Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
07:22:36 (1755991): wrapper (7.7.26015): starting
07:22:36 (1755991): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 07:22:36] Arguments: --nthreads 8
[2025-11-27 07:22:36] Threads: 8
[2025-11-27 07:22:36] Checking for CVMFS
[2025-11-27 07:22:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 07:22:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 07:22:38] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 07:22:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 07:22:39] 2.13.2.0 12053 37268 269272 153364 2 314 38142762 40960000 13638 16776704 0 40667871 99.743 25423716 38495 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 07:22:39] CVMFS is ok
[2025-11-27 07:22:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 07:22:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 07:22:39] Further information can be found at the LHC@home message board.
[2025-11-27 07:22:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 07:22:39] Checking for apptainer binary...
[2025-11-27 07:22:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 07:22:39] Running /usr/bin/apptainer --version
[2025-11-27 07:22:39] apptainer version 1.4.4-1.el9
[2025-11-27 07:22:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 07:22:39] c-210-31-4.aglt2.org
[2025-11-27 07:22:39] apptainer works
[2025-11-27 07:22:39] Set ATHENA_PROC_NUMBER=8
[2025-11-27 07:22:39] Set ATHENA_CORE_NUMBER=8
[2025-11-27 07:22:40] Starting ATLAS job with PandaID=6898177895
[2025-11-27 07:22:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 00:41:41]  *** The last 200 lines of the pilot log: ***
[2025-11-28 00:41:41] 2025-11-28 05:40:51,842 | INFO     | sum of deviations: 3243339203214.6475
[2025-11-28 00:41:41] 2025-11-28 05:40:51,847 | INFO     | mean x: 1764277377.6611001
[2025-11-28 00:41:41] 2025-11-28 05:40:51,847 | INFO     | mean y: 2921120.996070727
[2025-11-28 00:41:41] 2025-11-28 05:40:51,847 | INFO     | intersect: -17490003532.768703
[2025-11-28 00:41:41] 2025-11-28 05:40:51,848 | INFO     | chi2: 10.13872045449567
[2025-11-28 00:41:41] 2025-11-28 05:40:51,849 | INFO     | sum of square deviations: 322316359010.11285
[2025-11-28 00:41:41] 2025-11-28 05:40:51,891 | INFO     | sum of deviations: 3612822950547.471
[2025-11-28 00:41:41] 2025-11-28 05:40:51,892 | INFO     | mean x: 1764277225.171767
[2025-11-28 00:41:41] 2025-11-28 05:40:51,892 | INFO     | mean y: 2932869.457058243
[2025-11-28 00:41:41] 2025-11-28 05:40:51,892 | INFO     | intersect: -19772734955.174763
[2025-11-28 00:41:41] 2025-11-28 05:40:51,893 | INFO     | chi2: 6.62046426245145
[2025-11-28 00:41:41] 2025-11-28 05:40:51,893 | INFO     | current chi2=6.62046426245145 (change=34.701185498059274 %)
[2025-11-28 00:41:41] 2025-11-28 05:40:51,899 | INFO     | sum of square deviations: 317566904772.3096
[2025-11-28 00:41:41] 2025-11-28 05:40:51,934 | INFO     | sum of deviations: 3669740421981.234
[2025-11-28 00:41:41] 2025-11-28 05:40:51,934 | INFO     | mean x: 1764277072.671627
[2025-11-28 00:41:41] 2025-11-28 05:40:51,934 | INFO     | mean y: 2934692.8194444445
[2025-11-28 00:41:41] 2025-11-28 05:40:51,934 | INFO     | intersect: -20384702658.11882
[2025-11-28 00:41:41] 2025-11-28 05:40:51,939 | INFO     | chi2: 6.345265465761314
[2025-11-28 00:41:41] 2025-11-28 05:40:51,940 | INFO     | current chi2=6.345265465761314 (change=4.156790004153486 %)
[2025-11-28 00:41:41] 2025-11-28 05:40:51,940 | INFO     | right removable region: 1007
[2025-11-28 00:41:41] 2025-11-28 05:40:51,941 | INFO     | sum of square deviations: 322315078989.45526
[2025-11-28 00:41:41] 2025-11-28 05:40:51,981 | INFO     | sum of deviations: 2829050128947.83
[2025-11-28 00:41:41] 2025-11-28 05:40:51,981 | INFO     | mean x: 1764277530.17078
[2025-11-28 00:41:41] 2025-11-28 05:40:51,981 | INFO     | mean y: 2934289.561697927
[2025-11-28 00:41:41] 2025-11-28 05:40:51,981 | INFO     | intersect: -15482625957.505415
[2025-11-28 00:41:41] 2025-11-28 05:40:51,982 | INFO     | chi2: 5.977655785725432
[2025-11-28 00:41:41] 2025-11-28 05:40:51,983 | INFO     | current chi2=5.977655785725432 (change=41.041319636396096 %)
[2025-11-28 00:41:41] 2025-11-28 05:40:51,988 | INFO     | sum of square deviations: 317565022877.139
[2025-11-28 00:41:41] 2025-11-28 05:40:52,011 | INFO     | sum of deviations: 2545062424603.7607
[2025-11-28 00:41:41] 2025-11-28 05:40:52,011 | INFO     | mean x: 1764277682.6805556
[2025-11-28 00:41:41] 2025-11-28 05:40:52,011 | INFO     | mean y: 2943402.564484127
[2025-11-28 00:41:41] 2025-11-28 05:40:52,011 | INFO     | intersect: -14136513128.498344
[2025-11-28 00:41:41] 2025-11-28 05:40:52,013 | INFO     | chi2: 4.165482135578239
[2025-11-28 00:41:41] 2025-11-28 05:40:52,013 | INFO     | current chi2=4.165482135578239 (change=30.315791258416734 %)
[2025-11-28 00:41:41] 2025-11-28 05:40:52,014 | INFO     | sum of square deviations: 312862711349.76514
[2025-11-28 00:41:41] 2025-11-28 05:40:52,032 | INFO     | sum of deviations: 2470802592422.1787
[2025-11-28 00:41:41] 2025-11-28 05:40:52,033 | INFO     | mean x: 1764277835.1764705
[2025-11-28 00:41:41] 2025-11-28 05:40:52,033 | INFO     | mean y: 2945810.2701894315
[2025-11-28 00:41:41] 2025-11-28 05:40:52,033 | INFO     | intersect: -13930265437.885431
[2025-11-28 00:41:41] 2025-11-28 05:40:52,034 | INFO     | chi2: 4.132480612969959
[2025-11-28 00:41:41] 2025-11-28 05:40:52,034 | INFO     | current chi2=4.132480612969959 (change=0.7922617726866966 %)
[2025-11-28 00:41:41] 2025-11-28 05:40:52,034 | INFO     | left removable region: 30
[2025-11-28 00:41:41] 2025-11-28 05:40:52,035 | INFO     | sum of square deviations: 289157093288.3664
[2025-11-28 00:41:41] 2025-11-28 05:40:52,057 | INFO     | sum of deviations: 2767700573857.3037
[2025-11-28 00:41:41] 2025-11-28 05:40:52,057 | INFO     | mean x: 1764277957.1770728
[2025-11-28 00:41:41] 2025-11-28 05:40:52,057 | INFO     | mean y: 2964244.986693961
[2025-11-28 00:41:41] 2025-11-28 05:40:52,057 | INFO     | intersect: -16884026348.92253
[2025-11-28 00:41:41] 2025-11-28 05:40:52,058 | INFO     | chi2: 0.25383965080839266
[2025-11-28 00:41:41] 2025-11-28 05:40:52,059 | INFO     | current memory leak: 9.57 B/s (using 977 data points, chi2=0.25)
[2025-11-28 00:41:41] 2025-11-28 05:40:52,060 | INFO     | could have reported an average CPU frequency of 2734 MHz (37 samples)
[2025-11-28 00:41:41] 2025-11-28 05:40:52,060 | INFO     | ..............................
[2025-11-28 00:41:41] 2025-11-28 05:40:52,060 | INFO     | . Timing measurements:
[2025-11-28 00:41:41] 2025-11-28 05:40:52,060 | INFO     | . get job = 0 s
[2025-11-28 00:41:41] 2025-11-28 05:40:52,060 | INFO     | . initial setup = 6 s
[2025-11-28 00:41:41] 2025-11-28 05:40:52,060 | INFO     | . payload setup = 38 s
[2025-11-28 00:41:41] 2025-11-28 05:40:52,060 | INFO     | . stage-in = 0 s
[2025-11-28 00:41:41] 2025-11-28 05:40:52,060 | INFO     | . payload execution = 62090 s
[2025-11-28 00:41:41] 2025-11-28 05:40:52,060 | INFO     | . stage-out = 3 s
[2025-11-28 00:41:41] 2025-11-28 05:40:52,060 | INFO     | . log creation = 0 s
[2025-11-28 00:41:41] 2025-11-28 05:40:52,060 | INFO     | ..............................
[2025-11-28 00:41:41] 2025-11-28 05:40:52,440 | INFO     | 
[2025-11-28 00:41:41] 2025-11-28 05:40:52,440 | INFO     | job summary report
[2025-11-28 00:41:41] 2025-11-28 05:40:52,440 | INFO     | --------------------------------------------------
[2025-11-28 00:41:41] 2025-11-28 05:40:52,440 | INFO     | PanDA job id: 6898177895
[2025-11-28 00:41:41] 2025-11-28 05:40:52,440 | INFO     | task id: 47556161
[2025-11-28 00:41:41] 2025-11-28 05:40:52,440 | INFO     | errors: (none)
[2025-11-28 00:41:41] 2025-11-28 05:40:52,440 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 00:41:41] 2025-11-28 05:40:52,440 | INFO     | pilot state: finished 
[2025-11-28 00:41:41] 2025-11-28 05:40:52,440 | INFO     | transexitcode: 0
[2025-11-28 00:41:41] 2025-11-28 05:40:52,440 | INFO     | exeerrorcode: 0
[2025-11-28 00:41:41] 2025-11-28 05:40:52,440 | INFO     | exeerrordiag: 
[2025-11-28 00:41:41] 2025-11-28 05:40:52,441 | INFO     | exitcode: 0
[2025-11-28 00:41:41] 2025-11-28 05:40:52,441 | INFO     | exitmsg: OK
[2025-11-28 00:41:41] 2025-11-28 05:40:52,441 | INFO     | cpuconsumptiontime: 250312 s
[2025-11-28 00:41:41] 2025-11-28 05:40:52,441 | INFO     | nevents: 1000
[2025-11-28 00:41:41] 2025-11-28 05:40:52,441 | INFO     | neventsw: 0
[2025-11-28 00:41:41] 2025-11-28 05:40:52,441 | INFO     | pid: 1767773
[2025-11-28 00:41:41] 2025-11-28 05:40:52,441 | INFO     | pgrp: 1767773
[2025-11-28 00:41:41] 2025-11-28 05:40:52,441 | INFO     | corecount: 8
[2025-11-28 00:41:41] 2025-11-28 05:40:52,441 | INFO     | event service: False
[2025-11-28 00:41:41] 2025-11-28 05:40:52,441 | INFO     | sizes: {0: 2284093, 1: 2284292, 2: 2284320, 13: 2284320, 24: 2284376, 31: 2284666, 35: 2284822, 62132: 2339829, 62137: 2348823, 62139: 2348879, 62160: 2349125}
[2025-11-28 00:41:41] 2025-11-28 05:40:52,441 | INFO     | --------------------------------------------------
[2025-11-28 00:41:41] 2025-11-28 05:40:52,441 | INFO     | 
[2025-11-28 00:41:41] 2025-11-28 05:40:52,441 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-28 00:41:41] 2025-11-28 05:40:52,493 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 00:41:41] 2025-11-28 05:40:52,493 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 00:41:41] 2025-11-28 05:40:52,493 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 00:41:41] 2025-11-28 05:40:52,494 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 00:41:41] 2025-11-28 05:40:52,494 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 00:41:41] 2025-11-28 05:40:52,494 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 00:41:41] 2025-11-28 05:40:52,494 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 00:41:41] 2025-11-28 05:40:52,494 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 00:41:41] 2025-11-28 05:40:52,494 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 00:41:41] 2025-11-28 05:40:52,494 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 00:41:41] 2025-11-28 05:40:52,494 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 00:41:41] 2025-11-28 05:40:52,494 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 00:41:41] 2025-11-28 05:40:52,494 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 00:41:41] 2025-11-28 05:40:52,494 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 00:41:41] 2025-11-28 05:40:52,494 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 00:41:41] 2025-11-28 05:40:52,495 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 00:41:41] 2025-11-28 05:40:52,495 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 00:41:41] 2025-11-28 05:40:52,495 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 00:41:41] 2025-11-28 05:40:52,495 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 00:41:41] 2025-11-28 05:40:52,495 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 00:41:41] 2025-11-28 05:40:52,495 | INFO     | job 6898177895 has completed (purged errors)
[2025-11-28 00:41:41] 2025-11-28 05:40:52,495 | INFO     | overall cleanup function is called
[2025-11-28 00:41:41] 2025-11-28 05:40:52,861 | INFO     | PID=1759824 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 00:41:41] 2025-11-28 05:40:52,861 | INFO     | .. there are 13 such processes running
[2025-11-28 00:41:41] 2025-11-28 05:40:53,523 | INFO     | --- collectZombieJob: --- 10, [1767773]
[2025-11-28 00:41:41] 2025-11-28 05:40:53,526 | INFO     | zombie collector waiting for pid 1767773
[2025-11-28 00:41:41] 2025-11-28 05:40:53,526 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 00:41:41] 2025-11-28 05:40:53,526 | INFO     | collected zombie processes
[2025-11-28 00:41:41] 2025-11-28 05:40:53,526 | INFO     | will attempt to kill all subprocesses of pid=1767773
[2025-11-28 00:41:41] 2025-11-28 05:40:53,862 | INFO     | process IDs to be killed: [1767773] (in reverse order)
[2025-11-28 00:41:41] 2025-11-28 05:40:53,967 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 00:41:41] 2025-11-28 05:40:53,967 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 00:41:41] 2025-11-28 05:40:53,991 | INFO     | did not find any defunct processes belonging to 1767773
[2025-11-28 00:41:41] 2025-11-28 05:40:54,001 | INFO     | did not find any defunct processes belonging to 1767773
[2025-11-28 00:41:41] 2025-11-28 05:40:54,002 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 00:41:41] 2025-11-28 05:40:54,002 | INFO     | ready for new job
[2025-11-28 00:41:41] 2025-11-28 05:40:54,002 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 00:41:41] 2025-11-28 05:40:54,007 | INFO     | ***************************************
[2025-11-28 00:41:41] 2025-11-28 05:40:54,008 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 00:41:41] 2025-11-28 05:40:54,008 | INFO     | ***************************************
[2025-11-28 00:41:41] 2025-11-28 05:40:54,008 | INFO     | 
[2025-11-28 00:41:41] 2025-11-28 05:40:54,011 | INFO     | architecture information:
[2025-11-28 00:41:41] 2025-11-28 05:40:54,012 | INFO     | executing command: cat /etc/os-release
[2025-11-28 00:41:41] 2025-11-28 05:40:54,034 | INFO     | cat /etc/os-release:
[2025-11-28 00:41:41] NAME="CentOS Linux"
[2025-11-28 00:41:41] VERSION="7 (Core)"
[2025-11-28 00:41:41] ID="centos"
[2025-11-28 00:41:41] ID_LIKE="rhel fedora"
[2025-11-28 00:41:41] VERSION_ID="7"
[2025-11-28 00:41:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 00:41:41] ANSI_COLOR="0;31"
[2025-11-28 00:41:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 00:41:41] HOME_URL="https://www.centos.org/"
[2025-11-28 00:41:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 00:41:41] 
[2025-11-28 00:41:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 00:41:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 00:41:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 00:41:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 00:41:41] 
[2025-11-28 00:41:41] 2025-11-28 05:40:54,038 | INFO     | ***************************************
[2025-11-28 00:41:41] 2025-11-28 05:40:54,542 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-28 00:41:41] 2025-11-28 05:40:54,636 | INFO     | sufficient remaining disk space (67984424960 B)
[2025-11-28 00:41:41] 2025-11-28 05:40:54,636 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 00:41:41] 2025-11-28 05:40:54,636 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 00:41:41] 2025-11-28 05:40:54,637 | INFO     | update_server=False
[2025-11-28 00:41:41] 2025-11-28 05:40:54,637 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 00:41:41] 2025-11-28 05:40:54,891 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 00:41:41] 2025-11-28 05:40:55,014 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-28 00:41:41] 2025-11-28 05:40:55,015 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-28 00:41:41] 2025-11-28 05:40:55,015 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 00:41:41] 2025-11-28 05:40:55,015 | INFO     | will abort loop
[2025-11-28 00:41:41] 2025-11-28 05:40:55,236 | INFO     | all payload control threads have been joined
[2025-11-28 00:41:41] 2025-11-28 05:40:55,463 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 00:41:41] 2025-11-28 05:40:55,584 | INFO     | all data control threads have been joined
[2025-11-28 00:41:41] 2025-11-28 05:40:55,588 | INFO     | all job control threads have been joined
[2025-11-28 00:41:41] 2025-11-28 05:40:55,643 | INFO     | [job] retrieve thread has finished
[2025-11-28 00:41:41] 2025-11-28 05:40:55,684 | INFO     | [payload] validate_post thread has finished
[2025-11-28 00:41:41] 2025-11-28 05:40:55,899 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 00:41:41] 2025-11-28 05:40:56,015 | INFO     | [data] copytool_in thread has finished
[2025-11-28 00:41:41] 2025-11-28 05:40:56,020 | INFO     | [job] job monitor thread has finished
[2025-11-28 00:41:41] 2025-11-28 05:40:56,243 | INFO     | [payload] control thread has finished
[2025-11-28 00:41:41] 2025-11-28 05:40:56,366 | INFO     | [payload] failed_post thread has finished
[2025-11-28 00:41:41] 2025-11-28 05:40:56,589 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 00:41:41] 2025-11-28 05:40:56,591 | INFO     | [data] control thread has finished
[2025-11-28 00:41:41] 2025-11-28 05:40:56,595 | INFO     | [job] control thread has finished
[2025-11-28 00:41:41] 2025-11-28 05:40:56,647 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 00:41:41] 2025-11-28 05:40:56,897 | INFO     | [data] copytool_out thread has finished
[2025-11-28 00:41:41] 2025-11-28 05:40:56,985 | INFO     | [job] validate thread has finished
[2025-11-28 00:41:41] 2025-11-28 05:40:56,988 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 00:41:41] 2025-11-28 05:40:57,200 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 00:41:41] 2025-11-28 05:40:58,207 | INFO     | [job] queue monitor thread has finished
[2025-11-28 00:41:41] 2025-11-28 05:40:59,486 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 00:41:41] 2025-11-28 05:41:25,388 | INFO     | PID=1759824 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 00:41:41] 2025-11-28 05:41:25,389 | INFO     | .. there are 13 such processes running
[2025-11-28 00:41:41] 2025-11-28 05:41:25,389 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 00:41:41] 2025-11-28 05:41:25,389 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 00:41:41] 2025-11-28 05:41:25,389 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 00:41:41] 2025-11-28 05:41:33,652 | INFO     | [monitor] cgroup control has ended
[2025-11-28 00:41:41] 2025-11-28 05:41:35,551 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140070141978432)>', '<ExcThread(monitor, started 140069771908864)>']
[2025-11-28 00:41:41] 2025-11-28 05:41:36,453 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 00:41:41] 2025-11-28 05:41:36,454 | INFO     | [monitor] control thread has ended
[2025-11-28 00:41:41] 2025-11-28 05:41:40,576 | INFO     | all workflow threads have been joined
[2025-11-28 00:41:41] 2025-11-28 05:41:40,577 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 00:41:41] 2025-11-28 05:41:40,577 | INFO     | traces error code: 0
[2025-11-28 00:41:41] 2025-11-28 05:41:40,577 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 00:41:41] 2025-11-28 05:41:40,998 [wrapper] ==== pilot stdout END ====
[2025-11-28 00:41:41] 2025-11-28 05:41:41,027 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 00:41:41] 2025-11-28 05:41:41,051 [wrapper] pilotpid: 1759824
[2025-11-28 00:41:41] 2025-11-28 05:41:41,075 [wrapper] Pilot exit status: 0
[2025-11-28 00:41:41] 2025-11-28 05:41:41,156 [wrapper] pandaids: 6898177895
[2025-11-28 00:41:41] 2025-11-28 05:41:41,320 [wrapper] cleanup supervisor_pilot 3450093 1759825
[2025-11-28 00:41:41] 2025-11-28 05:41:41,345 [wrapper] Test setup, not cleaning
[2025-11-28 00:41:41] 2025-11-28 05:41:41,371 [wrapper] apfmon messages muted
[2025-11-28 00:41:41] 2025-11-28 05:41:41,385 [wrapper] ==== wrapper stdout END ====
[2025-11-28 00:41:41] 2025-11-28 05:41:41,396 [wrapper] ==== wrapper stderr END ====
[2025-11-28 00:41:41]  *** Error codes and diagnostics ***
[2025-11-28 00:41:41]     "exeErrorCode": 0,
[2025-11-28 00:41:41]     "exeErrorDiag": "",
[2025-11-28 00:41:41]     "pilotErrorCode": 0,
[2025-11-28 00:41:41]     "pilotErrorDiag": "",
[2025-11-28 00:41:41]  *** Listing of results directory ***
[2025-11-28 00:41:41] total 1312844
[2025-11-28 00:41:41] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 22:33 pilot3.tar.gz
[2025-11-28 00:41:41] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 23:06 queuedata.json
[2025-11-28 00:41:41] -rwx------. 1 boincer umatlas     36292 Nov 25 23:06 runpilot2-wrapper.sh
[2025-11-28 00:41:41] -rw-r--r--. 1 boincer umatlas       100 Nov 27 07:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 00:41:41] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 07:22 run_atlas
[2025-11-28 00:41:41] -rw-r--r--. 1 boincer umatlas       105 Nov 27 07:22 job.xml
[2025-11-28 00:41:41] -rw-r--r--. 2 boincer umatlas 407110954 Nov 27 07:22 EVNT.47483658._002470.pool.root.1
[2025-11-28 00:41:41] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 07:22 start_atlas.sh
[2025-11-28 00:41:41] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 07:22 shared
[2025-11-28 00:41:41] -rw-r--r--. 2 boincer umatlas    590100 Nov 27 07:22 input.tar.gz
[2025-11-28 00:41:41] -rw-r--r--. 1 boincer umatlas         0 Nov 27 07:22 boinc_lockfile
[2025-11-28 00:41:41] -rw-r--r--. 1 boincer umatlas      2785 Nov 27 07:22 pandaJob.out
[2025-11-28 00:41:41] -rw-------. 1 boincer umatlas        57 Nov 27 07:22 setup.sh.local
[2025-11-28 00:41:41] -rw-------. 1 boincer umatlas    991566 Nov 27 07:23 agis_schedconf.cvmfs.json
[2025-11-28 00:41:41] drwx------. 5 boincer umatlas      4096 Nov 27 07:23 pilot3
[2025-11-28 00:41:41] -rw-r--r--. 1 boincer umatlas       533 Nov 28 00:29 boinc_task_state.xml
[2025-11-28 00:41:41] -rw-r--r--. 1 boincer umatlas      6841 Nov 28 00:36 init_data.xml
[2025-11-28 00:41:41] -rw-------. 1 boincer umatlas 912304372 Nov 28 00:39 HITS.47556161._004522.pool.root.1
[2025-11-28 00:41:41] -rw-------. 1 boincer umatlas      1057 Nov 28 00:40 memory_monitor_summary.json
[2025-11-28 00:41:41] -rw-------. 1 boincer umatlas   1516240 Nov 28 00:40 agis_ddmendpoints.agis.ALL.json
[2025-11-28 00:41:41] -rw-------. 1 boincer umatlas        95 Nov 28 00:40 pilot_heartbeat.json
[2025-11-28 00:41:41] -rw-------. 1 boincer umatlas   2178169 Nov 28 00:40 log.47556161._004522.job.log.tgz.1
[2025-11-28 00:41:41] -rw-------. 1 boincer umatlas      8620 Nov 28 00:40 heartbeat.json
[2025-11-28 00:41:41] -rw-r--r--. 1 boincer umatlas      8192 Nov 28 00:41 boinc_mmap_file
[2025-11-28 00:41:41] -rw-r--r--. 1 boincer umatlas        29 Nov 28 00:41 wrapper_checkpoint.txt
[2025-11-28 00:41:41] -rw-------. 1 boincer umatlas      5010 Nov 28 00:41 pilotlog.txt
[2025-11-28 00:41:41] -rw-------. 1 boincer umatlas   8331088 Nov 28 00:41 log.47556161._004522.job.log.1
[2025-11-28 00:41:41] -rw-------. 1 boincer umatlas       353 Nov 28 00:41 output.list
[2025-11-28 00:41:41] -rw-r--r--. 1 boincer umatlas       620 Nov 28 00:41 runtime_log
[2025-11-28 00:41:41] -rw-------. 1 boincer umatlas  10526720 Nov 28 00:41 result.tar.gz
[2025-11-28 00:41:41] -rw-r--r--. 1 boincer umatlas      9353 Nov 28 00:41 runtime_log.err
[2025-11-28 00:41:41] -rw-------. 1 boincer umatlas       662 Nov 28 00:41 6cDLDmuyLi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmBvMKDmhwCFGn.diag
[2025-11-28 00:41:41] -rw-r--r--. 1 boincer umatlas     21324 Nov 28 00:41 stderr.txt
[2025-11-28 00:41:41] HITS file was successfully produced:
[2025-11-28 00:41:41] -rw-------. 1 boincer umatlas 912304372 Nov 28 00:39 shared/HITS.pool.root.1
[2025-11-28 00:41:41]  *** Contents of shared directory: ***
[2025-11-28 00:41:41] total 1299380
[2025-11-28 00:41:41] -rw-r--r--. 2 boincer umatlas 407110954 Nov 27 07:22 ATLAS.root_0
[2025-11-28 00:41:41] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 07:22 start_atlas.sh
[2025-11-28 00:41:41] -rw-r--r--. 2 boincer umatlas    590100 Nov 27 07:22 input.tar.gz
[2025-11-28 00:41:41] -rw-------. 1 boincer umatlas 912304372 Nov 28 00:39 HITS.pool.root.1
[2025-11-28 00:41:41] -rw-------. 1 boincer umatlas  10526720 Nov 28 00:41 result.tar.gz
00:41:43 (1755991): run_atlas exited; CPU time 251172.232430
00:41:43 (1755991): called boinc_finish(0)

</stderr_txt>
]]>

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