:38:24,829 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 20:48:29] 2025-11-27 13:38:26,201 | INFO     | time since job start (29799s) is within the limit (172800.0s)
[2025-11-27 20:48:29] 2025-11-27 13:38:26,662 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 20:48:29] 2025-11-27 13:38:26,666 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.9749453124996
[2025-11-27 20:48:29] 2025-11-27 13:38:26,678 | INFO     | using path: /tmp/boinchome/slots/7/PanDA_Pilot-6898178769/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 20:48:29] 2025-11-27 13:38:26,679 | INFO     | extracted standard info from prmon json
[2025-11-27 20:48:29] 2025-11-27 13:38:26,679 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 20:48:29] 2025-11-27 13:38:26,679 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 20:48:29] 2025-11-27 13:38:26,683 | INFO     | fitting pss+swap vs Time
[2025-11-27 20:48:29] 2025-11-27 13:38:26,684 | INFO     | sum of square deviations: 36038011499.008125
[2025-11-27 20:48:29] 2025-11-27 13:38:26,687 | INFO     | sum of deviations: 211272209302.9384
[2025-11-27 20:48:29] 2025-11-27 13:38:26,687 | INFO     | mean x: 1764235793.4549181
[2025-11-27 20:48:29] 2025-11-27 13:38:26,687 | INFO     | mean y: 2854622.3381147543
[2025-11-27 20:48:29] 2025-11-27 13:38:26,687 | INFO     | intersect: -10339946722.980335
[2025-11-27 20:48:29] 2025-11-27 13:38:26,687 | INFO     | chi2: 8.031120175118723
[2025-11-27 20:48:29] 2025-11-27 13:38:26,688 | INFO     | sum of square deviations: 34941798184.401474
[2025-11-27 20:48:29] 2025-11-27 13:38:26,691 | INFO     | sum of deviations: 386952600614.94415
[2025-11-27 20:48:29] 2025-11-27 13:38:26,691 | INFO     | mean x: 1764235640.9648032
[2025-11-27 20:48:29] 2025-11-27 13:38:26,691 | INFO     | mean y: 2879072.9378881985
[2025-11-27 20:48:29] 2025-11-27 13:38:26,691 | INFO     | intersect: -19534626288.582394
[2025-11-27 20:48:29] 2025-11-27 13:38:26,691 | INFO     | chi2: 4.287292387593366
[2025-11-27 20:48:29] 2025-11-27 13:38:26,691 | INFO     | current chi2=4.287292387593366 (change=46.61650810710241 %)
[2025-11-27 20:48:29] 2025-11-27 13:38:26,691 | INFO     | sum of square deviations: 33868020945.14644
[2025-11-27 20:48:29] 2025-11-27 13:38:26,694 | INFO     | sum of deviations: 501818789929.4855
[2025-11-27 20:48:29] 2025-11-27 13:38:26,694 | INFO     | mean x: 1764235488.4728034
[2025-11-27 20:48:29] 2025-11-27 13:38:26,694 | INFO     | mean y: 2895330.1527196653
[2025-11-27 20:48:29] 2025-11-27 13:38:26,694 | INFO     | intersect: -26137590392.64684
[2025-11-27 20:48:29] 2025-11-27 13:38:26,695 | INFO     | chi2: 2.1277347342857422
[2025-11-27 20:48:29] 2025-11-27 13:38:26,695 | INFO     | current chi2=2.1277347342857422 (change=50.3711307294316 %)
[2025-11-27 20:48:29] 2025-11-27 13:38:26,695 | INFO     | sum of square deviations: 32816389087.695496
[2025-11-27 20:48:29] 2025-11-27 13:38:26,698 | INFO     | sum of deviations: 491802697226.7421
[2025-11-27 20:48:29] 2025-11-27 13:38:26,698 | INFO     | mean x: 1764235335.97463
[2025-11-27 20:48:29] 2025-11-27 13:38:26,698 | INFO     | mean y: 2893877.8118393235
[2025-11-27 20:48:29] 2025-11-27 13:38:26,698 | INFO     | intersect: -26436812649.81396
[2025-11-27 20:48:29] 2025-11-27 13:38:26,698 | INFO     | chi2: 2.1259625385356054
[2025-11-27 20:48:29] 2025-11-27 13:38:26,698 | INFO     | current chi2=2.1259625385356054 (change=0.08329025801854857 %)
[2025-11-27 20:48:29] 2025-11-27 13:38:26,698 | INFO     | right removable region: 472
[2025-11-27 20:48:29] 2025-11-27 13:38:26,698 | INFO     | sum of square deviations: 34941573096.25265
[2025-11-27 20:48:29] 2025-11-27 13:38:26,701 | INFO     | sum of deviations: 96034860145.81404
[2025-11-27 20:48:29] 2025-11-27 13:38:26,702 | INFO     | mean x: 1764235945.9606626
[2025-11-27 20:48:29] 2025-11-27 13:38:26,702 | INFO     | mean y: 2870598.832298137
[2025-11-27 20:48:29] 2025-11-27 13:38:26,702 | INFO     | intersect: -4846028214.848208
[2025-11-27 20:48:29] 2025-11-27 13:38:26,702 | INFO     | chi2: 6.181679094394073
[2025-11-27 20:48:29] 2025-11-27 13:38:26,702 | INFO     | current chi2=6.181679094394073 (change=23.028432402922046 %)
[2025-11-27 20:48:29] 2025-11-27 13:38:26,702 | INFO     | left removable region: 10
[2025-11-27 20:48:29] 2025-11-27 13:38:26,702 | INFO     | sum of square deviations: 30579776531.324707
[2025-11-27 20:48:29] 2025-11-27 13:38:26,709 | INFO     | sum of deviations: 338135749749.5066
[2025-11-27 20:48:29] 2025-11-27 13:38:26,712 | INFO     | mean x: 1764235610.4805195
[2025-11-27 20:48:29] 2025-11-27 13:38:26,712 | INFO     | mean y: 2916190.3896103897
[2025-11-27 20:48:29] 2025-11-27 13:38:26,712 | INFO     | intersect: -19505111615.945915
[2025-11-27 20:48:29] 2025-11-27 13:38:26,713 | INFO     | chi2: 0.1259572327363617
[2025-11-27 20:48:29] 2025-11-27 13:38:26,713 | INFO     | current memory leak: 11.06 B/s (using 462 data points, chi2=0.13)
[2025-11-27 20:48:29] 2025-11-27 13:38:26,714 | INFO     | could have reported an average CPU frequency of 3799 MHz (20 samples)
[2025-11-27 20:48:29] 2025-11-27 13:38:26,714 | INFO     | ..............................
[2025-11-27 20:48:29] 2025-11-27 13:38:26,714 | INFO     | . Timing measurements:
[2025-11-27 20:48:29] 2025-11-27 13:38:26,714 | INFO     | . get job = 0 s
[2025-11-27 20:48:29] 2025-11-27 13:38:26,714 | INFO     | . initial setup = 0 s
[2025-11-27 20:48:29] 2025-11-27 13:38:26,714 | INFO     | . payload setup = 6 s
[2025-11-27 20:48:29] 2025-11-27 13:38:26,714 | INFO     | . stage-in = 0 s
[2025-11-27 20:48:29] 2025-11-27 13:38:26,714 | INFO     | . payload execution = 29756 s
[2025-11-27 20:48:29] 2025-11-27 13:38:26,714 | INFO     | . stage-out = 3 s
[2025-11-27 20:48:29] 2025-11-27 13:38:26,714 | INFO     | . log creation = 0 s
[2025-11-27 20:48:29] 2025-11-27 13:38:26,714 | INFO     | ..............................
[2025-11-27 20:48:29] 2025-11-27 13:38:26,767 | INFO     | 
[2025-11-27 20:48:29] 2025-11-27 13:38:26,767 | INFO     | job summary report
[2025-11-27 20:48:29] 2025-11-27 13:38:26,767 | INFO     | --------------------------------------------------
[2025-11-27 20:48:29] 2025-11-27 13:38:26,767 | INFO     | PanDA job id: 6898178769
[2025-11-27 20:48:29] 2025-11-27 13:38:26,767 | INFO     | task id: 47556161
[2025-11-27 20:48:29] 2025-11-27 13:38:26,767 | INFO     | errors: (none)
[2025-11-27 20:48:29] 2025-11-27 13:38:26,767 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 20:48:29] 2025-11-27 13:38:26,767 | INFO     | pilot state: finished 
[2025-11-27 20:48:29] 2025-11-27 13:38:26,767 | INFO     | transexitcode: 0
[2025-11-27 20:48:29] 2025-11-27 13:38:26,767 | INFO     | exeerrorcode: 0
[2025-11-27 20:48:29] 2025-11-27 13:38:26,767 | INFO     | exeerrordiag: 
[2025-11-27 20:48:29] 2025-11-27 13:38:26,767 | INFO     | exitcode: 0
[2025-11-27 20:48:29] 2025-11-27 13:38:26,767 | INFO     | exitmsg: OK
[2025-11-27 20:48:29] 2025-11-27 13:38:26,767 | INFO     | cpuconsumptiontime: 135093 s
[2025-11-27 20:48:29] 2025-11-27 13:38:26,767 | INFO     | nevents: 1000
[2025-11-27 20:48:29] 2025-11-27 13:38:26,767 | INFO     | neventsw: 0
[2025-11-27 20:48:29] 2025-11-27 13:38:26,767 | INFO     | pid: 1316
[2025-11-27 20:48:29] 2025-11-27 13:38:26,767 | INFO     | pgrp: 1316
[2025-11-27 20:48:29] 2025-11-27 13:38:26,767 | INFO     | corecount: 8
[2025-11-27 20:48:29] 2025-11-27 13:38:26,767 | INFO     | event service: False
[2025-11-27 20:48:29] 2025-11-27 13:38:26,767 | INFO     | sizes: {0: 2284031, 1: 2284286, 6: 2284548, 11: 2284576, 29767: 2323361, 29771: 2332355, 29773: 2332539, 29784: 2332785}
[2025-11-27 20:48:29] 2025-11-27 13:38:26,767 | INFO     | --------------------------------------------------
[2025-11-27 20:48:29] 2025-11-27 13:38:26,767 | INFO     | 
[2025-11-27 20:48:29] 2025-11-27 13:38:26,768 | INFO     | executing command: ls -lF /tmp/boinchome/slots/7
[2025-11-27 20:48:29] 2025-11-27 13:38:26,798 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 20:48:29] 2025-11-27 13:38:26,798 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 20:48:29] 2025-11-27 13:38:26,798 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 20:48:29] 2025-11-27 13:38:26,798 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 20:48:29] 2025-11-27 13:38:26,798 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 20:48:29] 2025-11-27 13:38:26,799 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 20:48:29] 2025-11-27 13:38:26,799 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 20:48:29] 2025-11-27 13:38:26,799 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 20:48:29] 2025-11-27 13:38:26,799 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 20:48:29] 2025-11-27 13:38:26,799 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 20:48:29] 2025-11-27 13:38:26,799 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 20:48:29] 2025-11-27 13:38:26,799 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 20:48:29] 2025-11-27 13:38:26,799 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 20:48:29] 2025-11-27 13:38:26,799 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 20:48:29] 2025-11-27 13:38:26,799 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 20:48:29] 2025-11-27 13:38:26,799 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 20:48:29] 2025-11-27 13:38:26,799 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 20:48:29] 2025-11-27 13:38:26,799 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 20:48:29] 2025-11-27 13:38:26,799 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 20:48:29] 2025-11-27 13:38:26,799 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 20:48:29] 2025-11-27 13:38:26,799 | INFO     | job 6898178769 has completed (purged errors)
[2025-11-27 20:48:29] 2025-11-27 13:38:26,799 | INFO     | overall cleanup function is called
[2025-11-27 20:48:29] 2025-11-27 13:38:27,819 | INFO     | --- collectZombieJob: --- 10, [1316]
[2025-11-27 20:48:29] 2025-11-27 13:38:27,819 | INFO     | zombie collector waiting for pid 1316
[2025-11-27 20:48:29] 2025-11-27 13:38:27,819 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 20:48:29] 2025-11-27 13:38:27,819 | INFO     | collected zombie processes
[2025-11-27 20:48:29] 2025-11-27 13:38:27,819 | INFO     | will attempt to kill all subprocesses of pid=1316
[2025-11-27 20:48:29] 2025-11-27 13:38:28,300 | INFO     | process IDs to be killed: [1316] (in reverse order)
[2025-11-27 20:48:29] 2025-11-27 13:38:28,489 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 20:48:29] 2025-11-27 13:38:28,489 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 20:48:29] 2025-11-27 13:38:28,570 | INFO     | did not find any defunct processes belonging to 1316
[2025-11-27 20:48:29] 2025-11-27 13:38:28,595 | INFO     | did not find any defunct processes belonging to 1316
[2025-11-27 20:48:29] 2025-11-27 13:38:28,596 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 20:48:29] 2025-11-27 13:38:28,596 | INFO     | ready for new job
[2025-11-27 20:48:29] 2025-11-27 13:38:28,596 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 20:48:29] 2025-11-27 13:38:28,598 | INFO     | ***************************************
[2025-11-27 20:48:29] 2025-11-27 13:38:28,598 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 20:48:29] 2025-11-27 13:38:28,598 | INFO     | ***************************************
[2025-11-27 20:48:29] 2025-11-27 13:38:28,598 | INFO     | 
[2025-11-27 20:48:29] 2025-11-27 13:38:28,603 | INFO     | architecture information:
[2025-11-27 20:48:29] 2025-11-27 13:38:28,603 | INFO     | executing command: cat /etc/os-release
[2025-11-27 20:48:29] 2025-11-27 13:38:28,647 | INFO     | cat /etc/os-release:
[2025-11-27 20:48:29] NAME="CentOS Linux"
[2025-11-27 20:48:29] VERSION="7 (Core)"
[2025-11-27 20:48:29] ID="centos"
[2025-11-27 20:48:29] ID_LIKE="rhel fedora"
[2025-11-27 20:48:29] VERSION_ID="7"
[2025-11-27 20:48:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 20:48:29] ANSI_COLOR="0;31"
[2025-11-27 20:48:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 20:48:29] HOME_URL="https://www.centos.org/"
[2025-11-27 20:48:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 20:48:29] 
[2025-11-27 20:48:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 20:48:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 20:48:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 20:48:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 20:48:29] 
[2025-11-27 20:48:29] 2025-11-27 13:38:28,648 | INFO     | ***************************************
[2025-11-27 20:48:29] 2025-11-27 13:38:29,151 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2025-11-27 20:48:29] 2025-11-27 13:38:29,192 | INFO     | sufficient remaining disk space (154818052096 B)
[2025-11-27 20:48:29] 2025-11-27 13:38:29,192 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 20:48:29] 2025-11-27 13:38:29,192 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 20:48:29] 2025-11-27 13:38:29,192 | INFO     | update_server=False
[2025-11-27 20:48:29] 2025-11-27 13:38:29,192 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 20:48:29] 2025-11-27 13:38:29,193 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 20:48:29] 2025-11-27 13:38:29,193 | INFO     | aborting loop
[2025-11-27 20:48:29] 2025-11-27 13:38:29,193 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 20:48:29] 2025-11-27 13:38:29,588 | INFO     | all data control threads have been joined
[2025-11-27 20:48:29] 2025-11-27 13:38:30,198 | INFO     | [job] retrieve thread has finished
[2025-11-27 20:48:29] 2025-11-27 13:38:30,198 | INFO     | [job] job monitor thread has finished
[2025-11-27 20:48:29] 2025-11-27 13:38:30,261 | INFO     | [payload] validate_post thread has finished
[2025-11-27 20:48:29] 2025-11-27 13:38:30,367 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 20:48:29] 2025-11-27 13:38:30,422 | INFO     | [job] validate thread has finished
[2025-11-27 20:48:29] 2025-11-27 13:38:30,438 | INFO     | all job control threads have been joined
[2025-11-27 20:48:29] 2025-11-27 13:38:30,469 | INFO     | all payload control threads have been joined
[2025-11-27 20:48:29] 2025-11-27 13:38:30,593 | INFO     | [data] control thread has finished
[2025-11-27 20:48:29] 2025-11-27 13:38:30,860 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 20:48:29] 2025-11-27 13:38:31,003 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 20:48:29] 2025-11-27 13:38:31,199 | INFO     | [data] copytool_out thread has finished
[2025-11-27 20:48:29] 2025-11-27 13:38:31,403 | INFO     | [data] copytool_in thread has finished
[2025-11-27 20:48:29] 2025-11-27 13:38:31,428 | INFO     | [payload] failed_post thread has finished
[2025-11-27 20:48:29] 2025-11-27 13:38:31,443 | INFO     | [job] control thread has finished
[2025-11-27 20:48:29] 2025-11-27 13:38:31,475 | INFO     | [payload] control thread has finished
[2025-11-27 20:48:29] 2025-11-27 13:38:31,671 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 20:48:29] 2025-11-27 13:38:31,784 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 20:48:29] 2025-11-27 13:38:32,789 | INFO     | [job] queue monitor thread has finished
[2025-11-27 20:48:29] 2025-11-27 13:38:35,015 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 20:48:29] 2025-11-27 13:38:39,187 | INFO     | [monitor] cgroup control has ended
[2025-11-27 20:48:29] 2025-11-27 13:38:39,334 | INFO     | job.realtimelogging is not enabled
[2025-11-27 20:48:29] 2025-11-27 13:38:40,339 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 20:48:29] 2025-11-27 13:38:40,550 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139894763816768)>', '<ExcThread(monitor, started 139894416447232)>']
[2025-11-27 20:48:29] 2025-11-27 13:38:45,563 | INFO     | all workflow threads have been joined
[2025-11-27 20:48:29] 2025-11-27 13:38:45,563 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 20:48:29] 2025-11-27 13:38:45,563 | INFO     | traces error code: 0
[2025-11-27 20:48:29] 2025-11-27 13:38:45,563 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 20:48:29] 2025-11-27 13:39:00,044 | INFO     | PID=4108476 has CPU usage=5.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 20:48:29] 2025-11-27 13:39:00,044 | INFO     | .. there are 50 such processes running
[2025-11-27 20:48:29] 2025-11-27 13:39:00,045 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 20:48:29] 2025-11-27 13:39:00,045 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 20:48:29] 2025-11-27 13:39:00,045 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 20:48:29] 2025-11-27 13:39:00,045 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 20:48:29] 2025-11-27 13:39:00,045 | INFO     | [monitor] control thread has ended
[2025-11-27 20:48:29] 2025-11-27 13:39:00,203 [wrapper] ==== pilot stdout END ====
[2025-11-27 20:48:29] 2025-11-27 13:39:00,232 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 20:48:29] 2025-11-27 13:39:00,245 [wrapper] pilotpid: 4108476
[2025-11-27 20:48:29] 2025-11-27 13:39:00,274 [wrapper] Pilot exit status: 0
[2025-11-27 20:48:29] 2025-11-27 13:39:00,376 [wrapper] pandaids: 6898178769 6898178769
[2025-11-27 20:48:29] 2025-11-27 13:39:00,521 [wrapper] cleanup supervisor_pilot 2993807 4108481
[2025-11-27 20:48:29] 2025-11-27 13:39:00,580 [wrapper] Test setup, not cleaning
[2025-11-27 20:48:29] 2025-11-27 13:39:00,590 [wrapper] apfmon messages muted
[2025-11-27 20:48:29] 2025-11-27 13:39:00,592 [wrapper] ==== wrapper stdout END ====
[2025-11-27 20:48:29] 2025-11-27 13:39:00,594 [wrapper] ==== wrapper stderr END ====
[2025-11-27 20:48:29]  *** Error codes and diagnostics ***
[2025-11-27 20:48:29]     "exeErrorCode": 0,
[2025-11-27 20:48:29]     "exeErrorDiag": "",
[2025-11-27 20:48:29]     "pilotErrorCode": 0,
[2025-11-27 20:48:29]     "pilotErrorDiag": "",
[2025-11-27 20:48:29]  *** Listing of results directory ***
[2025-11-27 20:48:29] total 1715440
[2025-11-27 20:48:29] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-27 20:48:29] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 22:33 pilot3.tar.gz
[2025-11-27 20:48:29] -rwx------. 1 boincer umatlas     36292 Nov 25 23:15 runpilot2-wrapper.sh
[2025-11-27 20:48:29] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 23:15 queuedata.json
[2025-11-27 20:48:29] -rw-r--r--. 1 boincer umatlas       100 Nov 27 00:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 20:48:29] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 00:13 run_atlas
[2025-11-27 20:48:29] -rw-r--r--. 1 boincer umatlas       105 Nov 27 00:13 job.xml
[2025-11-27 20:48:29] -rw-r--r--. 3 boincer umatlas 408293916 Nov 27 00:13 EVNT.47483658._002480.pool.root.1
[2025-11-27 20:48:29] -rw-r--r--. 3 boincer umatlas 408293916 Nov 27 00:13 ATLAS.root_0
[2025-11-27 20:48:29] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:13 start_atlas.sh
[2025-11-27 20:48:29] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 00:13 shared
[2025-11-27 20:48:29] -rw-r--r--. 2 boincer umatlas    590104 Nov 27 00:13 input.tar.gz
[2025-11-27 20:48:29] -rw-r--r--. 1 boincer umatlas         0 Nov 27 00:13 boinc_lockfile
[2025-11-27 20:48:29] -rw-r--r--. 1 boincer umatlas      2782 Nov 27 00:21 pandaJob.out
[2025-11-27 20:48:29] -rw-------. 1 boincer umatlas        57 Nov 27 00:21 setup.sh.local
[2025-11-27 20:48:29] -rw-------. 1 boincer umatlas    991578 Nov 27 00:21 agis_schedconf.cvmfs.json
[2025-11-27 20:48:29] -rw-r--r--. 1 boincer umatlas       530 Nov 27 08:27 boinc_task_state.xml
[2025-11-27 20:48:29] -rw-------. 1 boincer umatlas 925035494 Nov 27 08:37 HITS.47556161._004621.pool.root.1
[2025-11-27 20:48:29] -rw-------. 1 boincer umatlas      1065 Nov 27 08:38 memory_monitor_summary.json
[2025-11-27 20:48:29] -rw-------. 1 boincer umatlas   1516240 Nov 27 08:38 agis_ddmendpoints.agis.ALL.json
[2025-11-27 20:48:29] -rw-------. 1 boincer umatlas   1745805 Nov 27 08:38 log.47556161._004621.job.log.tgz.1
[2025-11-27 20:48:29] -rw-------. 1 boincer umatlas      8624 Nov 27 08:38 heartbeat.json
[2025-11-27 20:48:29] -rw-------. 1 boincer umatlas        95 Nov 27 08:39 pilot_heartbeat.json
[2025-11-27 20:48:29] -rw-------. 1 boincer umatlas       823 Nov 27 08:39 pilotlog.txt
[2025-11-27 20:48:29] -rw-------. 1 boincer umatlas   3783776 Nov 27 08:39 log.47556161._004621.job.log.1
[2025-11-27 20:48:29] -rw-------. 1 boincer umatlas       353 Nov 27 08:39 output.list
[2025-11-27 20:48:29] -rw-r--r--. 1 boincer umatlas       620 Nov 27 08:39 runtime_log
[2025-11-27 20:48:29] -rw-------. 1 boincer umatlas   5550080 Nov 27 08:39 result.tar.gz
[2025-11-27 20:48:29] -rw-------. 1 boincer umatlas       790 Nov 27 08:39 zY7MDmq7Li8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmGuJKDmpKyFJo.diag
[2025-11-27 20:48:29] -rw-r--r--. 1 boincer umatlas      9428 Nov 27 08:39 runtime_log.err
[2025-11-27 20:48:29] -rw-r--r--. 1 boincer umatlas      7174 Nov 27 20:47 init_data.xml
[2025-11-27 20:48:29] -rw-r--r--. 1 boincer umatlas        27 Nov 27 20:48 wrapper_checkpoint.txt
[2025-11-27 20:48:29] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 20:48 boinc_mmap_file
[2025-11-27 20:48:29] -rw-r--r--. 1 boincer umatlas     23585 Nov 27 20:48 stderr.txt
[2025-11-27 20:48:29] HITS file was successfully produced:
[2025-11-27 20:48:29] -rw-------. 1 boincer umatlas 925035494 Nov 27 08:37 shared/HITS.pool.root.1
[2025-11-27 20:48:29]  *** Contents of shared directory: ***
[2025-11-27 20:48:29] total 1308108
[2025-11-27 20:48:29] -rw-r--r--. 3 boincer umatlas 408293916 Nov 27 00:13 ATLAS.root_0
[2025-11-27 20:48:29] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:13 start_atlas.sh
[2025-11-27 20:48:29] -rw-r--r--. 2 boincer umatlas    590104 Nov 27 00:13 input.tar.gz
[2025-11-27 20:48:29] -rw-------. 1 boincer umatlas 925035494 Nov 27 08:37 HITS.pool.root.1
[2025-11-27 20:48:29] -rw-------. 1 boincer umatlas   5550080 Nov 27 08:39 result.tar.gz
20:48:30 (4056474): run_atlas exited; CPU time 135577.755944
20:48:30 (4056474): called boinc_finish(0)

</stderr_txt>
]]>

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