Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:12:55 (3946571): wrapper (7.7.26015): starting
00:12:55 (3946571): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 00:12:55] Arguments: --nthreads 8
[2025-11-27 00:12:55] Threads: 8
[2025-11-27 00:12:55] Checking for CVMFS
[2025-11-27 00:12:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:12:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:12:56] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:12:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:12:57] 2.13.2.0 3557600 23852 233796 153347 0 827 38936259 40960000 42864 16776704 0 237098936 99.665 211966756 48527 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 00:12:57] CVMFS is ok
[2025-11-27 00:12:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:12:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:12:57] Further information can be found at the LHC@home message board.
[2025-11-27 00:12:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:12:57] Checking for apptainer binary...
[2025-11-27 00:12:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:12:57] Running /usr/bin/apptainer --version
[2025-11-27 00:12:57] apptainer version 1.4.4-1.el9
[2025-11-27 00:12:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:12:57] c-208-40.aglt2.org
[2025-11-27 00:12:57] apptainer works
[2025-11-27 00:12:57] Set ATHENA_PROC_NUMBER=8
[2025-11-27 00:12:57] Set ATHENA_CORE_NUMBER=8
[2025-11-27 00:12:57] Starting ATLAS job with PandaID=6897663391
[2025-11-27 00:12:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
00:20:05 (3946571): BOINC client no longer exists - exiting
00:20:05 (3946571): timer handler: client dead, exiting
00:21:34 (4056469): wrapper (7.7.26015): starting
00:21:34 (4056469): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 00:21:34] Arguments: --nthreads 8
[2025-11-27 00:21:34] Threads: 8
[2025-11-27 00:21:34] This job has been restarted, cleaning up previous attempt
[2025-11-27 00:21:34] Checking for CVMFS
[2025-11-27 00:21:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:21:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:21:34] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:21:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:21:35] 2.13.2.0 3557600 23861 215404 153349 3 180 39029553 40960001 32191 16776704 0 237371418 99.664 211986254 48517 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 00:21:35] CVMFS is ok
[2025-11-27 00:21:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:21:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:21:35] Further information can be found at the LHC@home message board.
[2025-11-27 00:21:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:21:35] Checking for apptainer binary...
[2025-11-27 00:21:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:21:35] Running /usr/bin/apptainer --version
[2025-11-27 00:21:35] apptainer version 1.4.4-1.el9
[2025-11-27 00:21:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:21:35] c-208-40.aglt2.org
[2025-11-27 00:21:35] apptainer works
[2025-11-27 00:21:35] Set ATHENA_PROC_NUMBER=8
[2025-11-27 00:21:35] Set ATHENA_CORE_NUMBER=8
[2025-11-27 00:21:35] Starting ATLAS job with PandaID=6897663391
[2025-11-27 00:21:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 20:51:00]  *** The last 200 lines of the pilot log: ***
[2025-11-27 20:51:00] 2025-11-28 01:50:00,706 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 20:51:00] 2025-11-28 01:50:00,767 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 20:51:00] 2025-11-28 01:50:00,772 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3788.298414062499
[2025-11-27 20:51:00] 2025-11-28 01:50:00,787 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6897663391/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 20:51:00] 2025-11-28 01:50:00,787 | INFO     | extracted standard info from prmon json
[2025-11-27 20:51:00] 2025-11-28 01:50:00,788 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 20:51:00] 2025-11-28 01:50:00,788 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 20:51:00] 2025-11-28 01:50:00,799 | INFO     | fitting pss+swap vs Time
[2025-11-27 20:51:00] 2025-11-28 01:50:00,800 | INFO     | sum of square deviations: 546532839335.85406
[2025-11-27 20:51:00] 2025-11-28 01:50:00,817 | INFO     | sum of deviations: 3468735010922.339
[2025-11-27 20:51:00] 2025-11-28 01:50:00,817 | INFO     | mean x: 1764257754.3708608
[2025-11-27 20:51:00] 2025-11-28 01:50:00,818 | INFO     | mean y: 2905490.742549669
[2025-11-27 20:51:00] 2025-11-28 01:50:00,818 | INFO     | intersect: -11194486871.469631
[2025-11-27 20:51:00] 2025-11-28 01:50:00,818 | INFO     | chi2: 4.717218101072721
[2025-11-27 20:51:00] 2025-11-28 01:50:00,819 | INFO     | sum of square deviations: 539774183278.281
[2025-11-27 20:51:00] 2025-11-28 01:50:00,835 | INFO     | sum of deviations: 3803805643041.939
[2025-11-27 20:51:00] 2025-11-28 01:50:00,836 | INFO     | mean x: 1764257601.8786368
[2025-11-27 20:51:00] 2025-11-28 01:50:00,836 | INFO     | mean y: 2913044.8694929346
[2025-11-27 20:51:00] 2025-11-28 01:50:00,836 | INFO     | intersect: -12429865753.56702
[2025-11-27 20:51:00] 2025-11-28 01:50:00,836 | INFO     | chi2: 2.3022303937609685
[2025-11-27 20:51:00] 2025-11-28 01:50:00,836 | INFO     | current chi2=2.3022303937609685 (change=51.19516748149871 %)
[2025-11-27 20:51:00] 2025-11-28 01:50:00,837 | INFO     | sum of square deviations: 533071335119.6037
[2025-11-27 20:51:00] 2025-11-28 01:50:00,853 | INFO     | sum of deviations: 3794039794117.1655
[2025-11-27 20:51:00] 2025-11-28 01:50:00,853 | INFO     | mean x: 1764257449.384808
[2025-11-27 20:51:00] 2025-11-28 01:50:00,853 | INFO     | mean y: 2912820.262103506
[2025-11-27 20:51:00] 2025-11-28 01:50:00,853 | INFO     | intersect: -12553873727.886793
[2025-11-27 20:51:00] 2025-11-28 01:50:00,854 | INFO     | chi2: 2.2345411608336536
[2025-11-27 20:51:00] 2025-11-28 01:50:00,854 | INFO     | current chi2=2.2345411608336536 (change=2.940158948068461 %)
[2025-11-27 20:51:00] 2025-11-28 01:50:00,854 | INFO     | right removable region: 1197
[2025-11-27 20:51:00] 2025-11-28 01:50:00,855 | INFO     | sum of square deviations: 539772878247.03766
[2025-11-27 20:51:00] 2025-11-28 01:50:00,870 | INFO     | sum of deviations: 3175337296543.333
[2025-11-27 20:51:00] 2025-11-28 01:50:00,871 | INFO     | mean x: 1764257906.8778055
[2025-11-27 20:51:00] 2025-11-28 01:50:00,871 | INFO     | mean y: 2912101.383208645
[2025-11-27 20:51:00] 2025-11-28 01:50:00,871 | INFO     | intersect: -10375738175.792542
[2025-11-27 20:51:00] 2025-11-28 01:50:00,871 | INFO     | chi2: 2.8718120961279605
[2025-11-27 20:51:00] 2025-11-28 01:50:00,871 | INFO     | current chi2=2.8718120961279605 (change=39.12064198441673 %)
[2025-11-27 20:51:00] 2025-11-28 01:50:00,872 | INFO     | sum of square deviations: 533069971819.9599
[2025-11-27 20:51:00] 2025-11-28 01:50:00,887 | INFO     | sum of deviations: 3076237699564.7456
[2025-11-27 20:51:00] 2025-11-28 01:50:00,888 | INFO     | mean x: 1764258059.372287
[2025-11-27 20:51:00] 2025-11-28 01:50:00,888 | INFO     | mean y: 2914355.4983305507
[2025-11-27 20:51:00] 2025-11-28 01:50:00,888 | INFO     | intersect: -10178257799.95556
[2025-11-27 20:51:00] 2025-11-28 01:50:00,888 | INFO     | chi2: 2.803022587227956
[2025-11-27 20:51:00] 2025-11-28 01:50:00,889 | INFO     | current chi2=2.803022587227956 (change=2.395334603985855 %)
[2025-11-27 20:51:00] 2025-11-28 01:50:00,889 | INFO     | left removable region: 20
[2025-11-27 20:51:00] 2025-11-28 01:50:00,889 | INFO     | sum of square deviations: 505524108179.6278
[2025-11-27 20:51:00] 2025-11-28 01:50:00,904 | INFO     | sum of deviations: 3243567794231.5566
[2025-11-27 20:51:00] 2025-11-28 01:50:00,904 | INFO     | mean x: 1764258028.8717077
[2025-11-27 20:51:00] 2025-11-28 01:50:00,905 | INFO     | mean y: 2925145.6924384027
[2025-11-27 20:51:00] 2025-11-28 01:50:00,905 | INFO     | intersect: -11316991017.691301
[2025-11-27 20:51:00] 2025-11-28 01:50:00,905 | INFO     | chi2: 0.26819646399445624
[2025-11-27 20:51:00] 2025-11-28 01:50:00,905 | INFO     | current memory leak: 6.42 B/s (using 1177 data points, chi2=0.27)
[2025-11-27 20:51:00] 2025-11-28 01:50:00,907 | INFO     | could have reported an average CPU frequency of 3797 MHz (44 samples)
[2025-11-27 20:51:00] 2025-11-28 01:50:00,907 | INFO     | ..............................
[2025-11-27 20:51:00] 2025-11-28 01:50:00,907 | INFO     | . Timing measurements:
[2025-11-27 20:51:00] 2025-11-28 01:50:00,907 | INFO     | . get job = 0 s
[2025-11-27 20:51:00] 2025-11-28 01:50:00,907 | INFO     | . initial setup = 0 s
[2025-11-27 20:51:00] 2025-11-28 01:50:00,907 | INFO     | . payload setup = 6 s
[2025-11-27 20:51:00] 2025-11-28 01:50:00,907 | INFO     | . stage-in = 0 s
[2025-11-27 20:51:00] 2025-11-28 01:50:00,907 | INFO     | . payload execution = 73653 s
[2025-11-27 20:51:00] 2025-11-28 01:50:00,907 | INFO     | . stage-out = 3 s
[2025-11-27 20:51:00] 2025-11-28 01:50:00,907 | INFO     | . log creation = 0 s
[2025-11-27 20:51:00] 2025-11-28 01:50:00,907 | INFO     | ..............................
[2025-11-27 20:51:00] 2025-11-28 01:50:00,966 | INFO     | 
[2025-11-27 20:51:00] 2025-11-28 01:50:00,966 | INFO     | job summary report
[2025-11-27 20:51:00] 2025-11-28 01:50:00,967 | INFO     | --------------------------------------------------
[2025-11-27 20:51:00] 2025-11-28 01:50:00,967 | INFO     | PanDA job id: 6897663391
[2025-11-27 20:51:00] 2025-11-28 01:50:00,967 | INFO     | task id: 47556161
[2025-11-27 20:51:00] 2025-11-28 01:50:00,967 | INFO     | errors: (none)
[2025-11-27 20:51:00] 2025-11-28 01:50:00,967 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 20:51:00] 2025-11-28 01:50:00,967 | INFO     | pilot state: finished 
[2025-11-27 20:51:00] 2025-11-28 01:50:00,967 | INFO     | transexitcode: 0
[2025-11-27 20:51:00] 2025-11-28 01:50:00,967 | INFO     | exeerrorcode: 0
[2025-11-27 20:51:00] 2025-11-28 01:50:00,967 | INFO     | exeerrordiag: 
[2025-11-27 20:51:00] 2025-11-28 01:50:00,967 | INFO     | exitcode: 0
[2025-11-27 20:51:00] 2025-11-28 01:50:00,967 | INFO     | exitmsg: OK
[2025-11-27 20:51:00] 2025-11-28 01:50:00,967 | INFO     | cpuconsumptiontime: 144324 s
[2025-11-27 20:51:00] 2025-11-28 01:50:00,967 | INFO     | nevents: 1000
[2025-11-27 20:51:00] 2025-11-28 01:50:00,967 | INFO     | neventsw: 0
[2025-11-27 20:51:00] 2025-11-28 01:50:00,967 | INFO     | pid: 1305
[2025-11-27 20:51:00] 2025-11-28 01:50:00,967 | INFO     | pgrp: 1305
[2025-11-27 20:51:00] 2025-11-28 01:50:00,967 | INFO     | corecount: 8
[2025-11-27 20:51:00] 2025-11-28 01:50:00,967 | INFO     | event service: False
[2025-11-27 20:51:00] 2025-11-28 01:50:00,967 | INFO     | sizes: {0: 2284088, 1: 2284287, 6: 2284549, 11: 2284577, 73664: 2344306, 73668: 2353300, 73670: 2353484, 73678: 2353730}
[2025-11-27 20:51:00] 2025-11-28 01:50:00,968 | INFO     | --------------------------------------------------
[2025-11-27 20:51:00] 2025-11-28 01:50:00,968 | INFO     | 
[2025-11-27 20:51:00] 2025-11-28 01:50:00,968 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-27 20:51:00] 2025-11-28 01:50:00,987 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 20:51:00] 2025-11-28 01:50:00,988 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 20:51:00] 2025-11-28 01:50:00,988 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 20:51:00] 2025-11-28 01:50:00,988 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 20:51:00] 2025-11-28 01:50:00,988 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 20:51:00] 2025-11-28 01:50:00,988 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 20:51:00] 2025-11-28 01:50:00,988 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 20:51:00] 2025-11-28 01:50:00,988 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 20:51:00] 2025-11-28 01:50:00,988 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 20:51:00] 2025-11-28 01:50:00,988 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 20:51:00] 2025-11-28 01:50:00,988 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 20:51:00] 2025-11-28 01:50:00,988 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 20:51:00] 2025-11-28 01:50:00,988 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 20:51:00] 2025-11-28 01:50:00,988 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 20:51:00] 2025-11-28 01:50:00,988 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 20:51:00] 2025-11-28 01:50:00,988 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 20:51:00] 2025-11-28 01:50:00,989 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 20:51:00] 2025-11-28 01:50:00,989 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 20:51:00] 2025-11-28 01:50:00,989 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 20:51:00] 2025-11-28 01:50:00,989 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 20:51:00] 2025-11-28 01:50:00,989 | INFO     | job 6897663391 has completed (purged errors)
[2025-11-27 20:51:00] 2025-11-28 01:50:00,989 | INFO     | overall cleanup function is called
[2025-11-27 20:51:00] 2025-11-28 01:50:02,003 | INFO     | --- collectZombieJob: --- 10, [1305]
[2025-11-27 20:51:00] 2025-11-28 01:50:02,003 | INFO     | zombie collector waiting for pid 1305
[2025-11-27 20:51:00] 2025-11-28 01:50:02,003 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 20:51:00] 2025-11-28 01:50:02,004 | INFO     | collected zombie processes
[2025-11-27 20:51:00] 2025-11-28 01:50:02,004 | INFO     | will attempt to kill all subprocesses of pid=1305
[2025-11-27 20:51:00] 2025-11-28 01:50:02,397 | INFO     | process IDs to be killed: [1305] (in reverse order)
[2025-11-27 20:51:00] 2025-11-28 01:50:02,547 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 20:51:00] 2025-11-28 01:50:02,547 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 20:51:00] 2025-11-28 01:50:02,571 | INFO     | did not find any defunct processes belonging to 1305
[2025-11-27 20:51:00] 2025-11-28 01:50:02,594 | INFO     | did not find any defunct processes belonging to 1305
[2025-11-27 20:51:00] 2025-11-28 01:50:02,595 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 20:51:00] 2025-11-28 01:50:02,595 | INFO     | ready for new job
[2025-11-27 20:51:00] 2025-11-28 01:50:02,595 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 20:51:00] 2025-11-28 01:50:02,599 | INFO     | ***************************************
[2025-11-27 20:51:00] 2025-11-28 01:50:02,599 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 20:51:00] 2025-11-28 01:50:02,599 | INFO     | ***************************************
[2025-11-27 20:51:00] 2025-11-28 01:50:02,599 | INFO     | 
[2025-11-27 20:51:00] 2025-11-28 01:50:02,604 | INFO     | architecture information:
[2025-11-27 20:51:00] 2025-11-28 01:50:02,604 | INFO     | executing command: cat /etc/os-release
[2025-11-27 20:51:00] 2025-11-28 01:50:02,620 | INFO     | cat /etc/os-release:
[2025-11-27 20:51:00] NAME="CentOS Linux"
[2025-11-27 20:51:00] VERSION="7 (Core)"
[2025-11-27 20:51:00] ID="centos"
[2025-11-27 20:51:00] ID_LIKE="rhel fedora"
[2025-11-27 20:51:00] VERSION_ID="7"
[2025-11-27 20:51:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 20:51:00] ANSI_COLOR="0;31"
[2025-11-27 20:51:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 20:51:00] HOME_URL="https://www.centos.org/"
[2025-11-27 20:51:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 20:51:00] 
[2025-11-27 20:51:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 20:51:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 20:51:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 20:51:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 20:51:00] 
[2025-11-27 20:51:00] 2025-11-28 01:50:02,621 | INFO     | ***************************************
[2025-11-27 20:51:00] 2025-11-28 01:50:03,124 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-27 20:51:00] 2025-11-28 01:50:03,144 | INFO     | sufficient remaining disk space (156692905984 B)
[2025-11-27 20:51:00] 2025-11-28 01:50:03,146 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 20:51:00] 2025-11-28 01:50:03,146 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 20:51:00] 2025-11-28 01:50:03,146 | INFO     | update_server=False
[2025-11-27 20:51:00] 2025-11-28 01:50:03,146 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 20:51:00] 2025-11-28 01:50:03,210 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 20:51:00] 2025-11-28 01:50:03,210 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 20:51:00] 2025-11-28 01:50:03,211 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 20:51:00] 2025-11-28 01:50:03,211 | INFO     | will abort loop
[2025-11-27 20:51:00] 2025-11-28 01:50:03,345 | INFO     | all data control threads have been joined
[2025-11-27 20:51:00] 2025-11-28 01:50:03,446 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 20:51:00] 2025-11-28 01:50:03,888 | INFO     | all job control threads have been joined
[2025-11-27 20:51:00] 2025-11-28 01:50:03,969 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 20:51:00] 2025-11-28 01:50:04,151 | INFO     | [job] retrieve thread has finished
[2025-11-27 20:51:00] 2025-11-28 01:50:04,166 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 20:51:00] 2025-11-28 01:50:04,216 | INFO     | [job] job monitor thread has finished
[2025-11-27 20:51:00] 2025-11-28 01:50:04,350 | INFO     | [data] control thread has finished
[2025-11-27 20:51:00] 2025-11-28 01:50:04,358 | INFO     | [job] validate thread has finished
[2025-11-27 20:51:00] 2025-11-28 01:50:04,452 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 20:51:00] 2025-11-28 01:50:04,590 | INFO     | all payload control threads have been joined
[2025-11-27 20:51:00] 2025-11-28 01:50:04,893 | INFO     | [job] control thread has finished
[2025-11-27 20:51:00] 2025-11-28 01:50:05,019 | INFO     | [payload] failed_post thread has finished
[2025-11-27 20:51:00] 2025-11-28 01:50:05,149 | INFO     | [payload] validate_post thread has finished
[2025-11-27 20:51:00] 2025-11-28 01:50:05,390 | INFO     | [data] copytool_in thread has finished
[2025-11-27 20:51:00] 2025-11-28 01:50:05,392 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 20:51:00] 2025-11-28 01:50:05,485 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 20:51:00] 2025-11-28 01:50:05,595 | INFO     | [payload] control thread has finished
[2025-11-27 20:51:00] 2025-11-28 01:50:05,974 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 20:51:00] 2025-11-28 01:50:05,975 | INFO     | [data] copytool_out thread has finished
[2025-11-27 20:51:00] 2025-11-28 01:50:06,979 | INFO     | [job] queue monitor thread has finished
[2025-11-27 20:51:00] 2025-11-28 01:50:07,452 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 20:51:00] 2025-11-28 01:50:33,534 | INFO     | PID=4108444 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 20:51:00] 2025-11-28 01:50:33,534 | INFO     | .. there are 40 such processes running
[2025-11-27 20:51:00] 2025-11-28 01:50:33,535 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 20:51:00] 2025-11-28 01:50:33,535 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 20:51:00] 2025-11-28 01:50:33,535 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 20:51:00] 2025-11-28 01:50:54,367 | INFO     | [monitor] cgroup control has ended
[2025-11-27 20:51:00] 2025-11-28 01:50:54,969 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140485368022848)>', '<ExcThread(monitor, started 140484756371200)>']
[2025-11-27 20:51:00] 2025-11-28 01:50:55,646 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 20:51:00] 2025-11-28 01:50:55,646 | INFO     | [monitor] control thread has ended
[2025-11-27 20:51:00] 2025-11-28 01:50:59,995 | INFO     | all workflow threads have been joined
[2025-11-27 20:51:00] 2025-11-28 01:50:59,995 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 20:51:00] 2025-11-28 01:50:59,995 | INFO     | traces error code: 0
[2025-11-27 20:51:00] 2025-11-28 01:50:59,995 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 20:51:00] 2025-11-28 01:51:00,204 [wrapper] ==== pilot stdout END ====
[2025-11-27 20:51:00] 2025-11-28 01:51:00,207 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 20:51:00] 2025-11-28 01:51:00,211 [wrapper] pilotpid: 4108444
[2025-11-27 20:51:00] 2025-11-28 01:51:00,214 [wrapper] Pilot exit status: 0
[2025-11-27 20:51:00] 2025-11-28 01:51:00,231 [wrapper] pandaids: 6897663391 6897663391
[2025-11-27 20:51:00] 2025-11-28 01:51:00,342 [wrapper] cleanup supervisor_pilot 2493789 4108448
[2025-11-27 20:51:00] 2025-11-28 01:51:00,345 [wrapper] Test setup, not cleaning
[2025-11-27 20:51:00] 2025-11-28 01:51:00,352 [wrapper] apfmon messages muted
[2025-11-27 20:51:00] 2025-11-28 01:51:00,354 [wrapper] ==== wrapper stdout END ====
[2025-11-27 20:51:00] 2025-11-28 01:51:00,360 [wrapper] ==== wrapper stderr END ====
[2025-11-27 20:51:00]  *** Error codes and diagnostics ***
[2025-11-27 20:51:00]     "exeErrorCode": 0,
[2025-11-27 20:51:00]     "exeErrorDiag": "",
[2025-11-27 20:51:00]     "pilotErrorCode": 0,
[2025-11-27 20:51:00]     "pilotErrorDiag": "",
[2025-11-27 20:51:00]  *** Listing of results directory ***
[2025-11-27 20:51:00] total 1731844
[2025-11-27 20:51:00] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-27 20:51:00] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-27 20:51:00] -rwx------. 1 boincer umatlas     36292 Nov 25 12:01 runpilot2-wrapper.sh
[2025-11-27 20:51:00] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 12:02 queuedata.json
[2025-11-27 20:51:00] -rw-r--r--. 1 boincer umatlas       100 Nov 27 00:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 20:51:00] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 00:12 run_atlas
[2025-11-27 20:51:00] -rw-r--r--. 1 boincer umatlas       105 Nov 27 00:12 job.xml
[2025-11-27 20:51:00] -rw-r--r--. 3 boincer umatlas 411152399 Nov 27 00:12 EVNT.47483658._002317.pool.root.1
[2025-11-27 20:51:00] -rw-r--r--. 3 boincer umatlas 411152399 Nov 27 00:12 ATLAS.root_0
[2025-11-27 20:51:00] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:12 start_atlas.sh
[2025-11-27 20:51:00] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 00:12 shared
[2025-11-27 20:51:00] -rw-r--r--. 2 boincer umatlas    590108 Nov 27 00:12 input.tar.gz
[2025-11-27 20:51:00] -rw-r--r--. 1 boincer umatlas         0 Nov 27 00:12 boinc_lockfile
[2025-11-27 20:51:00] -rw-r--r--. 1 boincer umatlas      2783 Nov 27 00:21 pandaJob.out
[2025-11-27 20:51:00] -rw-------. 1 boincer umatlas        57 Nov 27 00:21 setup.sh.local
[2025-11-27 20:51:00] -rw-------. 1 boincer umatlas    991578 Nov 27 00:21 agis_schedconf.cvmfs.json
[2025-11-27 20:51:00] -rw-r--r--. 1 boincer umatlas       530 Nov 27 20:43 boinc_task_state.xml
[2025-11-27 20:51:00] -rw-r--r--. 1 boincer umatlas      7174 Nov 27 20:47 init_data.xml
[2025-11-27 20:51:00] -rw-------. 1 boincer umatlas 923434075 Nov 27 20:49 HITS.47556161._003001.pool.root.1
[2025-11-27 20:51:00] -rw-------. 1 boincer umatlas      1079 Nov 27 20:49 memory_monitor_summary.json
[2025-11-27 20:51:00] -rw-------. 1 boincer umatlas   1516240 Nov 27 20:49 agis_ddmendpoints.agis.ALL.json
[2025-11-27 20:51:00] -rw-------. 1 boincer umatlas   2301143 Nov 27 20:49 log.47556161._003001.job.log.tgz.1
[2025-11-27 20:51:00] -rw-------. 1 boincer umatlas        95 Nov 27 20:49 pilot_heartbeat.json
[2025-11-27 20:51:00] -rw-------. 1 boincer umatlas      8631 Nov 27 20:50 heartbeat.json
[2025-11-27 20:51:00] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 20:50 boinc_mmap_file
[2025-11-27 20:51:00] -rw-r--r--. 1 boincer umatlas        27 Nov 27 20:50 wrapper_checkpoint.txt
[2025-11-27 20:51:00] -rw-------. 1 boincer umatlas      5011 Nov 27 20:50 pilotlog.txt
[2025-11-27 20:51:00] -rw-------. 1 boincer umatlas   9565208 Nov 27 20:51 log.47556161._003001.job.log.1
[2025-11-27 20:51:00] -rw-------. 1 boincer umatlas       353 Nov 27 20:51 output.list
[2025-11-27 20:51:00] -rw-r--r--. 1 boincer umatlas       620 Nov 27 20:51 runtime_log
[2025-11-27 20:51:00] -rw-------. 1 boincer umatlas  11888640 Nov 27 20:51 result.tar.gz
[2025-11-27 20:51:00] -rw-r--r--. 1 boincer umatlas      9428 Nov 27 20:51 runtime_log.err
[2025-11-27 20:51:00] -rw-------. 1 boincer umatlas       791 Nov 27 20:51 ONMMDmraBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm4cJKDmvkNyIm.diag
[2025-11-27 20:51:00] -rw-r--r--. 1 boincer umatlas     23599 Nov 27 20:51 stderr.txt
[2025-11-27 20:51:00] HITS file was successfully produced:
[2025-11-27 20:51:00] -rw-------. 1 boincer umatlas 923434075 Nov 27 20:49 shared/HITS.pool.root.1
[2025-11-27 20:51:00]  *** Contents of shared directory: ***
[2025-11-27 20:51:00] total 1315528
[2025-11-27 20:51:00] -rw-r--r--. 3 boincer umatlas 411152399 Nov 27 00:12 ATLAS.root_0
[2025-11-27 20:51:00] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:12 start_atlas.sh
[2025-11-27 20:51:00] -rw-r--r--. 2 boincer umatlas    590108 Nov 27 00:12 input.tar.gz
[2025-11-27 20:51:00] -rw-------. 1 boincer umatlas 923434075 Nov 27 20:49 HITS.pool.root.1
[2025-11-27 20:51:00] -rw-------. 1 boincer umatlas  11888640 Nov 27 20:51 result.tar.gz
20:51:02 (4056469): run_atlas exited; CPU time 145429.194131
20:51:02 (4056469): called boinc_finish(0)

</stderr_txt>
]]>

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