Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:11:24 (1439025): wrapper (7.7.26015): starting
00:11:24 (1439025): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 00:11:24] Arguments: --nthreads 8
[2025-11-27 00:11:24] Threads: 8
[2025-11-27 00:11:24] Checking for CVMFS
[2025-11-27 00:11:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:11:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:11:25] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:11:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:11:26] 2.13.3.0 5308 9438 220284 153348 2 57 25989457 32935936 28102 16776704 0 27803843 99.381 50832993 40110 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 00:11:26] CVMFS is ok
[2025-11-27 00:11:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:11:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:11:26] Further information can be found at the LHC@home message board.
[2025-11-27 00:11:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:11:26] Checking for apptainer binary...
[2025-11-27 00:11:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:11:26] Running /usr/bin/apptainer --version
[2025-11-27 00:11:26] apptainer version 1.4.4-1.el9
[2025-11-27 00:11:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:11:27] c6-1-24-1.aglt2.org
[2025-11-27 00:11:27] apptainer works
[2025-11-27 00:11:27] Set ATHENA_PROC_NUMBER=8
[2025-11-27 00:11:27] Set ATHENA_CORE_NUMBER=8
[2025-11-27 00:11:27] Starting ATLAS job with PandaID=6898178644
[2025-11-27 00:11:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 08:15:36]  *** The last 200 lines of the pilot log: ***
[2025-11-28 08:15:36] 2025-11-28 13:14:30,324 | INFO     | time since job start (115324s) is within the limit (172800.0s)
[2025-11-28 08:15:36] 2025-11-28 13:14:32,060 | INFO     | monitor loop #6331: job 0:6898178644 is in state 'finished'
[2025-11-28 08:15:36] 2025-11-28 13:14:32,060 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 08:15:36] 2025-11-28 13:14:32,331 | INFO     | time since job start (115326s) is within the limit (172800.0s)
[2025-11-28 08:15:36] 2025-11-28 13:14:34,338 | INFO     | time since job start (115328s) is within the limit (172800.0s)
[2025-11-28 08:15:36] 2025-11-28 13:14:34,567 | INFO     | monitor loop #6332: job 0:6898178644 is in state 'finished'
[2025-11-28 08:15:36] 2025-11-28 13:14:34,567 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 08:15:36] 2025-11-28 13:14:36,377 | INFO     | time since job start (115330s) is within the limit (172800.0s)
[2025-11-28 08:15:36] 2025-11-28 13:14:37,092 | INFO     | monitor loop #6333: job 0:6898178644 is in state 'finished'
[2025-11-28 08:15:36] 2025-11-28 13:14:37,092 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 08:15:36] 2025-11-28 13:14:38,443 | INFO     | time since job start (115332s) is within the limit (172800.0s)
[2025-11-28 08:15:36] 2025-11-28 13:14:39,599 | INFO     | monitor loop #6334: job 0:6898178644 is in state 'finished'
[2025-11-28 08:15:36] 2025-11-28 13:14:39,599 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 08:15:36] 2025-11-28 13:14:40,450 | INFO     | time since job start (115334s) is within the limit (172800.0s)
[2025-11-28 08:15:36] 2025-11-28 13:14:40,741 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-28 08:15:36] 2025-11-28 13:14:40,780 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2936.7582321428577
[2025-11-28 08:15:36] 2025-11-28 13:14:40,821 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6898178644/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 08:15:36] 2025-11-28 13:14:40,822 | INFO     | extracted standard info from prmon json
[2025-11-28 08:15:36] 2025-11-28 13:14:40,822 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 08:15:36] 2025-11-28 13:14:40,823 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 08:15:36] 2025-11-28 13:14:41,050 | INFO     | fitting pss+swap vs Time
[2025-11-28 08:15:36] 2025-11-28 13:14:41,053 | INFO     | sum of square deviations: 2086962910360.8938
[2025-11-28 08:15:36] 2025-11-28 13:14:41,233 | INFO     | sum of deviations: 6581019150103.305
[2025-11-28 08:15:36] 2025-11-28 13:14:41,233 | INFO     | mean x: 1764278060.2574153
[2025-11-28 08:15:36] 2025-11-28 13:14:41,233 | INFO     | mean y: 2954569.318326271
[2025-11-28 08:15:36] 2025-11-28 13:14:41,233 | INFO     | intersect: -5560511672.951088
[2025-11-28 08:15:36] 2025-11-28 13:14:41,243 | INFO     | chi2: 19.339026690929238
[2025-11-28 08:15:36] 2025-11-28 13:14:41,246 | INFO     | sum of square deviations: 2070430395819.2607
[2025-11-28 08:15:36] 2025-11-28 13:14:41,406 | INFO     | sum of deviations: 7230415440110.968
[2025-11-28 08:15:36] 2025-11-28 13:14:41,406 | INFO     | mean x: 1764277907.772172
[2025-11-28 08:15:36] 2025-11-28 13:14:41,406 | INFO     | mean y: 2960558.27031333
[2025-11-28 08:15:36] 2025-11-28 13:14:41,407 | INFO     | intersect: -6158300525.7831335
[2025-11-28 08:15:36] 2025-11-28 13:14:41,415 | INFO     | chi2: 16.11506879932863
[2025-11-28 08:15:36] 2025-11-28 13:14:41,416 | INFO     | current chi2=16.11506879932863 (change=16.67073500194698 %)
[2025-11-28 08:15:36] 2025-11-28 13:14:41,416 | INFO     | right removable region: 1882
[2025-11-28 08:15:36] 2025-11-28 13:14:41,418 | INFO     | sum of square deviations: 2070423880154.7183
[2025-11-28 08:15:36] 2025-11-28 13:14:41,504 | INFO     | sum of deviations: 5826758693176.041
[2025-11-28 08:15:36] 2025-11-28 13:14:41,504 | INFO     | mean x: 1764278212.7727032
[2025-11-28 08:15:36] 2025-11-28 13:14:41,504 | INFO     | mean y: 2961524.0865639937
[2025-11-28 08:15:36] 2025-11-28 13:14:41,504 | INFO     | intersect: -4962216627.1074
[2025-11-28 08:15:36] 2025-11-28 13:14:41,506 | INFO     | chi2: 15.48360246173424
[2025-11-28 08:15:36] 2025-11-28 13:14:41,507 | INFO     | current chi2=15.48360246173424 (change=19.935978634350526 %)
[2025-11-28 08:15:36] 2025-11-28 13:14:41,507 | INFO     | left removable region: 10
[2025-11-28 08:15:36] 2025-11-28 13:14:41,526 | INFO     | sum of square deviations: 2034354849196.0745
[2025-11-28 08:15:36] 2025-11-28 13:14:41,721 | INFO     | sum of deviations: 6125289289058.444
[2025-11-28 08:15:36] 2025-11-28 13:14:41,721 | INFO     | mean x: 1764278182.3012822
[2025-11-28 08:15:36] 2025-11-28 13:14:41,721 | INFO     | mean y: 2973230.3183760685
[2025-11-28 08:15:36] 2025-11-28 13:14:41,721 | INFO     | intersect: -5309135548.167385
[2025-11-28 08:15:36] 2025-11-28 13:14:41,723 | INFO     | chi2: 10.007890531394178
[2025-11-28 08:15:36] 2025-11-28 13:14:41,723 | INFO     | current memory leak: 3.01 B/s (using 1872 data points, chi2=10.01)
[2025-11-28 08:15:36] 2025-11-28 13:14:41,728 | INFO     | could have reported an average CPU frequency of 2915 MHz (66 samples)
[2025-11-28 08:15:36] 2025-11-28 13:14:41,729 | INFO     | ..............................
[2025-11-28 08:15:36] 2025-11-28 13:14:41,729 | INFO     | . Timing measurements:
[2025-11-28 08:15:36] 2025-11-28 13:14:41,729 | INFO     | . get job = 0 s
[2025-11-28 08:15:36] 2025-11-28 13:14:41,729 | INFO     | . initial setup = 4 s
[2025-11-28 08:15:36] 2025-11-28 13:14:41,729 | INFO     | . payload setup = 42 s
[2025-11-28 08:15:36] 2025-11-28 13:14:41,729 | INFO     | . stage-in = 0 s
[2025-11-28 08:15:36] 2025-11-28 13:14:41,729 | INFO     | . payload execution = 115167 s
[2025-11-28 08:15:36] 2025-11-28 13:14:41,729 | INFO     | . stage-out = 9 s
[2025-11-28 08:15:36] 2025-11-28 13:14:41,729 | INFO     | . log creation = 1 s
[2025-11-28 08:15:36] 2025-11-28 13:14:41,729 | INFO     | ..............................
[2025-11-28 08:15:36] 2025-11-28 13:14:42,244 | INFO     | 
[2025-11-28 08:15:36] 2025-11-28 13:14:42,244 | INFO     | job summary report
[2025-11-28 08:15:36] 2025-11-28 13:14:42,244 | INFO     | --------------------------------------------------
[2025-11-28 08:15:36] 2025-11-28 13:14:42,244 | INFO     | PanDA job id: 6898178644
[2025-11-28 08:15:36] 2025-11-28 13:14:42,244 | INFO     | task id: 47556173
[2025-11-28 08:15:36] 2025-11-28 13:14:42,244 | INFO     | errors: (none)
[2025-11-28 08:15:36] 2025-11-28 13:14:42,244 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 08:15:36] 2025-11-28 13:14:42,245 | INFO     | pilot state: finished 
[2025-11-28 08:15:36] 2025-11-28 13:14:42,245 | INFO     | transexitcode: 0
[2025-11-28 08:15:36] 2025-11-28 13:14:42,245 | INFO     | exeerrorcode: 0
[2025-11-28 08:15:36] 2025-11-28 13:14:42,245 | INFO     | exeerrordiag: 
[2025-11-28 08:15:36] 2025-11-28 13:14:42,245 | INFO     | exitcode: 0
[2025-11-28 08:15:36] 2025-11-28 13:14:42,245 | INFO     | exitmsg: OK
[2025-11-28 08:15:36] 2025-11-28 13:14:42,245 | INFO     | cpuconsumptiontime: 240309 s
[2025-11-28 08:15:36] 2025-11-28 13:14:42,245 | INFO     | nevents: 1000
[2025-11-28 08:15:36] 2025-11-28 13:14:42,245 | INFO     | neventsw: 0
[2025-11-28 08:15:36] 2025-11-28 13:14:42,245 | INFO     | pid: 1464056
[2025-11-28 08:15:36] 2025-11-28 13:14:42,245 | INFO     | pgrp: 1464056
[2025-11-28 08:15:36] 2025-11-28 13:14:42,245 | INFO     | corecount: 8
[2025-11-28 08:15:36] 2025-11-28 13:14:42,245 | INFO     | event service: False
[2025-11-28 08:15:36] 2025-11-28 13:14:42,245 | INFO     | sizes: {0: 2284037, 1: 2284292, 2: 2284320, 13: 2284320, 24: 2284376, 35: 2284404, 39: 2284822, 46: 2284850, 115211: 2360957, 115212: 2360956, 115222: 2370006, 115
[2025-11-28 08:15:36] 2025-11-28 13:14:42,245 | INFO     | --------------------------------------------------
[2025-11-28 08:15:36] 2025-11-28 13:14:42,245 | INFO     | 
[2025-11-28 08:15:36] 2025-11-28 13:14:42,245 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-28 08:15:36] 2025-11-28 13:14:42,430 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 08:15:36] 2025-11-28 13:14:42,431 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 08:15:36] 2025-11-28 13:14:42,431 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 08:15:36] 2025-11-28 13:14:42,431 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 08:15:36] 2025-11-28 13:14:42,431 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 08:15:36] 2025-11-28 13:14:42,431 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 08:15:36] 2025-11-28 13:14:42,431 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 08:15:36] 2025-11-28 13:14:42,431 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 08:15:36] 2025-11-28 13:14:42,431 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 08:15:36] 2025-11-28 13:14:42,431 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 08:15:36] 2025-11-28 13:14:42,432 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 08:15:36] 2025-11-28 13:14:42,432 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 08:15:36] 2025-11-28 13:14:42,432 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 08:15:36] 2025-11-28 13:14:42,432 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 08:15:36] 2025-11-28 13:14:42,432 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 08:15:36] 2025-11-28 13:14:42,432 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 08:15:36] 2025-11-28 13:14:42,432 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 08:15:36] 2025-11-28 13:14:42,432 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 08:15:36] 2025-11-28 13:14:42,432 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 08:15:36] 2025-11-28 13:14:42,432 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 08:15:36] 2025-11-28 13:14:42,433 | INFO     | job 6898178644 has completed (purged errors)
[2025-11-28 08:15:36] 2025-11-28 13:14:42,433 | INFO     | overall cleanup function is called
[2025-11-28 08:15:36] 2025-11-28 13:14:43,451 | INFO     | --- collectZombieJob: --- 10, [1464056]
[2025-11-28 08:15:36] 2025-11-28 13:14:43,451 | INFO     | zombie collector waiting for pid 1464056
[2025-11-28 08:15:36] 2025-11-28 13:14:43,451 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 08:15:36] 2025-11-28 13:14:43,451 | INFO     | collected zombie processes
[2025-11-28 08:15:36] 2025-11-28 13:14:43,451 | INFO     | will attempt to kill all subprocesses of pid=1464056
[2025-11-28 08:15:36] 2025-11-28 13:14:46,029 | INFO     | process IDs to be killed: [1464056] (in reverse order)
[2025-11-28 08:15:36] 2025-11-28 13:14:46,199 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 08:15:36] 2025-11-28 13:14:46,200 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 08:15:36] 2025-11-28 13:14:46,230 | INFO     | did not find any defunct processes belonging to 1464056
[2025-11-28 08:15:36] 2025-11-28 13:14:46,264 | INFO     | did not find any defunct processes belonging to 1464056
[2025-11-28 08:15:36] 2025-11-28 13:14:46,265 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 08:15:36] 2025-11-28 13:14:46,266 | INFO     | ready for new job
[2025-11-28 08:15:36] 2025-11-28 13:14:46,266 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 08:15:36] 2025-11-28 13:14:46,282 | INFO     | ***************************************
[2025-11-28 08:15:36] 2025-11-28 13:14:46,282 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 08:15:36] 2025-11-28 13:14:46,282 | INFO     | ***************************************
[2025-11-28 08:15:36] 2025-11-28 13:14:46,282 | INFO     | 
[2025-11-28 08:15:36] 2025-11-28 13:14:46,285 | INFO     | architecture information:
[2025-11-28 08:15:36] 2025-11-28 13:14:46,286 | INFO     | executing command: cat /etc/os-release
[2025-11-28 08:15:36] 2025-11-28 13:14:46,352 | INFO     | cat /etc/os-release:
[2025-11-28 08:15:36] NAME="CentOS Linux"
[2025-11-28 08:15:36] VERSION="7 (Core)"
[2025-11-28 08:15:36] ID="centos"
[2025-11-28 08:15:36] ID_LIKE="rhel fedora"
[2025-11-28 08:15:36] VERSION_ID="7"
[2025-11-28 08:15:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 08:15:36] ANSI_COLOR="0;31"
[2025-11-28 08:15:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 08:15:36] HOME_URL="https://www.centos.org/"
[2025-11-28 08:15:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 08:15:36] 
[2025-11-28 08:15:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 08:15:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 08:15:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 08:15:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 08:15:36] 
[2025-11-28 08:15:36] 2025-11-28 13:14:46,353 | INFO     | ***************************************
[2025-11-28 08:15:36] 2025-11-28 13:14:46,856 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-28 08:15:36] 2025-11-28 13:14:47,055 | INFO     | sufficient remaining disk space (71207747584 B)
[2025-11-28 08:15:36] 2025-11-28 13:14:47,056 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 08:15:36] 2025-11-28 13:14:47,056 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 08:15:36] 2025-11-28 13:14:47,056 | INFO     | update_server=False
[2025-11-28 08:15:36] 2025-11-28 13:14:47,056 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 08:15:36] 2025-11-28 13:14:47,065 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 08:15:36] 2025-11-28 13:14:47,240 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 08:15:36] 2025-11-28 13:14:47,244 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-28 08:15:36] 2025-11-28 13:14:47,244 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-28 08:15:36] 2025-11-28 13:14:47,244 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 08:15:36] 2025-11-28 13:14:47,244 | INFO     | will abort loop
[2025-11-28 08:15:36] 2025-11-28 13:14:47,857 | INFO     | all payload control threads have been joined
[2025-11-28 08:15:36] 2025-11-28 13:14:47,857 | INFO     | all job control threads have been joined
[2025-11-28 08:15:36] 2025-11-28 13:14:48,051 | INFO     | all data control threads have been joined
[2025-11-28 08:15:36] 2025-11-28 13:14:48,071 | INFO     | [job] queue monitor thread has finished
[2025-11-28 08:15:36] 2025-11-28 13:14:48,094 | INFO     | [job] retrieve thread has finished
[2025-11-28 08:15:36] 2025-11-28 13:14:48,185 | INFO     | [payload] failed_post thread has finished
[2025-11-28 08:15:36] 2025-11-28 13:14:48,250 | INFO     | [job] job monitor thread has finished
[2025-11-28 08:15:36] 2025-11-28 13:14:48,254 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 08:15:36] 2025-11-28 13:14:48,254 | INFO     | [job] validate thread has finished
[2025-11-28 08:15:36] 2025-11-28 13:14:48,270 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 08:15:36] 2025-11-28 13:14:48,270 | INFO     | [data] copytool_in thread has finished
[2025-11-28 08:15:36] 2025-11-28 13:14:48,798 | INFO     | [payload] validate_post thread has finished
[2025-11-28 08:15:36] 2025-11-28 13:14:48,863 | INFO     | [payload] control thread has finished
[2025-11-28 08:15:36] 2025-11-28 13:14:48,863 | INFO     | [job] control thread has finished
[2025-11-28 08:15:36] 2025-11-28 13:14:49,057 | INFO     | [data] control thread has finished
[2025-11-28 08:15:36] 2025-11-28 13:14:49,247 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 08:15:36] 2025-11-28 13:14:49,254 | INFO     | [data] copytool_out thread has finished
[2025-11-28 08:15:36] 2025-11-28 13:14:49,273 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 08:15:36] 2025-11-28 13:14:49,273 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 08:15:36] 2025-11-28 13:14:53,321 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 08:15:36] 2025-11-28 13:15:05,696 | INFO     | [monitor] cgroup control has ended
[2025-11-28 08:15:36] 2025-11-28 13:15:06,122 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140578531669824)>', '<ExcThread(monitor, started 140577165276928)>']
[2025-11-28 08:15:36] 2025-11-28 13:15:11,158 | INFO     | all workflow threads have been joined
[2025-11-28 08:15:36] 2025-11-28 13:15:11,158 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 08:15:36] 2025-11-28 13:15:11,158 | INFO     | traces error code: 0
[2025-11-28 08:15:36] 2025-11-28 13:15:11,159 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 08:15:36] 2025-11-28 13:15:15,628 | INFO     | PID=1446556 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 08:15:36] 2025-11-28 13:15:15,628 | INFO     | .. there are 32 such processes running
[2025-11-28 08:15:36] 2025-11-28 13:15:15,629 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 08:15:36] 2025-11-28 13:15:15,629 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 08:15:36] 2025-11-28 13:15:15,629 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 08:15:36] 2025-11-28 13:15:15,629 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 08:15:36] 2025-11-28 13:15:15,629 | CRITICAL | thread 'MainThread' is not alive
[2025-11-28 08:15:36] 2025-11-28 13:15:15,629 | INFO     | [monitor] control thread has ended
[2025-11-28 08:15:36] 2025-11-28 13:15:15,851 [wrapper] ==== pilot stdout END ====
[2025-11-28 08:15:36] 2025-11-28 13:15:15,885 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 08:15:36] 2025-11-28 13:15:15,913 [wrapper] pilotpid: 1446556
[2025-11-28 08:15:36] 2025-11-28 13:15:15,935 [wrapper] Pilot exit status: 0
[2025-11-28 08:15:36] 2025-11-28 13:15:16,065 [wrapper] pandaids: 6898178644
[2025-11-28 08:15:36] 2025-11-28 13:15:16,346 [wrapper] cleanup supervisor_pilot 3569224 1446557
[2025-11-28 08:15:36] 2025-11-28 13:15:16,408 [wrapper] Test setup, not cleaning
[2025-11-28 08:15:36] 2025-11-28 13:15:16,467 [wrapper] apfmon messages muted
[2025-11-28 08:15:36] 2025-11-28 13:15:16,496 [wrapper] ==== wrapper stdout END ====
[2025-11-28 08:15:36] 2025-11-28 13:15:16,519 [wrapper] ==== wrapper stderr END ====
[2025-11-28 08:15:36]  *** Error codes and diagnostics ***
[2025-11-28 08:15:36]     "exeErrorCode": 0,
[2025-11-28 08:15:36]     "exeErrorDiag": "",
[2025-11-28 08:15:36]     "pilotErrorCode": 0,
[2025-11-28 08:15:36]     "pilotErrorDiag": "",
[2025-11-28 08:15:36]  *** Listing of results directory ***
[2025-11-28 08:15:36] total 1329384
[2025-11-28 08:15:36] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 22:33 pilot3.tar.gz
[2025-11-28 08:15:36] -rwx------. 1 boincer umatlas     36292 Nov 25 23:06 runpilot2-wrapper.sh
[2025-11-28 08:15:36] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 23:06 queuedata.json
[2025-11-28 08:15:36] -rw-r--r--. 1 boincer umatlas       100 Nov 27 00:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 08:15:36] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 00:11 run_atlas
[2025-11-28 08:15:36] -rw-r--r--. 1 boincer umatlas       105 Nov 27 00:11 job.xml
[2025-11-28 08:15:36] -rw-r--r--. 2 boincer umatlas 407414678 Nov 27 00:11 EVNT.47483658._003175.pool.root.1
[2025-11-28 08:15:36] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 00:11 shared
[2025-11-28 08:15:36] -rw-r--r--. 2 boincer umatlas    590096 Nov 27 00:11 input.tar.gz
[2025-11-28 08:15:36] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:11 start_atlas.sh
[2025-11-28 08:15:36] -rw-r--r--. 1 boincer umatlas         0 Nov 27 00:11 boinc_lockfile
[2025-11-28 08:15:36] -rw-r--r--. 1 boincer umatlas      2785 Nov 27 00:11 pandaJob.out
[2025-11-28 08:15:36] -rw-------. 1 boincer umatlas        57 Nov 27 00:11 setup.sh.local
[2025-11-28 08:15:36] -rw-------. 1 boincer umatlas    991570 Nov 27 00:12 agis_schedconf.cvmfs.json
[2025-11-28 08:15:36] drwx------. 5 boincer umatlas      4096 Nov 27 00:12 pilot3
[2025-11-28 08:15:36] -rw-r--r--. 1 boincer umatlas       533 Nov 28 07:39 boinc_task_state.xml
[2025-11-28 08:15:36] -rw-------. 1 boincer umatlas 916947182 Nov 28 08:12 HITS.47556173._001312.pool.root.1
[2025-11-28 08:15:36] -rw-------. 1 boincer umatlas      1059 Nov 28 08:13 memory_monitor_summary.json
[2025-11-28 08:15:36] -rw-r--r--. 1 boincer umatlas      6843 Nov 28 08:13 init_data.xml
[2025-11-28 08:15:36] -rw-------. 1 boincer umatlas   1516240 Nov 28 08:14 agis_ddmendpoints.agis.ALL.json
[2025-11-28 08:15:36] -rw-------. 1 boincer umatlas   2739815 Nov 28 08:14 log.47556173._001312.job.log.tgz.1
[2025-11-28 08:15:36] -rw-------. 1 boincer umatlas      8621 Nov 28 08:14 heartbeat.json
[2025-11-28 08:15:36] -rw-------. 1 boincer umatlas       893 Nov 28 08:15 pilotlog.txt
[2025-11-28 08:15:36] -rw-------. 1 boincer umatlas        95 Nov 28 08:15 pilot_heartbeat.json
[2025-11-28 08:15:36] -rw-------. 1 boincer umatlas  13764381 Nov 28 08:15 log.47556173._001312.job.log.1
[2025-11-28 08:15:36] -rw-------. 1 boincer umatlas       353 Nov 28 08:15 output.list
[2025-11-28 08:15:36] -rw-r--r--. 1 boincer umatlas       620 Nov 28 08:15 runtime_log
[2025-11-28 08:15:36] -rw-------. 1 boincer umatlas  16527360 Nov 28 08:15 result.tar.gz
[2025-11-28 08:15:36] -rw-r--r--. 1 boincer umatlas      9349 Nov 28 08:15 runtime_log.err
[2025-11-28 08:15:36] -rw-------. 1 boincer umatlas       664 Nov 28 08:15 PoLODmtyLi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmrtJKDm8SKRKn.diag
[2025-11-28 08:15:36] -rw-r--r--. 1 boincer umatlas      8192 Nov 28 08:15 boinc_mmap_file
[2025-11-28 08:15:36] -rw-r--r--. 1 boincer umatlas        29 Nov 28 08:15 wrapper_checkpoint.txt
[2025-11-28 08:15:36] -rw-r--r--. 1 boincer umatlas     21762 Nov 28 08:15 stderr.txt
[2025-11-28 08:15:36] HITS file was successfully produced:
[2025-11-28 08:15:36] -rw-------. 1 boincer umatlas 916947182 Nov 28 08:12 shared/HITS.pool.root.1
[2025-11-28 08:15:36]  *** Contents of shared directory: ***
[2025-11-28 08:15:36] total 1310068
[2025-11-28 08:15:36] -rw-r--r--. 2 boincer umatlas 407414678 Nov 27 00:11 ATLAS.root_0
[2025-11-28 08:15:36] -rw-r--r--. 2 boincer umatlas    590096 Nov 27 00:11 input.tar.gz
[2025-11-28 08:15:36] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:11 start_atlas.sh
[2025-11-28 08:15:36] -rw-------. 1 boincer umatlas 916947182 Nov 28 08:12 HITS.pool.root.1
[2025-11-28 08:15:36] -rw-------. 1 boincer umatlas  16527360 Nov 28 08:15 result.tar.gz
08:15:38 (1439025): run_atlas exited; CPU time 243237.479515
08:15:38 (1439025): called boinc_finish(0)

</stderr_txt>
]]>

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