Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:13:02 (421978): wrapper (7.7.26015): starting
00:13:02 (421978): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 00:13:02] Arguments: --nthreads 8
[2025-11-27 00:13:02] Threads: 8
[2025-11-27 00:13:02] Checking for CVMFS
[2025-11-27 00:13:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:13:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:13:03] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:13:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:13:03] 2.13.3.0 12213 31055 238308 153348 0 323 29467011 40960000 70044 16776704 0 290870349 99.726 208986858 35325 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 00:13:03] CVMFS is ok
[2025-11-27 00:13:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:13:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:13:03] Further information can be found at the LHC@home message board.
[2025-11-27 00:13:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:13:03] Checking for apptainer binary...
[2025-11-27 00:13:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:13:03] Running /usr/bin/apptainer --version
[2025-11-27 00:13:03] apptainer version 1.4.4-1.el9
[2025-11-27 00:13:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:13:03] c7-3-35.aglt2.org
[2025-11-27 00:13:03] apptainer works
[2025-11-27 00:13:03] Set ATHENA_PROC_NUMBER=8
[2025-11-27 00:13:03] Set ATHENA_CORE_NUMBER=8
[2025-11-27 00:13:03] Starting ATLAS job with PandaID=6898178294
[2025-11-27 00:13:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 03:27:29]  *** The last 200 lines of the pilot log: ***
[2025-11-28 03:27:29] 2025-11-28 08:26:39,156 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 03:27:29] 2025-11-28 08:26:40,106 | INFO     | time since job start (97998s) is within the limit (172800.0s)
[2025-11-28 03:27:29] 2025-11-28 08:26:41,668 | INFO     | monitor loop #5835: job 0:6898178294 is in state 'finished'
[2025-11-28 03:27:29] 2025-11-28 08:26:41,668 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 03:27:29] 2025-11-28 08:26:42,114 | INFO     | time since job start (98000s) is within the limit (172800.0s)
[2025-11-28 03:27:29] 2025-11-28 08:26:44,133 | INFO     | time since job start (98002s) is within the limit (172800.0s)
[2025-11-28 03:27:29] 2025-11-28 08:26:44,181 | INFO     | monitor loop #5836: job 0:6898178294 is in state 'finished'
[2025-11-28 03:27:29] 2025-11-28 08:26:44,181 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 03:27:29] 2025-11-28 08:26:46,174 | INFO     | time since job start (98004s) is within the limit (172800.0s)
[2025-11-28 03:27:29] 2025-11-28 08:26:46,687 | INFO     | monitor loop #5837: job 0:6898178294 is in state 'finished'
[2025-11-28 03:27:29] 2025-11-28 08:26:46,687 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 03:27:29] 2025-11-28 08:26:48,193 | INFO     | time since job start (98006s) is within the limit (172800.0s)
[2025-11-28 03:27:29] 2025-11-28 08:26:48,641 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-28 03:27:29] 2025-11-28 08:26:48,665 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3213.406802083331
[2025-11-28 03:27:29] 2025-11-28 08:26:48,797 | INFO     | using path: /tmp/boinchome/slots/9/PanDA_Pilot-6898178294/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 03:27:29] 2025-11-28 08:26:48,797 | INFO     | extracted standard info from prmon json
[2025-11-28 03:27:29] 2025-11-28 08:26:48,798 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 03:27:29] 2025-11-28 08:26:48,798 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 03:27:29] 2025-11-28 08:26:48,840 | INFO     | fitting pss+swap vs Time
[2025-11-28 03:27:29] 2025-11-28 08:26:48,841 | INFO     | sum of square deviations: 1282096901730.3257
[2025-11-28 03:27:29] 2025-11-28 08:26:48,934 | INFO     | sum of deviations: 3456645879920.737
[2025-11-28 03:27:29] 2025-11-28 08:26:48,934 | INFO     | mean x: 1764269369.5239875
[2025-11-28 03:27:29] 2025-11-28 08:26:48,935 | INFO     | mean y: 2914296.22741433
[2025-11-28 03:27:29] 2025-11-28 08:26:48,935 | INFO     | intersect: -4753710915.958137
[2025-11-28 03:27:29] 2025-11-28 08:26:48,941 | INFO     | chi2: 28.29415315168023
[2025-11-28 03:27:29] 2025-11-28 08:26:48,946 | INFO     | sum of square deviations: 1270153102879.7344
[2025-11-28 03:27:29] 2025-11-28 08:26:49,227 | INFO     | sum of deviations: 3993869898201.6597
[2025-11-28 03:27:29] 2025-11-28 08:26:49,227 | INFO     | mean x: 1764269217.028125
[2025-11-28 03:27:29] 2025-11-28 08:26:49,227 | INFO     | mean y: 2921154.474375
[2025-11-28 03:27:29] 2025-11-28 08:26:49,227 | INFO     | intersect: -5544647640.371629
[2025-11-28 03:27:29] 2025-11-28 08:26:49,228 | INFO     | chi2: 24.904561832974398
[2025-11-28 03:27:29] 2025-11-28 08:26:49,228 | INFO     | current chi2=24.904561832974398 (change=11.979829544764247 %)
[2025-11-28 03:27:29] 2025-11-28 08:26:49,228 | INFO     | right removable region: 1599
[2025-11-28 03:27:29] 2025-11-28 08:26:49,231 | INFO     | sum of square deviations: 1270151708478.677
[2025-11-28 03:27:29] 2025-11-28 08:26:49,283 | INFO     | monitor loop #5838: job 0:6898178294 is in state 'finished'
[2025-11-28 03:27:29] 2025-11-28 08:26:49,283 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 03:27:29] 2025-11-28 08:26:49,675 | INFO     | sum of deviations: 2993734469553.617
[2025-11-28 03:27:29] 2025-11-28 08:26:49,675 | INFO     | mean x: 1764269522.02875
[2025-11-28 03:27:29] 2025-11-28 08:26:49,675 | INFO     | mean y: 2920202.13875
[2025-11-28 03:27:29] 2025-11-28 08:26:49,676 | INFO     | intersect: -4155444854.9035854
[2025-11-28 03:27:29] 2025-11-28 08:26:49,677 | INFO     | chi2: 26.07485857704737
[2025-11-28 03:27:29] 2025-11-28 08:26:49,677 | INFO     | current chi2=26.07485857704737 (change=7.843650816250249 %)
[2025-11-28 03:27:29] 2025-11-28 08:26:49,677 | INFO     | left removable region: 10
[2025-11-28 03:27:29] 2025-11-28 08:26:49,682 | INFO     | sum of square deviations: 1244136093819.2412
[2025-11-28 03:27:29] 2025-11-28 08:26:49,849 | INFO     | sum of deviations: 3478863215092.15
[2025-11-28 03:27:29] 2025-11-28 08:26:49,849 | INFO     | mean x: 1764269491.535557
[2025-11-28 03:27:29] 2025-11-28 08:26:49,849 | INFO     | mean y: 2930398.7671491504
[2025-11-28 03:27:29] 2025-11-28 08:26:49,849 | INFO     | intersect: -4930333949.163674
[2025-11-28 03:27:29] 2025-11-28 08:26:49,851 | INFO     | chi2: 21.952231284617138
[2025-11-28 03:27:29] 2025-11-28 08:26:49,858 | INFO     | current memory leak: 2.80 B/s (using 1589 data points, chi2=21.95)
[2025-11-28 03:27:29] 2025-11-28 08:26:49,863 | INFO     | could have reported an average CPU frequency of 3240 MHz (57 samples)
[2025-11-28 03:27:29] 2025-11-28 08:26:49,863 | INFO     | ..............................
[2025-11-28 03:27:29] 2025-11-28 08:26:49,864 | INFO     | . Timing measurements:
[2025-11-28 03:27:29] 2025-11-28 08:26:49,864 | INFO     | . get job = 0 s
[2025-11-28 03:27:29] 2025-11-28 08:26:49,864 | INFO     | . initial setup = 2 s
[2025-11-28 03:27:29] 2025-11-28 08:26:49,864 | INFO     | . payload setup = 13 s
[2025-11-28 03:27:29] 2025-11-28 08:26:49,864 | INFO     | . stage-in = 0 s
[2025-11-28 03:27:29] 2025-11-28 08:26:49,864 | INFO     | . payload execution = 97899 s
[2025-11-28 03:27:29] 2025-11-28 08:26:49,864 | INFO     | . stage-out = 14 s
[2025-11-28 03:27:29] 2025-11-28 08:26:49,864 | INFO     | . log creation = 5 s
[2025-11-28 03:27:29] 2025-11-28 08:26:49,864 | INFO     | ..............................
[2025-11-28 03:27:29] 2025-11-28 08:26:50,311 | INFO     | time since job start (98008s) is within the limit (172800.0s)
[2025-11-28 03:27:29] 2025-11-28 08:26:50,319 | INFO     | 
[2025-11-28 03:27:29] 2025-11-28 08:26:50,319 | INFO     | job summary report
[2025-11-28 03:27:29] 2025-11-28 08:26:50,320 | INFO     | --------------------------------------------------
[2025-11-28 03:27:29] 2025-11-28 08:26:50,320 | INFO     | PanDA job id: 6898178294
[2025-11-28 03:27:29] 2025-11-28 08:26:50,320 | INFO     | task id: 47556161
[2025-11-28 03:27:29] 2025-11-28 08:26:50,320 | INFO     | errors: (none)
[2025-11-28 03:27:29] 2025-11-28 08:26:50,320 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 03:27:29] 2025-11-28 08:26:50,320 | INFO     | pilot state: finished 
[2025-11-28 03:27:29] 2025-11-28 08:26:50,320 | INFO     | transexitcode: 0
[2025-11-28 03:27:29] 2025-11-28 08:26:50,320 | INFO     | exeerrorcode: 0
[2025-11-28 03:27:29] 2025-11-28 08:26:50,320 | INFO     | exeerrordiag: 
[2025-11-28 03:27:29] 2025-11-28 08:26:50,320 | INFO     | exitcode: 0
[2025-11-28 03:27:29] 2025-11-28 08:26:50,320 | INFO     | exitmsg: OK
[2025-11-28 03:27:29] 2025-11-28 08:26:50,320 | INFO     | cpuconsumptiontime: 199873 s
[2025-11-28 03:27:29] 2025-11-28 08:26:50,321 | INFO     | nevents: 1000
[2025-11-28 03:27:29] 2025-11-28 08:26:50,321 | INFO     | neventsw: 0
[2025-11-28 03:27:29] 2025-11-28 08:26:50,321 | INFO     | pid: 444313
[2025-11-28 03:27:29] 2025-11-28 08:26:50,321 | INFO     | pgrp: 444313
[2025-11-28 03:27:29] 2025-11-28 08:26:50,321 | INFO     | corecount: 8
[2025-11-28 03:27:29] 2025-11-28 08:26:50,321 | INFO     | event service: False
[2025-11-28 03:27:29] 2025-11-28 08:26:50,321 | INFO     | sizes: {0: 2284093, 1: 2284292, 11: 2284582, 97914: 2355360, 97931: 2364382, 97933: 2364438, 97987: 2364812}
[2025-11-28 03:27:29] 2025-11-28 08:26:50,321 | INFO     | --------------------------------------------------
[2025-11-28 03:27:29] 2025-11-28 08:26:50,321 | INFO     | 
[2025-11-28 03:27:29] 2025-11-28 08:26:50,321 | INFO     | executing command: ls -lF /tmp/boinchome/slots/9
[2025-11-28 03:27:29] 2025-11-28 08:26:51,258 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 03:27:29] 2025-11-28 08:26:51,258 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 03:27:29] 2025-11-28 08:26:51,258 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 03:27:29] 2025-11-28 08:26:51,259 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 03:27:29] 2025-11-28 08:26:51,259 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 03:27:29] 2025-11-28 08:26:51,259 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 03:27:29] 2025-11-28 08:26:51,259 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 03:27:29] 2025-11-28 08:26:51,259 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 03:27:29] 2025-11-28 08:26:51,259 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 03:27:29] 2025-11-28 08:26:51,259 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 03:27:29] 2025-11-28 08:26:51,259 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 03:27:29] 2025-11-28 08:26:51,259 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 03:27:29] 2025-11-28 08:26:51,259 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 03:27:29] 2025-11-28 08:26:51,259 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 03:27:29] 2025-11-28 08:26:51,259 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 03:27:29] 2025-11-28 08:26:51,260 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 03:27:29] 2025-11-28 08:26:51,260 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 03:27:29] 2025-11-28 08:26:51,260 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 03:27:29] 2025-11-28 08:26:51,260 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 03:27:29] 2025-11-28 08:26:51,260 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 03:27:29] 2025-11-28 08:26:51,260 | INFO     | job 6898178294 has completed (purged errors)
[2025-11-28 03:27:29] 2025-11-28 08:26:51,260 | INFO     | overall cleanup function is called
[2025-11-28 03:27:29] 2025-11-28 08:26:52,295 | INFO     | --- collectZombieJob: --- 10, [444313]
[2025-11-28 03:27:29] 2025-11-28 08:26:52,295 | INFO     | zombie collector waiting for pid 444313
[2025-11-28 03:27:29] 2025-11-28 08:26:52,295 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 03:27:29] 2025-11-28 08:26:52,295 | INFO     | collected zombie processes
[2025-11-28 03:27:29] 2025-11-28 08:26:52,295 | INFO     | will attempt to kill all subprocesses of pid=444313
[2025-11-28 03:27:29] 2025-11-28 08:26:57,274 | INFO     | process IDs to be killed: [444313] (in reverse order)
[2025-11-28 03:27:29] 2025-11-28 08:26:58,057 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 03:27:29] 2025-11-28 08:26:58,057 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 03:27:29] 2025-11-28 08:26:58,122 | INFO     | did not find any defunct processes belonging to 444313
[2025-11-28 03:27:29] 2025-11-28 08:26:58,215 | INFO     | did not find any defunct processes belonging to 444313
[2025-11-28 03:27:29] 2025-11-28 08:26:58,587 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 03:27:29] 2025-11-28 08:26:58,587 | INFO     | ready for new job
[2025-11-28 03:27:29] 2025-11-28 08:26:58,587 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 03:27:29] 2025-11-28 08:26:58,646 | INFO     | ***************************************
[2025-11-28 03:27:29] 2025-11-28 08:26:58,778 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 03:27:29] 2025-11-28 08:26:58,778 | INFO     | ***************************************
[2025-11-28 03:27:29] 2025-11-28 08:26:58,778 | INFO     | 
[2025-11-28 03:27:29] 2025-11-28 08:26:58,868 | INFO     | architecture information:
[2025-11-28 03:27:29] 2025-11-28 08:26:58,895 | INFO     | executing command: cat /etc/os-release
[2025-11-28 03:27:29] 2025-11-28 08:26:58,944 | INFO     | cat /etc/os-release:
[2025-11-28 03:27:29] NAME="CentOS Linux"
[2025-11-28 03:27:29] VERSION="7 (Core)"
[2025-11-28 03:27:29] ID="centos"
[2025-11-28 03:27:29] ID_LIKE="rhel fedora"
[2025-11-28 03:27:29] VERSION_ID="7"
[2025-11-28 03:27:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 03:27:29] ANSI_COLOR="0;31"
[2025-11-28 03:27:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 03:27:29] HOME_URL="https://www.centos.org/"
[2025-11-28 03:27:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 03:27:29] 
[2025-11-28 03:27:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 03:27:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 03:27:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 03:27:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 03:27:29] 
[2025-11-28 03:27:29] 2025-11-28 08:26:58,944 | INFO     | ***************************************
[2025-11-28 03:27:29] 2025-11-28 08:26:59,448 | INFO     | executing command: df -mP /tmp/boinchome/slots/9
[2025-11-28 03:27:29] 2025-11-28 08:26:59,531 | INFO     | sufficient remaining disk space (117727821824 B)
[2025-11-28 03:27:29] 2025-11-28 08:26:59,531 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 03:27:29] 2025-11-28 08:26:59,532 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 03:27:29] 2025-11-28 08:26:59,532 | INFO     | update_server=False
[2025-11-28 03:27:29] 2025-11-28 08:26:59,532 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 03:27:29] 2025-11-28 08:26:59,552 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 03:27:29] 2025-11-28 08:26:59,596 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-28 03:27:29] 2025-11-28 08:26:59,596 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-28 03:27:29] 2025-11-28 08:26:59,596 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 03:27:29] 2025-11-28 08:26:59,596 | INFO     | will abort loop
[2025-11-28 03:27:29] 2025-11-28 08:26:59,988 | INFO     | all data control threads have been joined
[2025-11-28 03:27:29] 2025-11-28 08:27:00,149 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 03:27:29] 2025-11-28 08:27:00,298 | INFO     | all job control threads have been joined
[2025-11-28 03:27:29] 2025-11-28 08:27:00,538 | INFO     | [job] retrieve thread has finished
[2025-11-28 03:27:29] 2025-11-28 08:27:00,558 | INFO     | [job] queue monitor thread has finished
[2025-11-28 03:27:29] 2025-11-28 08:27:00,602 | INFO     | [job] job monitor thread has finished
[2025-11-28 03:27:29] 2025-11-28 08:27:00,677 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 03:27:29] 2025-11-28 08:27:00,827 | INFO     | [payload] validate_post thread has finished
[2025-11-28 03:27:29] 2025-11-28 08:27:01,004 | INFO     | [data] control thread has finished
[2025-11-28 03:27:29] 2025-11-28 08:27:01,036 | INFO     | all payload control threads have been joined
[2025-11-28 03:27:29] 2025-11-28 08:27:01,304 | INFO     | [job] control thread has finished
[2025-11-28 03:27:29] 2025-11-28 08:27:01,406 | INFO     | [job] validate thread has finished
[2025-11-28 03:27:29] 2025-11-28 08:27:01,618 | INFO     | [payload] failed_post thread has finished
[2025-11-28 03:27:29] 2025-11-28 08:27:01,636 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 03:27:29] 2025-11-28 08:27:01,647 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 03:27:29] 2025-11-28 08:27:01,647 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 03:27:29] 2025-11-28 08:27:01,969 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 03:27:29] 2025-11-28 08:27:01,969 | INFO     | [data] copytool_in thread has finished
[2025-11-28 03:27:29] 2025-11-28 08:27:02,066 | INFO     | [payload] control thread has finished
[2025-11-28 03:27:29] 2025-11-28 08:27:02,161 | INFO     | [data] copytool_out thread has finished
[2025-11-28 03:27:29] 2025-11-28 08:27:05,650 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 03:27:29] 2025-11-28 08:27:15,990 | INFO     | [monitor] cgroup control has ended
[2025-11-28 03:27:29] 2025-11-28 08:27:16,604 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140449226049344)>', '<ExcThread(monitor, started 140448517584640)>']
[2025-11-28 03:27:29] 2025-11-28 08:27:21,630 | INFO     | all workflow threads have been joined
[2025-11-28 03:27:29] 2025-11-28 08:27:21,630 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 03:27:29] 2025-11-28 08:27:21,630 | INFO     | traces error code: 0
[2025-11-28 03:27:29] 2025-11-28 08:27:21,630 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 03:27:29] 2025-11-28 08:27:26,330 | INFO     | PID=429503 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-28 03:27:29] 2025-11-28 08:27:26,330 | INFO     | .. there are 91 such processes running
[2025-11-28 03:27:29] 2025-11-28 08:27:26,331 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 03:27:29] 2025-11-28 08:27:26,331 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 03:27:29] 2025-11-28 08:27:26,331 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 03:27:29] 2025-11-28 08:27:26,331 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 03:27:29] 2025-11-28 08:27:26,331 | INFO     | [monitor] control thread has ended
[2025-11-28 03:27:29] 2025-11-28 08:27:26,786 [wrapper] ==== pilot stdout END ====
[2025-11-28 03:27:29] 2025-11-28 08:27:26,844 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 03:27:29] 2025-11-28 08:27:26,864 [wrapper] pilotpid: 429503
[2025-11-28 03:27:29] 2025-11-28 08:27:26,903 [wrapper] Pilot exit status: 0
[2025-11-28 03:27:29] 2025-11-28 08:27:27,073 [wrapper] pandaids: 6898178294
[2025-11-28 03:27:29] 2025-11-28 08:27:27,509 [wrapper] cleanup supervisor_pilot 2895038 429505
[2025-11-28 03:27:29] 2025-11-28 08:27:27,571 [wrapper] Test setup, not cleaning
[2025-11-28 03:27:29] 2025-11-28 08:27:27,624 [wrapper] apfmon messages muted
[2025-11-28 03:27:29] 2025-11-28 08:27:27,665 [wrapper] ==== wrapper stdout END ====
[2025-11-28 03:27:29] 2025-11-28 08:27:27,695 [wrapper] ==== wrapper stderr END ====
[2025-11-28 03:27:29]  *** Error codes and diagnostics ***
[2025-11-28 03:27:29]     "exeErrorCode": 0,
[2025-11-28 03:27:29]     "exeErrorDiag": "",
[2025-11-28 03:27:29]     "pilotErrorCode": 0,
[2025-11-28 03:27:29]     "pilotErrorDiag": "",
[2025-11-28 03:27:29]  *** Listing of results directory ***
[2025-11-28 03:27:29] total 1344992
[2025-11-28 03:27:29] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 22:33 pilot3.tar.gz
[2025-11-28 03:27:29] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 23:06 queuedata.json
[2025-11-28 03:27:29] -rwx------. 1 boincer umatlas     36292 Nov 25 23:06 runpilot2-wrapper.sh
[2025-11-28 03:27:29] -rw-r--r--. 1 boincer umatlas       100 Nov 27 00:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 03:27:29] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 00:13 run_atlas
[2025-11-28 03:27:29] -rw-r--r--. 1 boincer umatlas       105 Nov 27 00:13 job.xml
[2025-11-28 03:27:29] -rw-r--r--. 2 boincer umatlas 410973647 Nov 27 00:13 EVNT.47483658._002473.pool.root.1
[2025-11-28 03:27:29] -rw-r--r--. 2 boincer umatlas    590106 Nov 27 00:13 input.tar.gz
[2025-11-28 03:27:29] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:13 start_atlas.sh
[2025-11-28 03:27:29] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 00:13 shared
[2025-11-28 03:27:29] -rw-r--r--. 1 boincer umatlas         0 Nov 27 00:13 boinc_lockfile
[2025-11-28 03:27:29] -rw-r--r--. 1 boincer umatlas      2785 Nov 27 00:13 pandaJob.out
[2025-11-28 03:27:29] -rw-------. 1 boincer umatlas        57 Nov 27 00:13 setup.sh.local
[2025-11-28 03:27:29] -rw-------. 1 boincer umatlas    991570 Nov 27 00:13 agis_schedconf.cvmfs.json
[2025-11-28 03:27:29] drwx------. 5 boincer umatlas      4096 Nov 27 00:13 pilot3
[2025-11-28 03:27:29] -rw-r--r--. 1 boincer umatlas       533 Nov 28 02:37 boinc_task_state.xml
[2025-11-28 03:27:29] -rw-r--r--. 1 boincer umatlas      6949 Nov 28 03:22 init_data.xml
[2025-11-28 03:27:29] -rw-------. 1 boincer umatlas 932616781 Nov 28 03:24 HITS.47556161._004558.pool.root.1
[2025-11-28 03:27:29] -rw-------. 1 boincer umatlas      1071 Nov 28 03:25 memory_monitor_summary.json
[2025-11-28 03:27:29] -rw-------. 1 boincer umatlas   1516240 Nov 28 03:25 agis_ddmendpoints.agis.ALL.json
[2025-11-28 03:27:29] -rw-------. 1 boincer umatlas   2581638 Nov 28 03:25 log.47556161._004558.job.log.tgz.1
[2025-11-28 03:27:29] -rw-------. 1 boincer umatlas        95 Nov 28 03:26 pilot_heartbeat.json
[2025-11-28 03:27:29] -rw-------. 1 boincer umatlas      8626 Nov 28 03:26 heartbeat.json
[2025-11-28 03:27:29] -rw-------. 1 boincer umatlas       822 Nov 28 03:27 pilotlog.txt
[2025-11-28 03:27:29] -rw-------. 1 boincer umatlas  12301054 Nov 28 03:27 log.47556161._004558.job.log.1
[2025-11-28 03:27:29] -rw-r--r--. 1 boincer umatlas      8192 Nov 28 03:27 boinc_mmap_file
[2025-11-28 03:27:29] -rw-------. 1 boincer umatlas       353 Nov 28 03:27 output.list
[2025-11-28 03:27:29] -rw-r--r--. 1 boincer umatlas        29 Nov 28 03:27 wrapper_checkpoint.txt
[2025-11-28 03:27:29] -rw-r--r--. 1 boincer umatlas       620 Nov 28 03:27 runtime_log
[2025-11-28 03:27:29] -rw-------. 1 boincer umatlas  14899200 Nov 28 03:27 result.tar.gz
[2025-11-28 03:27:29] -rw-r--r--. 1 boincer umatlas      9338 Nov 28 03:27 runtime_log.err
[2025-11-28 03:27:29] -rw-------. 1 boincer umatlas       666 Nov 28 03:27 K52LDmuyLi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmivMKDmpht6Om.diag
[2025-11-28 03:27:29] -rw-r--r--. 1 boincer umatlas     21730 Nov 28 03:27 stderr.txt
[2025-11-28 03:27:29] HITS file was successfully produced:
[2025-11-28 03:27:29] -rw-------. 1 boincer umatlas 932616781 Nov 28 03:24 shared/HITS.pool.root.1
[2025-11-28 03:27:29]  *** Contents of shared directory: ***
[2025-11-28 03:27:29] total 1327256
[2025-11-28 03:27:29] -rw-r--r--. 2 boincer umatlas 410973647 Nov 27 00:13 ATLAS.root_0
[2025-11-28 03:27:29] -rw-r--r--. 2 boincer umatlas    590106 Nov 27 00:13 input.tar.gz
[2025-11-28 03:27:29] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:13 start_atlas.sh
[2025-11-28 03:27:29] -rw-------. 1 boincer umatlas 932616781 Nov 28 03:24 HITS.pool.root.1
[2025-11-28 03:27:29] -rw-------. 1 boincer umatlas  14899200 Nov 28 03:27 result.tar.gz
03:27:30 (421978): run_atlas exited; CPU time 203454.461091
03:27:30 (421978): called boinc_finish(0)

</stderr_txt>
]]>

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